ID: uc001neq.2
GENE: MADD(3)
chr11:47297250-47297499+


(1)
AGO1.ip 		(3)
AGO2.ip 		(4)
B-CELL 		(7)
BRAIN 		(10)
BREAST 		(20)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(3)
HELA 		(2)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGTCTTACCCAGTATATATCTTTACATTTGCTTTTGCCATTGTATATACTTTCCGGTCCTATCTGAGCTCAGAGACTGGGCTTTCTTAATGATGCTCCGTTTCCCATTGTCATCATTAGAGCCTCTGTGGTGATACTGAGTTGCAGTAGGGTATCAGCTTCTGATGCTAATGTGTCTGATTCCTGCTGTCTGCTTCTCAGGGACACCATGTGGCGGATCTTTACTGGATCGCTGCTGGTAGAGGAGAAGT
.......................................................................................................................................(((((..(((((((((.((((......(((((....))))))))))))))))))......)))))..................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		SRR189786TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM541797(GSM541797)
differentiated human embryonic stem cells. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR191498(GSM715608)
3genomic small RNA (size selected RNA from to. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
.....................................................................................................................................TACTGAGTTGCAGTAGGGTAT................................................................................................21116.0016.001.002.00-1.001.00----2.001.00-------1.001.001.00--2.00---------------1.001.00---------------------------1.00--
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATC...............................................................................................22114.0014.00--4.001.00-----1.001.001.00--1.001.00-----------1.00----1.00---------------1.00-1.00--------------------
........................................................................................................................................TGAGTTGCAGTAGGGTATCAGCT...........................................................................................23110.0010.00----1.00---------1.00------1.00--------1.00-------1.00------1.001.00--1.00------1.00------1.00-------
........................................................................................................................................TGAGTTGCAGTAGGGTATCA..............................................................................................2014.004.001.00----------------2.00------------------1.00----------------------------------
..................................................................................................................................................................................ATTCCTGCTGTCTGCTTCTCAGA.................................................2314.001.004.00----------------------------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCA..............................................................................................2314.004.00-1.00-------------------1.00--------------------------------1.00-------1.00--------
..................................................................................................................................................................................ATTCCTGCTGTCTGCTTCTCAGTT................................................2414.001.002.00------------1.00----------------------------1.00----------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTAA................................................................................................2113.001.00----------1.00--------1.001.00--------------------------------------------------
.................................................................................................................................................................................................................................GGATCGCTGCTGGTAGAGGAGA...2213.003.00-------1.00-----------------2.00---------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCAG.............................................................................................2413.003.00--------3.00--------------------------------------------------------------
..............................................................................................................................................................................................................................ACTGGATCGCTGCTGGTAGAGGAG....2413.003.00------------1.00---------------1.00-----1.00------------------------------------
......................................................................................................................................ACTGAGTTGCAGTAGGGTATCAGCTTCT........................................................................................2812.002.00-2.00---------------------------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCT..............................................................................................2312.0014.00---------------------------------------------------1.00-------------1.00-----
.......................................................................................................................................................................................................................GATCTTTACTGGATCGCTGCTGGTAG.........2612.002.00-----------1.00----------------------------------------1.00------------------
........................................................................................................................................TGAGTTGCAGTAGGGTATCAGC............................................................................................2212.002.00------1.00----------------------------------1.00-----------------------------
.........................................................................................................................................................................................................................TCTTTACTGGATCGCTGCTGGTAGA........2512.002.00-------------------------------------------1.00-------------1.00-------------
......................................................................................................................................ACTGAGTTGCAGTAGGGTATCA..............................................................................................2212.002.00---1.00-------------------------------------------1.00-----------------------
........................................................................................................................................TGAGTTGCAGTAGGGTATCAGCA...........................................................................................2311.002.00----1.00------------------------------------------------------------------
.......................................................................................................................................CTGAGTTGCAGTAGGGTATCA..............................................................................................2111.001.00----1.00------------------------------------------------------------------
........................................................................................................................................TGAGTTGCAGTAGGGTATCAGCTAGC........................................................................................2611.0010.00-------------------------------------------------------1.00---------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCAGA............................................................................................2511.003.00----------------------------------------------------------------1.00------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTA.................................................................................................2011.001.00------1.00----------------------------------------------------------------
........................................................................................................................................TGAGTTGCAGTAGGGTAGAA..............................................................................................201.000.00----------------1.00------------------------------------------------------
.....................................................CGGTCCTATCTGAGCTCAGAGA...............................................................................................................................................................................2211.001.00---------------------------------1.00-------------------------------------
..............................................................................................................................................................................................................................ACTGGATCGCTGCTGGTAGAGG......2211.001.00-------------------------------------------------------------1.00---------
..........................................................................................................................................................................................................................CTTTACTGGATCGCTGCTGG............2011.001.00-----1.00-----------------------------------------------------------------
......................................................................................................................................ACTGAGTTGCAGTAGGGTAT................................................................................................2011.001.00-----------------------------------------------------------1.00-----------
.....................................................................................................................................................................................................................................CGCTGCTGGTAGAGGAGA...1811.001.00--------------------------1.00--------------------------------------------
