ID: uc001mys.1_intron_2_0_chr11_45674157_r.3p
GENE: (1)
chr11:45674107-45674356-


(4)
B-CELL 		(5)
BRAIN 		(5)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(8)
LIVER 		(2)
OTHER 		(7)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGCTTTCTCGCCTGTGAAGTGGGCAGATATTGGCTTCCACATCTGGTTCTTGCTAGAAGGACACGAGCTGATGCAGGGAAGGGGCTTGGCGCAAAACTGTCAACTGAGATAATGTGGCGATCTTGGTGTTTTAATTCAGACTCTATGAGGTGCATCGAGGTCAGGAATGCTCCCTGGTCCACTTTCGCTTTGAGTTTCAGGTAGCTGGTGTCACTTCGGTGTGGTTGGAAGAAGACTTTCTCCCCAGCTG
........................................................................(((.......((.((((((......)))))))).............(((((((((((.....((((.......))))..))))))))))).....)))................................................................................
.....................................................................70...................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189782SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................AGGGAAGGGGCTTGGCGGAA............................................................................................................................................................20110.003.00-2.00---1.002.00-2.001.00-1.00----1.00-----------------------------
..........................................................................AGGGAAGGGGCTTGGCGGA.............................................................................................................................................................1917.003.00-3.00----------------1.00---1.00------1.00--------1.00-------
...........................................................................GGGAAGGGGCTTGGCAGAA............................................................................................................................................................196.000.00--3.00-3.00-----------------------------------------
...........................................................................GGGAAGGGGCTTGGCGGAA............................................................................................................................................................1914.001.00-1.00---1.00---------1.00------------------1.00-----------
...........................................................................GGGAAGGGGCTTGGCGGA.............................................................................................................................................................1814.001.00------1.00--1.00-----1.00------------------------1.00-----
...........................................................................GGGAAGGGGCTTGGCGGAAT...........................................................................................................................................................2013.001.00--1.00-1.00-1.00---------------------------------------
..........................................................................AGGGAAGGGGCTTGGCGGAAT...........................................................................................................................................................2113.003.00-1.00------1.00--------1.00----------------------------
..........................................................................AGGGAAGGGGCTTGGCG...............................................................................................................................................................1713.003.00-----2.00-------------------1.00--------------------
.......................................................................................................................................................................................................................TCGGTGTGGTTGGAAGAAGACT.............2212.002.00----------2.00-----------------------------------
...........................................................................GGGAAGGGGCTTGGCGG..............................................................................................................................................................1712.001.00-----------1.00---------1.00------------------------
.....................................................TAGAAGGACACGAGCTGATGCAGGGAAGT........................................................................................................................................................................292.000.002.00---------------------------------------------
.................................................TTGCTAGAAGGACACGAGCTGATGCAGGGAA..........................................................................................................................................................................3111.001.001.00---------------------------------------------
..............................................................................AAGGGGCTTGGCGCAAAACTGTC.....................................................................................................................................................2311.001.00-------1.00--------------------------------------
......................................................................................................................................................................................................................TTCGGTGTGGTTGGAAGAAGTCT.............231.000.00-------------------------------------1.00--------
...................................................................................................................................TAATTCAGACTCTATGAGGTGCATCG.............................................................................................2611.001.00------------------------------------1.00---------
..........................................................................AGGGAAGGGGCTTGGCGGCA............................................................................................................................................................2011.003.00--------------------1.00-------------------------
.................................................................................................................................................TGAGGTGCATCGAGGTCAGGCG...................................................................................221.000.00---1.00------------------------------------------
........................................................................................................................................................................................................................CGGTGTGGTTGGAAGAAGAC..............2011.001.00--------------1.00-------------------------------
.................................................TTGCTAGAAGGACACGAGCTGATGCAGGGC...........................................................................................................................................................................301.000.001.00---------------------------------------------
...........................................................................GGGAAGGGGCTTGGCG...............................................................................................................................................................1611.001.00-----------------------------------1.00----------
...........................................................................GGGAAGGGGCTTGGCGGT.............................................................................................................................................................1811.001.00--------------------------------1.00-------------
.................................................TTGCTAGAAGGACACGAGCTGATGCAGGGA...........................................................................................................................................................................3011.001.001.00---------------------------------------------
...........................................................................GGGAAGGGGCTTGGCGGCA............................................................................................................................................................1911.001.00---------------------------------1.00------------
..........................................................................AGGGAAGGGGCTTGGCGGTT............................................................................................................................................................2011.003.00------------------------1.00---------------------
