ID: uc001mkg.1_intron_2_0_chr11_12316405_f.3p
GENE: MICALCL(3)
chr11:12341043-12341292+


(1)
AGO1.ip OTHER.mut 		(4)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(17)
CELL-LINE 		(11)
CERVIX 		(2)
HEART 		(7)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(21)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCCAGAAATGTAATTAACATGGAGGGCCAAATTTTCAGTTGCCCTTAGGTACTGTTGCCTCATGCTCACGGCAGGTGCAGTGAGGGGAGGGCAGGGAGGAAGGGAATGAGAGTAAGTGGGGGAGGAGGAAGCAGCAGCTTTGGTTCATAAAGCAGGAAATGAAGCTAGCAGTTCATTGAGTTTTTCTGTTCCCATTTCAGACTCCAAGAACTTTCCCCTCAGAGCACAGGTAACAGAGGCTTCCTCTTCT
...........................................................................(((...........................((....))..((.............)).)))..................................................................................................................
...........................................................................76............................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040009(GSM532894)
G727T. (cervix)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR040041(GSM532926)
G612T. (cervix)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
...................................................................................................................GTGGGGGAGGAGGAAGGCG....................................................................................................................19042.001.0010.00-1.001.003.002.00-3.001.002.002.00--2.00---2.002.00---1.00--1.00---1.00---1.00-------1.00-1.00------1.00-1.00-1.00--1.00------1.00---
...................................................................................................................GTGGGGGAGGAGGAAGGCGG...................................................................................................................20029.001.00--4.00-1.001.003.00-1.00--1.00----2.00---1.001.00-1.001.00--1.00---1.001.00----1.001.00-----1.00---1.00-------1.00---1.001.001.001.00----
...................................................................................................................GTGGGGGAGGAGGAAGGC.....................................................................................................................18012.001.00---3.00-1.00--1.00-----1.00-----------1.00--------1.00---1.00-------1.00-1.00---1.00--------------
...................................................................................................................GTGGGGGAGGAGGAA........................................................................................................................1504.004.00-4.00------------------------------------------------------------------
....................................................................................................................TGGGGGAGGAGGAAG.......................................................................................................................1503.003.00-1.00--------------------------1.00----------------------1.00----------------
...................................................................................................................GTGGGGGAGGAGGAAGATG....................................................................................................................1901.001.00------------------------------------1.00-------------------------------
...................................................................................................................GTGGGGGAGGAGGAAGGCT....................................................................................................................1901.001.00--------------1.00-----------------------------------------------------
....................................................................................................................TGGGGGAGGAGGAAGCGC....................................................................................................................181.000.00---------------1.00----------------------------------------------------
...........................................................................................................................................................................................................CCAAGAACTTTCCCCTGC.............................181.000.00------------1.00-------------------------------------------------------
................................................................................TGAGGGGAGGGCAGGCTCG.......................................................................................................................................................191.000.00------------1.00-------------------------------------------------------
...................................................................................GGGGAGGGCAGGGAGGAAGAA..................................................................................................................................................211.000.00----------------------------------------1.00---------------------------
.............................................................................................................GAGTAAGTGGGGGAGGGGC..........................................................................................................................191.000.00---------------------------------------------1.00----------------------
...................................................................................................................GTGGGGGAGGAGGAAGGCAA...................................................................................................................2001.001.00-------------------------------------------------------1.00------------
...................................................................................................................GTGGGGGAGGAGGAAG.......................................................................................................................1601.001.00-1.00------------------------------------------------------------------
...................................................................................................................GTGGGGGAGGAGGAAGGTG....................................................................................................................1901.001.00----------------------------------1.00---------------------------------
.......................................TGCCCTTAGGTACTGTATT................................................................................................................................................................................................191.000.00-------------------1.00------------------------------------------------
.............................................................................................................................................................................................................AAGAACTTTCCCCTCAGAGCACAGGTAACAG..............3111.001.00----------------------------------------------------------1.00---------
..................................................................................AGGGGAGGGCAGGGAGGAAA....................................................................................................................................................201.000.00-----------1.00--------------------------------------------------------
............................................................................................................................................................................................................CAAGAACTTTCCCCTCAGA...........................1920.500.50-----------------------------------------------------------------0.50--
..........................................................................................................................................................................................................TCCAAGAACTTTCCCC................................1650.200.20-------------------------------------------------------------------0.20

Antisense strand
CCCAGAAATGTAATTAACATGGAGGGCCAAATTTTCAGTTGCCCTTAGGTACTGTTGCCTCATGCTCACGGCAGGTGCAGTGAGGGGAGGGCAGGGAGGAAGGGAATGAGAGTAAGTGGGGGAGGAGGAAGCAGCAGCTTTGGTTCATAAAGCAGGAAATGAAGCTAGCAGTTCATTGAGTTTTTCTGTTCCCATTTCAGACTCCAAGAACTTTCCCCTCAGAGCACAGGTAACAGAGGCTTCCTCTTCT
...........................................................................(((...........................((....))..((.............)).)))..................................................................................................................
...........................................................................76............................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040009(GSM532894)
G727T. (cervix)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR040041(GSM532926)
G612T. (cervix)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
........................................................................................GGGCAGGGAGGAAGGGAATT.............................................................................................................................................. 201.000.00-----------------------------------------------------------1.00--------
.............................................................................................................................................................................................................AAGAACTTTCCCCTCTTT........................... 181.000.00------------------------------------------1.00-------------------------
..............................................................................................................................................................................................CCCATTTCAGACTCCAGGTT........................................ 201.000.00------------------------------1.00-------------------------------------
.......................................................................................................................................................GCAGGAAATGAAGCTCGGG................................................................................ 191.000.00---------------1.00----------------------------------------------------
.....................................................................................................................................................................................................................................AGGAAGCCTCTGTTAC..... 1640.250.25------------------------------------------------------------------0.25-