....................................................................................................................................................................................TCCTGCTGTCTGCTTCTCAGTT................................................221.000.00-----------------------------------1.00-----------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATA...............................................................................................2211.0016.00-----------------------------1.00-----------------------------------------
...................................................................................................................................................................................................................................ATCGCTGCTGGTAGAGGAGAAGT2311.001.00----------------------1.00------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGGAT................................................................................................211.000.00-1.00---------------------------------------------------------------------
........................................................................................................................................TGAGTTGCAGTAGGGTATCAGCTT..........................................................................................2411.001.00---1.00-------------------------------------------------------------------
..................................................................................................................................................................................ATTCCTGCTGTCTGCTTCTCCGTT................................................241.000.00-------------1.00---------------------------------------------------------
...................................................................................................................................................................................TTCCTGCTGTCTGCTTCTCAGTT................................................231.000.00-------------------------------------1.00---------------------------------
.........................................................................................................................................................................................................GACACCATGTGGCGGATCTT.............................2011.001.00------------------------1.00----------------------------------------------
................................................................................................................................................................................TGATTCCTGCTGTCTGCTTCT.....................................................2111.001.00------------------------------------------------------------------1.00----
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCG..............................................................................................2311.0014.00------------------1.00----------------------------------------------------
................................................CTTTCCGGTCCTATCTGAGCTCAGAGAC..............................................................................................................................................................................2811.001.00------------------------1.00----------------------------------------------
...........................................................................................................................................GTTGCAGTAGGGTATCGG.............................................................................................181.000.00-------1.00---------------------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTAAAG..............................................................................................2311.001.00------------1.00----------------------------------------------------------
................................................................................................................................................................................................................................TGGATCGCTGCTGGTAGAGGAG....2211.001.00---------------1.00-------------------------------------------------------
......................................................................................................................................ACTGAGTTGCAGTAGGGTATCAGCT...........................................................................................2511.001.00----------------------------------------------------------1.00------------
...................................................................................................................TTAGAGCCTCTGTGGTGATACTGAGTTGCAGTAGGG...................................................................................................3611.001.00-------------------------------------------------------------------1.00---
......................................................................................................................................ACTGAGTTGCAGTAGGGTATCAGCTTTT........................................................................................281.000.00-1.00---------------------------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGT..................................................................................................1911.001.00------------------------------------------------------------1.00----------
...............................................................................................................................................................................................................................CTGGATCGCTGCTGGTAGAG.......2011.001.00-----1.00-----------------------------------------------------------------
....................................................................................................................................................................................TCCTGCTGTCTGCTTCTCATGA................................................221.000.00----------------1.00------------------------------------------------------
...............................................................................................................................................................................................................................CTGGATCGCTGCTGGTAGAGG......2111.001.00-----1.00-----------------------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCTT.............................................................................................2411.0014.00----------------------1.00------------------------------------------------
.....................................................................................................................................TACTGAGTTGCAGTAGGGTATCAGCT...........................................................................................2611.001.00-------------------------------1.00---------------------------------------
............................................................................................................................................................................................................................TTACTGGATCGCTGCTGGTAGAGGAG....2611.001.00-----------------------------------------------------1.00-----------------
...................................................................................................................................................AGGGTATCAGCTTCTGATGCT..................................................................................2111.001.00--------------------------------------------1.00--------------------------
..................................................................................................................................................................................ATTCCTGCTGTCTGCTTCTCAG..................................................2211.001.00------1.00----------------------------------------------------------------
..................................................................................................................................................................................ATTCCTGCTGTCTGCTTCT.....................................................1920.500.50---------------------------------------------------------------------0.50-
.........CAGTATATATCTTTAC.................................................................................................................................................................................................................................1640.250.25----------------------------------------------------------------------0.25

Antisense strand
AGTCTTACCCAGTATATATCTTTACATTTGCTTTTGCCATTGTATATACTTTCCGGTCCTATCTGAGCTCAGAGACTGGGCTTTCTTAATGATGCTCCGTTTCCCATTGTCATCATTAGAGCCTCTGTGGTGATACTGAGTTGCAGTAGGGTATCAGCTTCTGATGCTAATGTGTCTGATTCCTGCTGTCTGCTTCTCAGGGACACCATGTGGCGGATCTTTACTGGATCGCTGCTGGTAGAGGAGAAGT
.......................................................................................................................................(((((..(((((((((.((((......(((((....))))))))))))))))))......)))))..................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		SRR189786TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM541797(GSM541797)
differentiated human embryonic stem cells. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR191498(GSM715608)
3genomic small RNA (size selected RNA from to. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
........................................................................................................................................................ATCAGCTTCTGATGCTTTG............................................................................... 191.000.00-------1.00---------------------------------------------------------------