ID: uc001mhm.2_intron_4_0_chr11_9310083_r.3p
GENE: (3)
chr11:9310033-9310282-


(3)
AGO2.ip 		(13)
BREAST 		(31)
CELL-LINE 		(6)
CERVIX 		(1)
HEART 		(1)
HELA 		(4)
LIVER 		(1)
OTHER 		(15)
SKIN 		(1)
XRN.ip

Sense strand
TGTCTTGGAAACCTTTTAGTAGCACACACTTACTAGTATTTATGATACTGTTTAGTAAATGGTCAACTTAGAGGCTAGACCTTTGGATATAATCTCATTGTATGATAATTTTTGTATTTATACTTTTTTCCTGAAATGTTACATTTGTCTTTTAAAATTCTACTTAATTATATTCTAATCCTTAACTTAAAAGTTACCAGCTTGCAAACATTTGCTATTCCAGGCTCTATATTTCTCAGTATACTCTCAG
.....................................................................(((((.....)))))(((((((((......((((((............))))))..........(((((...)))))....................))))))))).......(((((....)))))......................................................
.....................................................................70................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037938(GSM510476)
293Red. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343337SRR029129(GSM416758)
SW480. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189784SRR037935(GSM510473)
293cand3. (cell line)		SRR343336GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359200(GSM359200)
hepg2_tap_pasr_a. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		GSM359201(GSM359201)
hepg2_tap_pasr_b. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
.................................................................................................................................................................................ATCCTTAACTTAAAAGTTACCAGA.................................................24163.0014.0012.0012.003.004.009.003.00---3.001.00-1.00---3.001.001.001.002.00-2.00----1.00-----1.001.00--1.00-----------1.00-------------------------
................................................................................................................................................................................AATCCTTAACTTAAAAGTTACCAGA.................................................25129.0012.00--5.004.00-2.00-5.00--2.00-1.00--2.00--------1.00----1.00----------1.00--------------1.00--1.001.00----1.00-------1.00--
.................................................................................................................................................................................ATCCTTAACTTAAAAGTTACCAGAA................................................25114.0014.00--1.00--1.00---3.00--------------1.002.00---1.00------1.00-----------1.00--1.001.00----------------1.00-----
.................................................................................................................................................................................ATCCTTAACTTAAAAGTTACCAG..................................................23114.0014.00--2.00-----5.00---1.00-------------2.00-------------------1.001.00-----------------1.00-1.00-------
................................................................................................................................................................................AATCCTTAACTTAAAAGTTACCAG..................................................24112.0012.00--------2.00----------2.00-----------1.001.00--1.00--1.00----1.00----------------1.00--1.00------1.00----
................................................................................................................................................................................AATCCTTAACTTAAAAGTTACCAGAA................................................2618.0012.00---2.00---3.00------------1.00-----------------------------------1.00----------------1.00-
......................................................................................................................................................................................................................CTATTCCAGGCTCTATATTTCTCAGA..........265.000.00--------------3.00--------2.00---------------------------------------------------
................................................................................................................................................................................AATCCTTAACTTAAAAGTTACCAGAAA...............................................2714.0012.00-----4.00---------------------------------------------------------------------
.................................................................................................................................................................................ATCCTTAACTTAAAAGTTACCAGAG................................................2513.0014.00---------------1.00----------------------------------1.00----------1.00-------------
.................................................................................................................................................................................ATCCTTAACTTAAAAGTTACCATA.................................................242.000.00------------------1.00--------1.00-----------------------------------------------
............................................................................................................................................................................................................CAAACATTTGCTATTCCAGG..........................2012.002.00-----------------2.00---------------------------------------------------------
.................................................................................................................................................................................ATCCTTAACTTAAAAGTTACCGGA.................................................241.000.00----1.00----------------------------------------------------------------------
................................................................................................................................................................................AATCCTTAACTTAAAAGTTACCAGT.................................................2511.0012.00--------------------------------------------------------------1.00------------
..............................................................................................................................................................................CTAATCCTTAACTTAAAAGTTACCAGAA................................................281.000.00------------------------------------------------------1.00--------------------
.............................................................................................................................................................................TCTAATCCTTAACTTAAAAGTTACCAGAG................................................291.000.00---------------------------------------1.00-----------------------------------
...................................................................................................................................................................................CCTTAACTTAAAAGTTACCAGA.................................................221.000.00------------------1.00--------------------------------------------------------
..........................................................................CTAGACCTTTGGATATAATCTCACTG......................................................................................................................................................261.000.00------------------------------1.00--------------------------------------------
.................................................................................................................................................................................ATCCTTAACTTAAAAGTTACAAGA.................................................241.000.001.00--------------------------------------------------------------------------
...........CCTTTTAGTAGCACACTG.............................................................................................................................................................................................................................181.000.00---------------------------------------------1.00-----------------------------
..............................................................................................................................................................................CTAATCCTTAACTTAAAAG.........................................................1911.001.00--------------------------------------------1.00------------------------------
.................................................................................................................................................................................ATCCTTAACTTAAAAGTTACCAGT.................................................2411.0014.00------------1.00--------------------------------------------------------------
.....................................................................................................................................................TTTTAAAATTCTACTTCAAG.................................................................................201.000.00------------------------------1.00--------------------------------------------
..........................................................................CTAGACCTTTGGATATAATC............................................................................................................................................................2011.001.00--------------------------------------------------------------------1.00------
.................................................................................................................................................................................ATCCTTAACTTAAAAGTTACCAGAAA...............................................2611.0014.00---------------------------------------------------------1.00-----------------
..........................................................................................................................................................................................................................TCCAGGCTCTATATTTCTCAG...........2111.001.00--------------1.00------------------------------------------------------------
................................................................................................................................................................................AATCCTTAACTTAAAAGTTACTAGA.................................................251.000.00----------1.00----------------------------------------------------------------
.................................................................................................................................................................................ATCCTTAACTTAAAAGTTA......................................................1920.500.50----------0.50----------------------------------------------------------------

