ID: uc001nfl.2_intron_1_0_chr11_47493910_r.3p
GENE: (11)
chr11:47493860-47494109-


(4)
BRAIN
(12)
BREAST
(5)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(2)
HELA
(3)
LIVER
(1)
OTHER
(12)
SKIN
(1)
TESTES
(4)
UTERUS
(2)
XRN.ip

Sense strand
ACCTTTAAATTACCATGTAGCTGTTAAGTGGTACTATTAAGAACCTAATTTATTTCGTATGACATAATGTCCAGATTTCTTGTCCCTGCTGAATAAAATTGGGATTTGAGATGAAGCACATAAGGTATCTTGCATAAGGAGGACTGAGAATCTCCTTGCCTCATTATGTCCCTCACCTAGGTTTCTGCTTGGACACACAGGTTTTGTAAGTTACGACAATCCTGTTTCGGCCCAAGCTGCCATCCAGTCC
.....................................................................................................((....((((((............))))))...((((((((........))))))))))..........................................................................................
.....................................................................................................102........................................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577739(Rovira)
total RNA. (breast)
GSM532879(GSM532879)
G659N. (cervix)
SRR189784TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR343336SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
GSM532890(GSM532890)
G576T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR040024(GSM532909)
G613N. (cervix)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................TGAGATGAAGCACATAGCT.............................................................................................................................1922.000.00-2.005.001.001.001.001.002.001.00---2.00------2.00-----1.00----------------1.00-1.00---------1.00----
.................................................................................................................................TTGCATAAGGAGGACTGAGAATCTCCTTGCCTCATTATGTCCCTCACCTAGGTTTCTGCTTGGACACACAGT.................................................7212.000.0012.00----------------------------------------------------------
..........................................................................................................TGAGATGAAGCACATAGCTC............................................................................................................................207.000.00------2.00----1.00---1.00-1.00--1.00--1.00-----------------------------------
...............................TACTATTAAGAACCTAATTT.......................................................................................................................................................................................................2016.006.00---3.00-2.00--------------------1.00--------------------------------
......................................................................................................................................TAAGGAGGACTGAGAATCTCCTTGCCTCATTATGTCCCTCACCTAGGTTTCTGCTTGGACACA.....................................................6316.006.006.00----------------------------------------------------------
..........................................................................................................TGAGATGAAGCACATAAGCTC...........................................................................................................................213.000.00-------------1.00-----------------------1.00------------------1.00--
..........................................................................................................TGAGATGAAGCACATTA...............................................................................................................................173.000.00----1.00-----------------------------------------1.00----1.00-------
......................................................................................................................................TAAGGAGGACTGAGAATCTCCTT.............................................................................................2312.002.00--------------2.00--------------------------------------------
..........................................................................................................TGAGATGAAGCACATAGC..............................................................................................................................182.000.00-2.00---------------------------------------------------------
..........................................................................................................TGAGATGAAGCACATAAGCT............................................................................................................................202.000.00---------1.00--------------1.00----------------------------------
..........................................................................................................TGAGATGAAGCACATTAGC.............................................................................................................................192.000.00-----------1.00----------------------------------------1.00------
..............................................................................................AAAATTGGGATTTGAGATGAAGCACATAAGGT............................................................................................................................3212.002.00---------------------2.00-------------------------------------
..........................................................................................................TGAGATGAAGCACATTAG..............................................................................................................................182.000.00-----------------1.00----------------------1.00------------------
....................CTGTTAAGTGGTACTATTAAGAACCTAATTT.......................................................................................................................................................................................................3112.002.00-------------------------------1.00-----------------1.00---------
.......................................................................................................ATTTGAGATGAAGCACT..................................................................................................................................172.000.00-2.00---------------------------------------------------------
......................................................................................................................................................................................................................................CCCAAGCTGCCATCCAGA..181.000.00---------------------------1.00-------------------------------
..........................................................................................................................................................................................................................ATCCTGTTTCGGCCCAAGCTGCCATCC.....2711.001.00----------------1.00------------------------------------------
.........................................................................................TGAATAAAATTGGGATTTGAGATGA........................................................................................................................................2511.001.00-----------------------------------------1.00-----------------
..............................GTACTATTAAGAACCTAATTT.......................................................................................................................................................................................................2111.001.00------------------------------------1.00----------------------
................................................................................................................................................................................................................................TTTCGGCCCAAGCTGCCATCCAGTCCACGA301.000.00-------------------------------------------1.00---------------
.............................................................................................TAAAATTGGGATTTGAGATGAAGCACATAAGG.............................................................................................................................3211.001.00-----------------------------------------------------1.00-----
..........................................................................................................TGAGATGAAGCACATTCG..............................................................................................................................181.000.00-----------------------------------1.00-----------------------
...........................................................................................................................................AGGACTGAGAATCTCTCTG............................................................................................191.000.00---------------------------------1.00-------------------------
..........................................................................................................TGAGATGAAGCACATAAGCTGA..........................................................................................................................221.000.00----1.00------------------------------------------------------
..........................................................................................................TGAGATGAAGCACATACACT............................................................................................................................201.000.00---------1.00-------------------------------------------------
....................................................................................................................................................................................................................................GGCCCAAGCTGCCATCCAGTCC2211.001.00-------------------------------------------------------1.00---
..................................................................................................TTGGGATTTGAGATGAAGC.....................................................................................................................................1911.001.00---------------------------------------1.00-------------------
.............................................................................................................................................................................................................................CTGTTTCGGCCCAAGCTGCCATC......2311.001.00----------------1.00------------------------------------------
.......................................................................................................ATTTGAGATGAAGCACGT.................................................................................................................................181.000.00------------------------------------------------1.00----------
..............................................................................................................................................ACTGAGAATCTCCTTGCCTC........................................................................................2011.001.00----------------------1.00------------------------------------
................................................................................................................................................................................CTAGGTTTCTGCTTGGACACACAC..................................................241.000.00---------------------------------------------1.00-------------
..........................................................................................................TGAGATGAAGCACATAGCAA............................................................................................................................201.000.00--------1.00--------------------------------------------------
...................................................................................................................................................................................GGTTTCTGCTTGGACACACAG..................................................2111.001.00--------------------------------1.00--------------------------
..........................................................................................................TGAGATGAAGCACATAGCTT............................................................................................................................201.000.00-------1.00---------------------------------------------------
..........................................................................................................TGAGATGAAGCACATAAGGTCG..........................................................................................................................221.000.00--------------------------------------------------1.00--------
..........................................................................................................TGAGATGAAGCACATAAGCCC...........................................................................................................................211.000.00---------------------------------------------------------1.00-
..........................................................................................................TGAGATGAAGCACATAAGCA............................................................................................................................201.000.00---------------1.00-------------------------------------------
..........................................................................................................TGAGATGAAGCACATAGCTA............................................................................................................................201.000.00--------------------1.00--------------------------------------
.................................CTATTAAGAACCTAATTT.......................................................................................................................................................................................................1811.001.00------------------------------1.00----------------------------
..........................................................................................................TGAGATGAAGCACATCG...............................................................................................................................171.000.00--1.00--------------------------------------------------------
...........................................................................TTTCTTGTCCCTGCTGAATA...........................................................................................................................................................2011.001.00-----------------------------1.00-----------------------------
..........................................................................................................TGAGATGAAGCACATAAGCG............................................................................................................................201.000.00--------1.00--------------------------------------------------
.....................................................................................................................................................................................TTTCTGCTTGGACACACAGA.................................................201.000.00------------------1.00----------------------------------------
...................................................................................................................................GCATAAGGAGGACTGTTA.....................................................................................................181.000.00-----------------------------------------------1.00-----------
..................................................................................................................................................................................AGGTTTCTGCTTGGACACACAG..................................................2211.001.00------------------1.00----------------------------------------
..............................................................................................................................................................................................................TAAGTTACGACAATC.............................1511.001.00----------------------------------1.00------------------------
..........................................................................................................TGAGATGAAGCACATAAACA............................................................................................................................201.000.00---------1.00-------------------------------------------------
..............................................................................................................ATGAAGCACATAAGGT............................................................................................................................1611.001.00--------------------------------------1.00--------------------
..........................................................................................................TGAGATGAAGCACATATGC.............................................................................................................................191.000.00----------------------------1.00------------------------------
.............................................................................................................................................................................................................................CTGTTTCGGCCCAAGCTG...........1820.500.50----------------------0.50------------------------------------
...............................................................................................................................................................CTCATTATGTCCCTC............................................................................1590.110.11----------------------------------------------------------0.11