......................................................................................................................................................................................................................TTCGGTGTGGTTGGAAGAAGACTT............2411.001.00--------------1.00-------------------------------
.................................................................................................................................................TGAGGTGCATCGAGGGCAG......................................................................................191.000.00---1.00------------------------------------------
...............................................................................AGGGGCTTGGCGCAATTGG........................................................................................................................................................191.000.00----------------------------1.00-----------------
..........................................................................AGGGAAGGGGCTTGGCGGTTT...........................................................................................................................................................2111.003.00-------------1.00--------------------------------
.................................................................................................................................................................................TCCACTTTCGCTTTGGTT.......................................................181.000.00---------------------------------------1.00------
.................................................................................................................................................TGAGGTGCATCGAGGTCTGGT....................................................................................211.000.00---1.00------------------------------------------
.....TCTCGCCTGTGAAGTGGGCAGATATTGGC........................................................................................................................................................................................................................2911.001.001.00---------------------------------------------
...........................................................................GGGAAGGGGCTTGGCGGTA............................................................................................................................................................1911.001.00-------------1.00--------------------------------
.........................................................................................................................................................................................................................GGTGTGGTTGGAAGAAGACTTT...........2211.001.00-----------------------1.00----------------------
....................................................................................................................................................................................................................ACTTCGGTGTGGTTGGAAG...................1911.001.00-------------------1.00--------------------------
......................................................................ATGCAGGGAAGGGGCTTGGCGC..............................................................................................................................................................2211.001.00-------1.00--------------------------------------
............................................................................................................................................................................................................................GTGGTTGGAAGAAGACTT............1811.001.00-------1.00--------------------------------------
..........................................................................AGGGAAGGGGCTTGGCGTAA............................................................................................................................................................2011.003.00--------------------------1.00-------------------
.................................................................................................................................................TGAGGTGCATCGAGGCAG.......................................................................................181.000.00---1.00------------------------------------------
..................................................TGCTAGAAGGACACGAGCTGATGCA...............................................................................................................................................................................2511.001.00------------1.00---------------------------------
..........................................................................................................................................................................................................................GTGTGGTTGGAAGAAGACTT............2011.001.00------------1.00---------------------------------
...........................................................................................................................................................................................................................TGTGGTTGGAAGAAGATTTG...........201.000.00-------------------------------1.00--------------
.......................................................................................................................................................................................................................TCGGTGTGGTTGGAAG...................1620.500.50------------------------------------------0.50---
............................................................................GGAAGGGGCTTGGCG...............................................................................................................................................................1530.330.33-----------------------------------------0.33----
.............................................GTTCTTGCTAGAAGG..............................................................................................................................................................................................1540.250.25-----------------------------------------0.25----
..........................................................................................................................................................................................................................GTGTGGTTGGAAGAAG................1650.200.20--------------------------------------------0.20-
................................................................................................................................................................................GTCCACTTTCGCTTT...........................................................1550.200.20-------------------------------------------0.20--
......CTCGCCTGTGAAGTGG....................................................................................................................................................................................................................................1660.170.17---------------------------------------------0.17

Antisense strand
GGCTTTCTCGCCTGTGAAGTGGGCAGATATTGGCTTCCACATCTGGTTCTTGCTAGAAGGACACGAGCTGATGCAGGGAAGGGGCTTGGCGCAAAACTGTCAACTGAGATAATGTGGCGATCTTGGTGTTTTAATTCAGACTCTATGAGGTGCATCGAGGTCAGGAATGCTCCCTGGTCCACTTTCGCTTTGAGTTTCAGGTAGCTGGTGTCACTTCGGTGTGGTTGGAAGAAGACTTTCTCCCCAGCTG
........................................................................(((.......((.((((((......)))))))).............(((((((((((.....((((.......))))..))))))))))).....)))................................................................................
.....................................................................70...................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189782SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................GCGATCTTGGTGTTTTGGGT.................................................................................................................. 201.000.00---------------------------1.00------------------
..................................................................................................................................................................................................TTTCAGGTAGCTGGTGTATG.................................... 201.000.00------------------------------1.00---------------
............................................ATCAGCTCGTGTCCTTCTAGCAAGAACC.................................................................................................................................................................................. 2811.001.001.00---------------------------------------------