Antisense strand
TGTCTTGGAAACCTTTTAGTAGCACACACTTACTAGTATTTATGATACTGTTTAGTAAATGGTCAACTTAGAGGCTAGACCTTTGGATATAATCTCATTGTATGATAATTTTTGTATTTATACTTTTTTCCTGAAATGTTACATTTGTCTTTTAAAATTCTACTTAATTATATTCTAATCCTTAACTTAAAAGTTACCAGCTTGCAAACATTTGCTATTCCAGGCTCTATATTTCTCAGTATACTCTCAG
.....................................................................(((((.....)))))(((((((((......((((((............))))))..........(((((...)))))....................))))))))).......(((((....)))))......................................................
.....................................................................70................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037938(GSM510476)
293Red. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343337SRR029129(GSM416758)
SW480. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189784SRR037935(GSM510473)
293cand3. (cell line)		SRR343336GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359200(GSM359200)
hepg2_tap_pasr_a. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		GSM359201(GSM359201)
hepg2_tap_pasr_b. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
...............................................................................................................................................................................TAATCCTTAACTTAAAAAGAG...................................................... 218.000.00------4.00----1.00-1.00----------------------------1.00-----------------------1.00--------
...............................................................................................................................................................................TAATCCTTAACTTAAAAGAG....................................................... 206.000.00------1.00---1.001.00-2.00--------------1.00----------------------------------------------
...............................................................................................................................................................................TAATCCTTAACTTAAAAGAG....................................................... 205.000.00------2.00----1.00-1.00---------------------------------------1.00---------------------
...............................................................................................................................................................................TAATCCTTAACTTAAAAAG........................................................ 193.000.00------2.00----1.00---------------------------------------------------------------
...............................................................................................................................................................................TAATCCTTAACTTAAAAGAGAG..................................................... 223.000.00----------------------------1.00------------1.00-----------------------------1.00---
...........................................................................................................................................................................ATTCTAATCCTTAACTTATTAG......................................................... 221.000.00---------------------1.00-----------------------------------------------------
...............................................................................................................................................................................TAATCCTTAACTTAAAAAGA....................................................... 201.000.00------1.00--------------------------------------------------------------------
...........................................................................................................................................TACATTTGTCTTTTAAATG............................................................................................ 191.000.00---------------------1.00-----------------------------------------------------
.................................................................................................................................................................................CTTTTAAGTTAAGGAT......................................................... 1650.200.20--------------------------------------------------------------------------0.20