ID: uc001mif.3_intron_8_0_chr11_9879944_r.3p
GENE: SBF2(16)
chr11:9879894-9880143-


(4)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(2)
HEART
(1)
OTHER
(1)
RRP40.ip
(5)
SKIN
(1)
UTERUS

Sense strand
AGACTCTCAAGGATCCAACAGCAAGCCCACAGTTGCCAGTTAAAAAGGAGTAAGTTGCTGATTGCTAAGCCTGTACTACCATACGATATTCTTTAGAGAAATCCTTTGATCTCATCTATGATTAACTGTGGCCCCTGTGACCTTATGAACTGTTATAATTCTGCCAGCCCCATGATGATGTATTTTGTGTGTTCTCACAGAAACTTGCCCCTGGAGTCAGCCAGTTTGCTTACACGTGTGTACAAGACCA
........................................................((.....)).....((((.....(((((((......((((((.....))))))..(((((.(((........((((...((((((..........)))))).....))))....))))))))......))))))).....))))..................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR029128(GSM416757)
H520. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189784SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR343337TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
........................................................GCTGATTGCTAAGCCTGA................................................................................................................................................................................18139.0012.0025.007.00--6.00-1.00--------------------
........................................................GCTGATTGCTAAGCCTG.................................................................................................................................................................................17112.0012.0010.00-----2.00--------------------
........................................................GCTGATTGCTAAGCCATC................................................................................................................................................................................186.000.00--6.00------------------------
........................................................GCTGATTGCTAAGCCTGATT..............................................................................................................................................................................2015.0012.004.00--1.00-----------------------
........................................................GCTGATTGCTAAGCCTGATC..............................................................................................................................................................................2015.0012.00--5.00------------------------
........................................................GCTGATTGCTAAGCCTGATTT.............................................................................................................................................................................2115.0012.00---4.00-----1.00-----------------
........................................................GCTGATTGCTAAGCCTGC................................................................................................................................................................................1812.0012.002.00--------------------------
............................................................................................................................................................................TGATGATGTATTTTGTATAG..........................................................201.000.00----------------------1.00----
....................................................................................................................................................ACTGTTATAATTCTGCCTTAT.................................................................................211.000.00-----------------------1.00---
......................................................TTGCTGATTGCTAAGCCTGTACTACCATACG.....................................................................................................................................................................3111.001.00------------------1.00--------
........................................................GCTGATTGCTAAGCCTGAAAA.............................................................................................................................................................................2111.0012.00----------1.00----------------
....................................CAGTTAAAAAGGAGTAAGTTGC................................................................................................................................................................................................2211.001.00--------------1.00------------
....................................................................GCCTGTACTACCATACGATATTC...............................................................................................................................................................2311.001.00-------------------1.00-------
........................................................GCTGATTGCTAAGCCTGATA..............................................................................................................................................................................2011.0012.00-1.00-------------------------
.....................................................................................................................................CCTGTGACCTTATGAACTGTTATAATTCTGC......................................................................................3111.001.00------------1.00--------------
...................................................................AGCCTGTACTACCATACGATATTCTTTAGAGAA......................................................................................................................................................3311.001.00----------------1.00----------
..................................................................................................................................................GAACTGTTATAATTCCC.......................................................................................171.000.00------------------------1.00--
........................................................GCTGATTGCTAAGCCTGAT...............................................................................................................................................................................1911.0012.00---1.00-----------------------
.......................................TTAAAAAGGAGTAAGTGTTT...............................................................................................................................................................................................201.000.00---------------1.00-----------
................................................................................................................................................ATGAACTGTTATAATTC.........................................................................................1720.500.50--------------------------0.50

Antisense strand
AGACTCTCAAGGATCCAACAGCAAGCCCACAGTTGCCAGTTAAAAAGGAGTAAGTTGCTGATTGCTAAGCCTGTACTACCATACGATATTCTTTAGAGAAATCCTTTGATCTCATCTATGATTAACTGTGGCCCCTGTGACCTTATGAACTGTTATAATTCTGCCAGCCCCATGATGATGTATTTTGTGTGTTCTCACAGAAACTTGCCCCTGGAGTCAGCCAGTTTGCTTACACGTGTGTACAAGACCA
........................................................((.....)).....((((.....(((((((......((((((.....))))))..(((((.(((........((((...((((((..........)))))).....))))....))))))))......))))))).....))))..................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR029128(GSM416757)
H520. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189784SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR343337TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
........................................................GCTGATTGCTAAGCCTCA................................................................................................................................................................................ 189.000.003.005.00----1.00--------------------
........................................................GCTGATTGCTAAGCCTGCA............................................................................................................................................................................... 1918.000.001.005.00----1.00--1.00-----------------
..................................................................................................................CACAGGGGCCACAGTTAATCATAGA............................................................................................................... 2516.006.00-----6.00---------------------
..................................................................................................AAATCCTTTGATCTCAAGGG.................................................................................................................................... 205.000.00-------4.00---1.00---------------
............................................................................................................................................................................TGATGATGTATTTTGACG............................................................ 181.000.00-----------------1.00---------
...........................................................................................................................................................................................................................................GTGTGTACAAGACCAC 161.000.00---------------------1.00-----
.........................................................................................GATGAGATCAAAGGATTTCTCTAAAGA...................................................................................................................................... 2711.001.00--------------------1.00------
............................................................................................................................................................AATTCTGCCAGCCCCATCGCG......................................................................... 211.000.00--------1.00------------------
.......................................................CAGGCTTAGCAATCAGCA................................................................................................................................................................................. 1811.001.00-1.00-------------------------
............................................................................................................................................................AATTCTGCCAGCCCCATCACT......................................................................... 211.000.00--------1.00------------------
..TGTTGGATCCTTGAGAGT...................................................................................................................................................................................................................................... 1811.001.00-------------1.00-------------
................................................................................................................................................................CATCATGGGGCTGGCAG......................................................................... 1720.500.50-------------------------0.50-