| (1) BRAIN | (9) CELL-LINE | (1) CERVIX | (1) KIDNEY | (2) LIVER | (2) OTHER |
| TTCTATGTAATTGTGCTATTTTGTATTGACAACTTTAAAATCTTACAAAAAAAGTTACGTAAGTAAAGATTTTTTACTACAATTTGCCCTTCCCAAACCATCAATGACTTTTTTTTTTTTTTTTCCAATCTGGGCTTGGTAGTGTCCTGGGTATATTATGAATTTTTTTTCTATCATTTATATATACACATACATTTTAGGGTGGAGACCTAGAAGAACAATTTTGTTTGCAAGCTGGGATGCAGAAGAA ......................................................................................................(((((................((((....((((........))))))))........(((......)))..)))))........................................................................ ...................................................................................................100....................................................................................186.............................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR324841(SRX087285) "Total RNA, no rRNA depletion". (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | GSM532874(GSM532874) G699T. (cervix) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR189785 | SRR039612(GSM531975) Human Normal Liver Tissue Sample 2. (liver) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR553575(SRX182781) source: Kidney. (Kidney) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................TGACTTTTTTTTTTTTTTTTCGAG.......................................................................................................................... | 24 | 5.00 | 0.00 | 4.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTTTCTTG.......................................................................................................................... | 25 | 4.00 | 0.00 | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTTTCAGG.......................................................................................................................... | 25 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................TGACTTTTTTTTTTTTTTTTCGGAG......................................................................................................................... | 25 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTTTCGG........................................................................................................................... | 24 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTTCAGG........................................................................................................................... | 24 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAAATAG...................................................................................................................... | 26 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCGGG......................................................................................................................... | 23 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTCCAG............................................................................................................................ | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAAAAG....................................................................................................................... | 25 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAACCAG...................................................................................................................... | 26 | 2.00 | 0.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................TTTTTTTTCTATCATTATTG.................................................................... | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAACGG....................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTTAGG............................................................................................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTTTCACAG......................................................................................................................... | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................AATGACTTTTTTTTTTTTTTTTCCCCAG........................................................................................................................ | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTCTC.............................................................................................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTCGA.............................................................................................................................. | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCGCC......................................................................................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................TTTTTTTTTTTTTCCAATCTTATG................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAATAAT...................................................................................................................... | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAATCTCAG.................................................................................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................TTTTTTTTCTATCATTCTCT.................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTTTCGAG.......................................................................................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTTTGGG........................................................................................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAAACA....................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................CTTTTTTTTTTTTTTTTCCAAACG....................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................TGACTTTTTTTTTTTTTTTTCCACCA........................................................................................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAAACAG...................................................................................................................... | 26 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................CAATGACTTTTTTTTTTTTTTTTAAG........................................................................................................................... | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTTTGAAG.......................................................................................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTTTCCCCCG........................................................................................................................ | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................TGACTTTTTTTTTTTTTTTTCATG.......................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCACCA........................................................................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTCGG.............................................................................................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTTTTCCAATCTGGGCTATTC.............................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................AAGATTTTTTACTACTC........................................................................................................................................................................ | 17 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................GGAGACCTAGAAGAACAATTTTGT....................... | 24 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................................................................................................................TTTTTCCAATCTGGGCTAT................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTCTTG............................................................................................................................ | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................GAGACCTAGAAGAACAATTTTG........................ | 22 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ................................................................................................................TTTTTTTTTTTTCCAATCCG...................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAACC........................................................................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................TGACTTTTTTTTTTTTTTTTCCTCG......................................................................................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ATGACTTTTTTTTTTTTTTTTGCCG.......................................................................................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TATATATACACATACATTTACT.................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAACT........................................................................................................................ | 24 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................TTTTTTTTTTTTTCCAATATCC..................................................................................................................... | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................AATGACTTTTTTTTTTTTTTTCGG............................................................................................................................ | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAAGCAG...................................................................................................................... | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAAAACG...................................................................................................................... | 26 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAACAT....................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................GTGGAGACCTAGAAGAAG............................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| .............................................................................................................TTTTTTTTTTTTTTTCCAATAAAG..................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ........................................................................................................TGACTTTTTTTTTTTTTTTTCAGC.......................................................................................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAAACC....................................................................................................................... | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCAAAATC...................................................................................................................... | 26 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCGTAG........................................................................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................ACTTTTTTTTTTTTTTTTCCATAAG....................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ............................................................................................................TTTTTTTTTTTTTTTTCCAATCTTG..................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................ACATTTTAGGGTGGAGACCTA...................................... | 21 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| ......................................................................................................AATGACTTTTTTTTTTTTTTTTC............................................................................................................................. | 23 | 8 | 0.12 | 0.12 | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - |
| TTCTATGTAATTGTGCTATTTTGTATTGACAACTTTAAAATCTTACAAAAAAAGTTACGTAAGTAAAGATTTTTTACTACAATTTGCCCTTCCCAAACCATCAATGACTTTTTTTTTTTTTTTTCCAATCTGGGCTTGGTAGTGTCCTGGGTATATTATGAATTTTTTTTCTATCATTTATATATACACATACATTTTAGGGTGGAGACCTAGAAGAACAATTTTGTTTGCAAGCTGGGATGCAGAAGAA ......................................................................................................(((((................((((....((((........))))))))........(((......)))..)))))........................................................................ ...................................................................................................100....................................................................................186.............................................................. | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR324841(SRX087285) "Total RNA, no rRNA depletion". (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | GSM532874(GSM532874) G699T. (cervix) | SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line) | SRR189785 | SRR039612(GSM531975) Human Normal Liver Tissue Sample 2. (liver) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR553575(SRX182781) source: Kidney. (Kidney) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................GACTTTTTTTTTTTTTTTTCGTGT......................................................................................................................... | 24 | 3.00 | 0.00 | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................GACTTTTTTTTTTTTTTTTCGGGT......................................................................................................................... | 24 | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................CTACAATTTGCCCTTCGATC.......................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ............................................................................................................TTTTTTTTTTTTTTTTCCAATT........................................................................................................................ | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ..................................................................................TTTGCCCTTCCCAAAATTG..................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |