ID: uc001ndn.3_intron_5_0_chr11_46890265_r
GENE: (32)
chr11:46890215-46890588-


(2)
BRAIN
(1)
BREAST
(2)
CELL-LINE
(5)
CERVIX
(2)
LIVER
(1)
OTHER
(9)
SKIN

Sense strand
TGTGGAAGGACTCATGGATATCATCGTGGTTTCCCCTCAGCGGCAGACAGGTGGGCTCCCGGGTACTGAGCCTGCTTCCTTAACATCTGTGGGATTGGTCGGTCAACCCAAGGACTGTTAGGGACCAAGACAGTTAGGGCCACAAGAGAGCTTCTTGGTTCACATTTTAAACGCTTAGAACTTTTTACTCCCTCGCGGTTGTATCTCTCCTCCTCCCCTGTCCCTGGGAGTAGGGTAATCCTGGATTTCCTCTGTTTTTGAGAAGCCTTAAATTGGGAGACCTGATTCTGTCCCAGATAAGACATTCATCTACTTTGCCTCCAGGGACCAATGCCTGTGGTGTGAACAATGGTGGCTGCACCCACCTCTGCTTT
............................................................................((((((((((((.((((.((((....)))))))).))).)))))))))(((.(((((...(((......(((((......(((((................)))))...(((..((....))..))).))))).....))))))))..)))...................................................................................................................................................
............................................................................77......................................................................................................................................................229...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSE20417(GSM514985)
Colon and lung cancer pool.
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532886(GSM532886)
G850T. (cervix)
SRR040042(GSM532927)
G428N. (cervix)
SRR343334SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR189783SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040022(GSM532907)
G575N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR343335SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343337TAX577743(Rovira)
total RNA. (breast)
..............................................................................................................................................................................................................CTCCTCCTCCCCTGTCTCC.....................................................................................................................................................1952.000.0052.00---------------------------
.................................................................................................................................................................................................................................................................................................................................................TGGTGTGAACAATGGTGGCT.................2012.002.00------1.00---------1.00-----------
....GAAGGACTCATGGATATCATCGTG..........................................................................................................................................................................................................................................................................................................................................................2412.002.00-1.00--------------------1.00-----
.........................................................................................................................................................................................................TATCTCTCCTCCTCCCTAG..........................................................................................................................................................192.000.00---------1.00-----------1.00------
...................................................................................................................................................................................................CGGTTGTATCTCTCCTTAA................................................................................................................................................................191.000.00----1.00-----------------------
.................................................................................AACATCTGTGGGATTATGA..................................................................................................................................................................................................................................................................................191.000.00------------1.00---------------
...............................................................................................................................................................................................................................................................................................................................................TGTGGTGTGAACAATGGTGGCT.................2211.001.00-1.00--------------------------
...............................................................................................................................................................................................................................................................................................................................................TGTGGTGTGAACAATGGTGG...................2011.001.00-------------------------1.00--
.GTGGAAGGACTCATGGATATCATC.............................................................................................................................................................................................................................................................................................................................................................2411.001.00-----1.00----------------------
............................................................................................................................................................................................................................................................................................................................................GCCTGTGGTGTGAACAATGGTGGCT.................2511.001.00------1.00---------------------
......................ATCGTGGTTTCCCCTCCA..............................................................................................................................................................................................................................................................................................................................................181.000.00--------1.00-------------------
...............................................................................TTAACATCTGTGGGATTGGTCGGTCAACCC.........................................................................................................................................................................................................................................................................3011.001.00-1.00--------------------------
..........................................................................................................................................................................................................................................................TCTGTTTTTGAGAAGAGGT.........................................................................................................191.000.00-----------------1.00----------
...............................................................................................................................................................................................................TCCTCCTCCCCTGTCTCCG....................................................................................................................................................191.000.00--------------------1.00-------
...................................................................................CATCTGTGGGATTGGGG..................................................................................................................................................................................................................................................................................171.000.00----------1.00-----------------
.GTGGAAGGACTCATGGATATC................................................................................................................................................................................................................................................................................................................................................................2111.001.00-1.00--------------------------
.........................................................................................................................................................................................................................................................................................................................................AATGCCTGTGGTGTGAACAATGGTGGCTGCACC............3311.001.00-1.00--------------------------
................................CCCCTCAGCGGCAGACAGGGAC................................................................................................................................................................................................................................................................................................................................221.000.00-------------------1.00--------
..........................................................................................................................................................................................................................................................................................................................................ATGCCTGTGGTGTGAACAATGGTGGCTGCACC............3211.001.00-1.00--------------------------
.........................................................................................................................................................................................................................................................................................................................................AATGCCTGTGGTGTGAACAATGGTGGC..................2711.001.00-1.00--------------------------
......................................................................................................................................................................................................................................................................................................................................................TGAACAATGGTGGCTGCACC............2011.001.00-----1.00----------------------
..................................................................................................................................................................................................................................................................................................................................................GGTGTGAACAATGGTGGCTGC...............2111.001.00-1.00--------------------------
.........................................................................................................................................................................................................................................................................................................................................AATGCCTGTGGTGTGAACAATGGT.....................2411.001.00-1.00--------------------------
...............................................................................................................................................................................................................................................................................................................................................TGTGGTGTGAACAATGGTGGC..................2111.001.00-1.00--------------------------
........................................................................................................................GGGACCAAGACAGTTCAA............................................................................................................................................................................................................................................181.000.00-----------1.00----------------
.................................................GGTGGGCTCCCGGGTCCT...................................................................................................................................................................................................................................................................................................................181.000.00-------1.00--------------------
..........................................................................................................................................................................................................................................................................................................................................ATGCCTGTGGTGTGAACAATGGTGGC..................2611.001.00-1.00--------------------------
.............................................................................................................................................................................................................................................................................................................................................CCTGTGGTGTGAACAATGGTGGC..................2311.001.00-1.00--------------------------
......................................................................................................................................................................................................................................................................................................................................................TGAACAATGGTGGCTGCAGC............201.000.00-1.00--------------------------
...................................................................................................................................................................................................................................................................................................................................................GTGTGAACAATGGTGGCT.................1811.001.00--------------1.00-------------
...........................................................................................................................................................................................................TCTCTCCTCCTCCCCTACCC.......................................................................................................................................................201.000.00--------------------------1.00-
.........................................................................................................................................................................................................................................................................................................TAAGACATTCATCTACAACT.........................................................201.000.00------------------------1.00---
.......................................................................................................................................................................................................................................................................................................................................................GAACAATGGTGGCTGCAG.............181.000.00-----------------------1.00----
.........................................................................................................................................................................................................................................................................................................................................AATGCCTGTGGTGTGAACAATGGTGGCTGCAC.............3211.001.00-1.00--------------------------
................................................................................................................................................................................................................................................................................................................................................................TGGCTGCACCCACCTCCGA...191.000.00-------------1.00--------------
...................................................................................................................................................................................................................................................................................................................................................GTGTGAACAATGGTGGCTGCA..............2111.001.00-1.00--------------------------

Antisense strand
TGTGGAAGGACTCATGGATATCATCGTGGTTTCCCCTCAGCGGCAGACAGGTGGGCTCCCGGGTACTGAGCCTGCTTCCTTAACATCTGTGGGATTGGTCGGTCAACCCAAGGACTGTTAGGGACCAAGACAGTTAGGGCCACAAGAGAGCTTCTTGGTTCACATTTTAAACGCTTAGAACTTTTTACTCCCTCGCGGTTGTATCTCTCCTCCTCCCCTGTCCCTGGGAGTAGGGTAATCCTGGATTTCCTCTGTTTTTGAGAAGCCTTAAATTGGGAGACCTGATTCTGTCCCAGATAAGACATTCATCTACTTTGCCTCCAGGGACCAATGCCTGTGGTGTGAACAATGGTGGCTGCACCCACCTCTGCTTT
............................................................................((((((((((((.((((.((((....)))))))).))).)))))))))(((.(((((...(((......(((((......(((((................)))))...(((..((....))..))).))))).....))))))))..)))...................................................................................................................................................
............................................................................77......................................................................................................................................................229...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSE20417(GSM514985)
Colon and lung cancer pool.
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532886(GSM532886)
G850T. (cervix)
SRR040042(GSM532927)
G428N. (cervix)
SRR343334SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR189783SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040022(GSM532907)
G575N. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR343335SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343337TAX577743(Rovira)
total RNA. (breast)
..............................................................................................................................................................................................................................................TCCTGGATTTCCTCTGG....................................................................................................................... 174.000.00--4.00-------------------------
.....................................................................CCCACAGATGTTAAGGAAGCAGGC......................................................................................................................................................................................................................................................................................... 2411.001.00---1.00------------------------
............................................................................................................................................................................................................CTCTCCTCCTCCCCTGTGC....................................................................................................................................................... 191.000.00------------------1.00---------
...................................................................GAGCCTGCTTCCTTAACC................................................................................................................................................................................................................................................................................................. 181.000.00---------------1.00------------
............................................................GGGTACTGAGCCTGCCCCG....................................................................................................................................................................................................................................................................................................... 191.000.00----1.00-----------------------
...................................................................................................................................AGTTAGGGCCACAAGATATG............................................................................................................................................................................................................................... 201.000.00---------------------------1.00
.........................................................................................................................................................................................................................................................................................................................TGGTCCCTGGAGGCAAA............................................ 1730.330.33-------0.33--------------------