Antisense strand
ACCTTTAAATTACCATGTAGCTGTTAAGTGGTACTATTAAGAACCTAATTTATTTCGTATGACATAATGTCCAGATTTCTTGTCCCTGCTGAATAAAATTGGGATTTGAGATGAAGCACATAAGGTATCTTGCATAAGGAGGACTGAGAATCTCCTTGCCTCATTATGTCCCTCACCTAGGTTTCTGCTTGGACACACAGGTTTTGTAAGTTACGACAATCCTGTTTCGGCCCAAGCTGCCATCCAGTCC
.....................................................................................................((....((((((............))))))...((((((((........))))))))))..........................................................................................
.....................................................................................................102........................................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577739(Rovira)
total RNA. (breast)
GSM532879(GSM532879)
G659N. (cervix)
SRR189784TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR343336SRR040016(GSM532901)
G645N. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
GSM532890(GSM532890)
G576T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR040024(GSM532909)
G613N. (cervix)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
....................................................................................CCTGCTGAATAAAATAAT.................................................................................................................................................... 181.000.00----------1.00------------------------------------------------
.................................................................................................................................................................................TAGGTTTCTGCTTGGTTG....................................................... 181.000.00-------------1.00---------------------------------------------
....................................................................................CCTGCTGAATAAAATAATA................................................................................................................................................... 191.000.00----------1.00------------------------------------------------