ID: uc001mwr.1_intron_2_0_chr11_36516598_r.5p
GENE: (5)
chr11:36518458-36518707-


(1)
BRAIN
(1)
BREAST
(24)
CELL-LINE
(3)
FIBROBLAST
(1)
HEART
(4)
HELA
(1)
KIDNEY
(2)
LIVER
(2)
OTHER
(21)
SKIN
(1)
XRN.ip

Sense strand
AGGTTTCTTGTGACAACTGTGCTGCATCAATGGCATTTGAAGATAAAGAGGCATGTACTAACTTGGATTTGTTAAATTCACTACTTCTTAAAATATTGTTCTTAAATGTGTACTTGAGGGGGTTAGCAGTAGATAAGGATGTGACTCCGACTCTGAGTCTACATTATCAATTTTGGGAAAAATGATTTTTAAGAAAAAGAAGGTTCAATAAGCCATTTTAGTACATAAGTGTAGAATTTGTTTTGCATGT
............................................................(((..((.(((......((((...((((((...((((((((((((........))))))......))))))..)))))).))))...))).))..)))............................................................................................
........................................................57...................................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189782
...................................................................................................................................GATAAGGATGTGACTCCGACTCTGAGT............................................................................................27179.0079.0010.0015.0016.00--3.002.005.002.004.003.001.00-3.001.00-2.00-2.001.001.00---1.002.00-------1.00--1.00---1.00-1.00---------1.00-------
..................................................................................................................................AGATAAGGATGTGACTCCGACTCTGAGTCTA.........................................................................................31139.0039.0012.00--5.009.003.00--2.00------1.00--------1.00---2.00--1.00-------1.00-1.00---1.00--------------
...................................................................................................................................GATAAGGATGTGACTCCGACTCTGAGTCTA.........................................................................................30119.0019.003.00--5.00------1.00---2.00------2.00-2.00-----------1.00--1.00-----1.00--------1.00------
...................................................................................................................................GATAAGGATGTGACTCCGACTCTGAGTCT..........................................................................................29110.0010.007.00----------------------------1.00--------------------1.00----1.00----
....................................................................................................................................ATAAGGATGTGACTCCGACTCTGAGTCTA.........................................................................................2917.007.00-6.00-----------------1.00----------------------------------------
..................................................................................................................................AGATAAGGATGTGACTCCGACTCTGAGTCT..........................................................................................3015.005.003.00-----1.00--------1.00--------------------------------------------
........................................AGATAAAGAGGCATGTACTAACTTGGATTTG...................................................................................................................................................................................3112.002.00-----------------2.00------------------------------------------
.............................................................CTTGGATTTGTTAAAGA............................................................................................................................................................................172.000.00--------------------1.00-------------------------1.00-------------
..................................................................................................................................AGATAAGGATGTGACTCCGACTCTGAGT............................................................................................2812.002.00------1.00-------------------------1.00---------------------------
............................................AAAGAGGCATGTACTAACTTG.........................................................................................................................................................................................2112.002.00-----------------------------------------------1.00------1.00-----
...................................................................................................................................GATAAGGATGTGACTCCGACTCGAGT.............................................................................................262.000.00------------2.00-----------------------------------------------
...................................................................................................................................GATAAGGATGTGACTCCGACTCT................................................................................................2311.001.00-----------1.00------------------------------------------------
.......................................................................................................................................AGGATGTGACTCCGACTCTGGGT............................................................................................231.000.001.00-----------------------------------------------------------
.........................................................................................................................................................................................................................TTAGTACATAAGTGTAGAATTTGTT........2511.001.00-------------------------------------------1.00----------------
.....................................................................................................................................................................ATCAATTTTGGGAAAAATT..................................................................191.000.00----------------------1.00-------------------------------------
.................................................................................................................................TAGATAAGGATGTGACTCCGACTCTGAGTCTA.........................................................................................3211.001.001.00-----------------------------------------------------------
.........................................................CTAACTTGGATTTGTGGGT..............................................................................................................................................................................191.000.00----------------------1.00-------------------------------------
....................................................................................................................................ATAAGGATGTGACTCCGACTCTGAGT............................................................................................2611.001.00------1.00-----------------------------------------------------
............................................................................TTCACTACTTCTTAAACC............................................................................................................................................................181.000.00--------------------------------------------------------1.00---
...................................................................................................................................GATAAGGATGTGACTCCGACTCTG...............................................................................................2411.001.00-----------1.00------------------------------------------------
......................................................................................................................................AAGGATGTGACTCCGACTCTGAGTC...........................................................................................2511.001.00-------------------------------------------------1.00----------
...................................TTTGAAGATAAAGAGGCATG...................................................................................................................................................................................................2011.001.00---------------------------------------------------1.00--------
...................................................................................................................................GATAAGGATGTGACTCCGACTCTGAGTCTACATTA....................................................................................3511.001.00---1.00--------------------------------------------------------
.............................................................CTTGGATTTGTTAAAGACG..........................................................................................................................................................................191.000.00----------------------------------1.00-------------------------
..................................................................................................................TGAGGGGGTTAGCAGAATT.....................................................................................................................191.000.00---1.00--------------------------------------------------------
....................................................................................................................AGGGGGTTAGCAGTACAA....................................................................................................................181.000.00--1.00---------------------------------------------------------
...................................................................................................................................GATAAGGATGTGACTCCGACTCTGAGTCTACA.......................................................................................3211.001.00---1.00--------------------------------------------------------
............ACAACTGTGCTGCATCAATG..........................................................................................................................................................................................................................2020.500.50-----------------------------------------------------------0.50
........TGTGACAACTGTGCTGCATCAATGGC........................................................................................................................................................................................................................2620.500.50----------------------------------------------------------0.50-

Antisense strand
AGGTTTCTTGTGACAACTGTGCTGCATCAATGGCATTTGAAGATAAAGAGGCATGTACTAACTTGGATTTGTTAAATTCACTACTTCTTAAAATATTGTTCTTAAATGTGTACTTGAGGGGGTTAGCAGTAGATAAGGATGTGACTCCGACTCTGAGTCTACATTATCAATTTTGGGAAAAATGATTTTTAAGAAAAAGAAGGTTCAATAAGCCATTTTAGTACATAAGTGTAGAATTTGTTTTGCATGT
............................................................(((..((.(((......((((...((((((...((((((((((((........))))))......))))))..)))))).))))...))).))..)))............................................................................................
........................................................57...................................................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189782
...........................................................................................................................................................................................TTTAAGAAAAAGAAGTTAG............................................ 193.000.00--------------------------2.00------------------------------1.00--
............................................AGTTAGTACATGCCTCTTT........................................................................................................................................................................................... 1912.002.00---------------------------2.00--------------------------------
...........................................................................................................................TAGCAGTAGATAAGGCTG............................................................................................................. 181.000.00------------1.00-----------------------------------------------
..........................................................................................................TGTGTACTTGAGGGGAAGT............................................................................................................................. 191.000.00-------------------------------------1.00----------------------
.............CAACTGTGCTGCATCAATCTA........................................................................................................................................................................................................................ 211.000.00------------------------------------------------1.00-----------
..............................................................................................................................................................................................AAGAAAAAGAAGGTTTCTG......................................... 191.000.00------------------------------1.00-----------------------------