ID: uc001mvg.2_intron_16_0_chr11_34118844_f
GENE: (17)
chr11:34118794-34119294+


(1)
AGO2.ip
(1)
AGO3.ip
(7)
B-CELL
(2)
BRAIN
(15)
BREAST
(26)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(6)
HEART
(4)
HELA
(5)
LIVER
(2)
OTHER
(19)
SKIN
(1)
TESTES
(2)
XRN.ip

Sense strand
ATACACAGTCTCAGTTCAGTGCTCCCCGGGATTACTCTGGCTATCAACGGGTAGGTAAAGTAGTTCTAAAGTGTAAACCTGAACTAAATATACCAATGAAAGTGACTTAGTGTTGTTGCTTAATGAACCTAAGTAACTAATTTGGCGTTAACTTTGTGGTGTCCAAGACACTCTGTTGAAACAAAAGCTTTTAGCACTCAACATCAGTACTCCTTTAGTAAAGCCTGTTAAAGACAGTGATTTCCAAGAGCAGAGAAATATATTTCACTGAATGTTCTTTGAGAATAGTAGAAGTACAACAATTACAGAACAAGGTGTAGCTGTGATAAACTGATACTGAAGTGTCTAAAAGATTAAGGAAGAATTCTGTATTGAGTGTTAGACTGAAAGAATAGATGGGTAAGCATTTTTTAAAAAGTACCTTTTCAATACTAACTAGCTTGTCTTTTAGGATGGATATCAGCAGAATTTCAAGCGAGGCTCTGGGCAGAGTGGACCACG
............................................................................................................................................................................................................................................................................................................................................(((((....)))))(((((((.((((..((......((((((((......(((.....((.(((((......))))).))....))).....))))))))...))..)))))))))))...................................................
..........................................................................................................................................................................................................................................................................................................................................331.....................................................................................................................451................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR343337SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553576(SRX182782)
source: Testis. (testes)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR343336SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR029130(GSM416759)
DLD2. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR040008(GSM532893)
G727N. (cervix)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR343335
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTAACTAGCTTGTCTTTTAG..................................................24119.0019.006.00--------3.00----------1.00------------------2.00-1.00--1.00-----1.00-1.00---------1.00-----1.00--------1.00------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTAACTAGCTTGTCTTTTAG..................................................2519.009.00-----------------1.00----------2.00----------------1.00---1.00---------1.00----------1.00------------1.00-1.00----------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGAGGCTCTGGGCAGAG.........2119.009.008.00------------------------------------------1.00----------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCTCTGGGCAGAGTGG......2018.008.00--8.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCAGCAGAATTT..............................1817.007.00-----3.00----1.00-------------------1.00----------------------------------1.00-------------------------1.00----
...............................................................................................................................................................................................................................................................................................................................................ACTGAAGTGTCTAAAACATC..................................................................................................................................................206.000.00-6.00----------------------------------------------------------------------------------------------
................................TACTCTGGCTATCAACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.005.00--5.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATATCAGCAGAATTT..............................1915.005.00-----1.00----2.00-------------------------------------------------1.00------------------1.00----------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAATACTAACTTG..............................................................175.000.00-------------4.00------------------1.00---------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................GGAAGAATTCTGTATTGAGTGTTA........................................................................................................................2413.003.00-------3.00----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGCTCTGGGCAGAGCGG......223.000.00---3.00--------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................CTGAAGTGTCTAAAACATC..................................................................................................................................................193.000.00-3.00----------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGATATCAGCAGAATTTCA............................2213.003.00---------------------1.00---2.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................ACTGAAGTGTCTAAAACAT...................................................................................................................................................193.000.00-3.00----------------------------------------------------------------------------------------------
........................CCCGGGATTACTCTGGCTATCAACGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................283.000.00-------------------3.00----------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATTTCAAGCGAGGCTCTGGGCAGAGTG.......3213.003.00--------------3.00---------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGGCTCTGGGCAGAGTGG......2312.002.00--------------------------2.00---------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGCTCTGGGCAGA..........1812.002.00------2.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGATATCAGCAGAATTT..............................2012.002.00-----2.00------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTTTTCAATACTAACTAG..............................................................2112.002.00-----------------------------------2.00------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGGCTCTGGGCAGAGTAA......232.000.00---------------------------------2.00--------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGGCTCTGGGCAGA..........1912.002.00----1.00----------------------------------------------------------------1.00--------------------------
...........................GGGATTACTCTGGCTATCAACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002.00------1.00-----1.00-----------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATATCAGCAGAATTTCAAGCGAGG.....................2812.002.00-------2.00----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGCGAGGCTCTGGGCAGAG.........2312.002.002.00-----------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCAAGCGAGGCTCTGGGCAGAGTGGA.....3012.002.00--------1.00--------------------------------------------------------------1.00------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCTCTGGGCAGAGTGGAC....2312.002.00------------1.00----------------------------------------1.00------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAGAATTCTGTATTGAGTGTTAG.......................................................................................................................2912.002.00--------------------------------------2.00---------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCAGCAGAATTTT.............................1912.007.00-----1.00----1.00-------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGGCTCTGGGCAGAGTGGACC...2612.002.00----1.00-----------1.00-------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAACTAGCTTGTCTTTTAG..................................................2312.002.00-----------------2.00------------------------------------------------------------------------------
............................GGATTACTCTGGCTATCAACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002.00----------------------------------------2.00-------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTAACTAGCTTGTCTTTTAGT.................................................2512.0019.00---------2.00--------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGCTCTGGGCAGAGTGGACC...2512.002.00----1.00-------------------------------1.00-----------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAGCGAGGCTCTGGGCAGAGTGG......2812.002.00---1.00---1.00----------------------------------------------------------------------------------------
.........CTCAGTTCAGTGCTCCCCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002.00-------2.00----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAGCGAGGCTCTGGGCAGAGCGG......281.000.00---1.00--------------------------------------------------------------------------------------------
...................................................................AAAGTGTAAACCTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00-1.00----------------------------------------------------------------------------------------------
..............................................................GTTCTAAAGTGTAAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-----------------------1.00------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAGAATTCTGTAT.................................................................................................................................1911.001.00----------------------------------------------------------1.00-------------------------------------
.................................ACTCTGGCTATCAACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------------------------------1.00---------------------------------------
.....................CTCCCCGGGATTACTCTGGCTATCAACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00------------------------------------------1.00-----------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTAACTAGCTTGTCTTTTAT..................................................241.000.00-----------------------------------------1.00------------------------------------------------------
......................TCCCCGGGATTACTCTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00---------------------------1.00--------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTCAAGCGAGGCTCTGGGCAGAGTGG......3011.001.00----------------------------------------------------------------------------------1.00-------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTTCAAGCGAGGCTCTGGGCAGA..........2711.001.00-------------------------------------------1.00----------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGAGGCTCTGGGCAGAGTGGACCACG3011.001.00--------1.00---------------------------------------------------------------------------------------
..............................................ACGGGTAGGTAAAGTAGTTCTAAAGTGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00----1.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGGATGGATATCAGCAGAATCTC.............................271.000.00---1.00--------------------------------------------------------------------------------------------
................................................GGGTAGGTAAAGTAGTTTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------------------------------------------------1.00-------------------------------
......................TCCCCGGGATTACTCTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------------1.00----------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................GTGTTAGACTGAAAGAATAGATGGGTAAGCAT..............................................................................................3211.001.00---------------------------------------------------1.00--------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGCTCTGGGCAGAGTGGA.....2311.001.00----1.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACTAACTAGCTTGTCTTTTAT..................................................251.000.00---------------------------------------------1.00--------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTCAAGCGAGGCTCTGG...............2111.001.00-----------------------------1.00------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATACTAACTAGCTTGTCTTTTAG..................................................2711.001.00------1.00-----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................ACTGAAGTGTCTAAACCAT...................................................................................................................................................191.000.00-1.00----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAGCGAGGCTCTGGGCAGAGTGGA.....2811.001.00----1.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTTAGGATGGATATCAGCAGAA.................................2611.001.00----------------------------------------------------------------------------------------1.00-------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGCGAGGCTCTGGG..............1811.001.00-------------------------------------------------------------------1.00----------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCAGCAGAATTTCAAGCGAGG.....................2711.001.00----------------------1.00-------------------------------------------------------------------------
....ACAGTCTCAGTTCAGTGCTCCCCGGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00---1.00--------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................AGACTGAAAGAATAGATGGGTAAGCAT..............................................................................................2711.001.00-----------------------------1.00------------------------------------------------------------------
.....................................TGGCTATCAACGGGTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-----------------------1.00------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATACTAACTAGCTTGTCTTTTAG..................................................2611.001.00------------------------------------------------------------------------------------1.00-----------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAGCGAGGCTCTGGGCAGA..........2311.001.00------1.00-----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................TTGAGAATAGTAGAAGTACAACAATTA....................................................................................................................................................................................................2711.001.00------------------------------------------------------1.00-----------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGCTCTGGGCAGAGTGGACCACG2811.001.00------------1.00-----------------------------------------------------------------------------------
..............................ATTACTCTGGCTATCAACGGGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-------------------------------------------------------1.00----------------------------------------
.......GTCTCAGTTCAGTGCTCCCCGGGATTACTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00----1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................AGACTGAAAGAATAGATGGGTAA..................................................................................................2311.001.00-----------1.00------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCAAGCGAGGCTCTGG...............2011.001.00-----1.00------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................GAGTGTTAGACTGAAAGAATAGATGGGTAAGCA...............................................................................................3311.001.00------------------------------------------------1.00-----------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTCAAGCGAGGCTCTGGGCAGAG.........2711.001.00----------------1.00-------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAATACTAACTATAAT...........................................................191.000.00--------------------------------------------------------------------------------------------1.00---
.........................CCGGGATTACTCTGGCTATCAACGGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00----------------1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCAAGCGAGGCTCTGGGCAG...........2411.001.00--------------------------------------------------------------------------1.00---------------------
.............GTTCAGTGCTCCCCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00--------1.00---------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGCGAGGCTCTGGGCAGAGTG.......2411.001.00------1.00-----------------------------------------------------------------------------------------
..........................CGGGATTACTCTGGCTATCAACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-------------------------------------------------------------1.00----------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCAAGCGAGGC....................1511.001.00--------------------------------------------------------------------------------1.00---------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCAGCAGAATTTC.............................1911.001.00------------------------------1.00-----------------------------------------------------------------
......................TCCCCGGGATTACTCTGGCTATCAACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00------------------------------------------1.00-----------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................AAGGAAGAATTCTGTATTGAGTGT..........................................................................................................................2411.001.00--------------------1.00---------------------------------------------------------------------------
.................AGTGCTCCCCGGGATTACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-----------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................TGAGTGTTAGACTGAAAGAATAG..........................................................................................................2311.001.00------1.00-----------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................AGGTGTAGCTGTGATAAACT.........................................................................................................................................................................2011.001.00-----------1.00------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................GAGTGTTAGACTGAAAGAATAGATGGGTAAG.................................................................................................3111.001.00----------------------------------1.00-------------------------------------------------------------
...........................GGGATTACTCTGGCTATCAACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----------------------------------1.00-------------------------------------------------------------
...............TCAGTGCTCCCCGGGATTACTCTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00--------------------1.00---------------------------------------------------------------------------
..........................CGGGATTACTCTGGCTATCAACGGGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................291.000.00------------------------1.00-----------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAGCGAGGCTCTGGGCAGAG.........2411.001.00----1.00-------------------------------------------------------------------------------------------
..............................ATTACTCTGGCTATCAACGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------1.00-----------------
.............................................................................................................GTGTTGTTGCTTAATGAACC....................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------------------------------1.00---------------------------------------------------
....................................................................................................................................................................AAGACACTCTGTTGATGTC..............................................................................................................................................................................................................................................................................................................................191.000.00----------------------1.00-------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATTTCAAGCGTTGG....................191.000.00------------------------------------------------------------------------------------------1.00-----
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGCTCTGGGCAGAGTGGAC....2411.001.00---------------------------------------------------------1.00--------------------------------------
.......................................................................................................................................................................................................................................................................................TGAGAATAGTAGAAGTACAAC.........................................................................................................................................................................................................2111.001.00---1.00--------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGGCTCTGGGCAGAGTGG......2211.001.00------1.00-----------------------------------------------------------------------------------------
.............................GATTACTCTGGCTATCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----------------------------------------------1.00-------------------------------------------------
......................................................................................................................................................................................................................................AAGACAGTGATTTCCAAGAGCAG........................................................................................................................................................................................................................................................2311.001.00--------------------------------------------------------------------------------------1.00---------
......................................................................................................................................................................................................................................................................................................................................................................................AGTGTTAGACTGAAAGAATAGATGG......................................................................................................2511.001.00---------------------------1.00--------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTCAAGCGAGGCT...................1711.001.00------------------------1.00-----------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................GTTAGACTGAAAGAATAGATGGGTAAGCATTTTT..........................................................................................3411.001.00--------------1.00---------------------------------------------------------------------------------
..............TTCAGTGCTCCCCGGGATTACTCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00---1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTAACTAGCTTGTCTTCTAG..................................................241.000.001.00-----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................TGTCTAAAAGATTAAGCC.............................................................................................................................................181.000.00---------------------------------------------------------------------------1.00--------------------
...........................GGGATTACTCTGGCTATCAACGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.002.00-----------------------------------------------1.00------------------------------------------------
...........................GGGATTACTCTGGCTATCAACGGGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.002.00----1.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGGATATCAGCAGAACTTC.............................231.000.00---1.00--------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................AGATTAAGGAAGAATTCTG....................................................................................................................................1911.001.00-----------------------------------------------------------------------------------------1.00------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGAGGCTCTGGGCC............181.000.00--------1.00---------------------------------------------------------------------------------------
...................TGCTCCCCGGGATTACTCTGGCTACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00---1.00--------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGGCAGAGTGGACCACG2111.001.00-----1.00------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGCAGAATTTCGA...........................171.000.00---------------------------------------------------------------------------------------------1.00--
.........................................................................................................................................................................................................................................................................................................................................................................GAATTCTGTATTGAGTGTTAGA......................................................................................................................2211.001.00-----------1.00------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................AAAGACAGTGATTTCCAAGAG...........................................................................................................................................................................................................................................................2111.001.00------------1.00-----------------------------------------------------------------------------------
..............................ATTACTCTGGCTATCAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------1.00-----------------------------------------------------------------------------
........................CCCGGGATTACTCTGGCTATCAACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-------------------------------------1.00----------------------------------------------------------
....................................................................................................................................................................................................CTCAACATCAGTACTCCT...............................................................................................................................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------1.00--------------
..................................................................................................................................................................................................................................................................................................................................................................................................AAAGAATAGATGGGTAAGCATTTTCTA........................................................................................271.000.00------------------------------------1.00-----------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGCGAGGCTCTGGGCA............1911.001.00-------------------------------1.00----------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGGCTCTGGGCAG...........1811.001.00----1.00-------------------------------------------------------------------------------------------
................................................................................................TGAAAGTGACTTAGTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------1.00-----------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGATATCAGCAGAATTA..............................201.000.00----------1.00-------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGATATCAGCAGAATTT..............................2111.001.00---------------------1.00--------------------------------------------------------------------------
.........................CCGGGATTACTCTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00----------------------------------------------------------------------------1.00-------------------
............................................................................................................................................................................................................................................................................................................................................................................................AGACTGAAAGAATAGATGGGTAAGCATT.............................................................................................2811.001.00-------------------------------------1.00----------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGGCTCTGGGCAGAGTGGAGC...261.000.00-----------1.00------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGATATCAGCAGAATTTCAAGCGAGG.....................3011.001.00--------1.00---------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................ACTGAAGTGTCTAAAACCTC..................................................................................................................................................201.000.00-1.00----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCAGCAGAATTTCAAGCGAGGCTC..................3011.001.00---------------------------------------------------------------1.00--------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCTCTGGGCAGAGTGGA.....2211.001.00----1.00-------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAGGCTCTGGGCAGAGTGGAC....2511.001.00------------------------------------------------------------------1.00-----------------------------
............................GGATTACTCTGGCTATCAACGGGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00--------1.00---------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................TACTGAAGTGTCTAATTG.....................................................................................................................................................181.000.00---------------1.00--------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGATATCAGCAGAATTTC.............................2211.001.00---------------------1.00--------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATCAGCAGAATTTC.............................1820.500.50----------------------0.50-------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCTCTGGGCA............1590.220.22-----------------------0.11-----------------------0.11------------------------------------------------
...........................................................................................................................................................................................................................................AGTGATTTCCAAGAGC..........................................................................................................................................................................................................................................................1650.200.20----------------------------------------------0.20-------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCTCTGGGCAG...........1660.170.17----------------------------------------------------------------------------------------------0.17-

Antisense strand
ATACACAGTCTCAGTTCAGTGCTCCCCGGGATTACTCTGGCTATCAACGGGTAGGTAAAGTAGTTCTAAAGTGTAAACCTGAACTAAATATACCAATGAAAGTGACTTAGTGTTGTTGCTTAATGAACCTAAGTAACTAATTTGGCGTTAACTTTGTGGTGTCCAAGACACTCTGTTGAAACAAAAGCTTTTAGCACTCAACATCAGTACTCCTTTAGTAAAGCCTGTTAAAGACAGTGATTTCCAAGAGCAGAGAAATATATTTCACTGAATGTTCTTTGAGAATAGTAGAAGTACAACAATTACAGAACAAGGTGTAGCTGTGATAAACTGATACTGAAGTGTCTAAAAGATTAAGGAAGAATTCTGTATTGAGTGTTAGACTGAAAGAATAGATGGGTAAGCATTTTTTAAAAAGTACCTTTTCAATACTAACTAGCTTGTCTTTTAGGATGGATATCAGCAGAATTTCAAGCGAGGCTCTGGGCAGAGTGGACCACG
............................................................................................................................................................................................................................................................................................................................................(((((....)))))(((((((.((((..((......((((((((......(((.....((.(((((......))))).))....))).....))))))))...))..)))))))))))...................................................
..........................................................................................................................................................................................................................................................................................................................................331.....................................................................................................................451................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029124(GSM416753)
HeLa. (hela)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR343337SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553576(SRX182782)
source: Testis. (testes)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR343336SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR029130(GSM416759)
DLD2. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR040008(GSM532893)
G727N. (cervix)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR343335
............AGTTCAGTGCTCCCCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00---------------------------------------------------------------------------------------1.00--------
..............................................................................................................................................................................................................................................................................................AGTAGAAGTACAACATTG..................................................................................................................................................................................................... 181.000.00------------------1.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAGAATTTCAAATT........................ 181.000.00------------------------------------------------------------------------1.00-----------------------
..............................................................................................................................................................................................................................................................................................................................AGCTGTGATAAACTGATCTAT.................................................................................................................................................................. 211.000.00---------------1.00--------------------------------------------------------------------------------
............AGTTCAGTGCTCCCCATTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................AAAAGATTAAGGAAGCCAT....................................................................................................................................... 191.000.00--------------------------------1.00---------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATTTCAAGCGAGGC.................... 181.000.00-------------------------------------------------------------------------1.00----------------------
....................................................................................................................................................................................................................................................................AAGAACATTCAGTGAAATA.............................................................................................................................................................................................................................. 1911.001.00-----1.00------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................CCATCTATTCTTTCAG...................................................................................................... 1670.140.14-----------------------------------------------------------------------------------------------0.14