ID: uc001mhm.2_intron_0_0_chr11_9302589_r.3p
GENE: (7)
chr11:9302539-9302788-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO3.ip 		(1)
B-CELL 		(5)
BRAIN 		(4)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(7)
HEART 		(2)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(5)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
ATATTAATGTATAAAATGTAATTGAGTAAATTTTTATCAGAATTTTAAAAATAAAAGAGCTTAGACTCAGTAGAACTCAGTAGAAGCTTCACTATTTACTCCAGCGTGTGTAAATTGTACTTACTCTATTCTCAGAGTATATTTACTGTCCTTACCATTGATTCTTTCCCTTTGCTAATTTTTTTTTTTGTTAATGGTAGCTGCGACTTTAGGTGGGGTATATTTTCTTCTCCTAAGAGAATAGACAGTT
...................................................................(((((((....((((.((....(((...............)))....)).))))((((((......))))))..)))))))....((((((((((...........................))))))))))...................................................
...........................................................60..........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189785SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
..............................................AAAAATAAAAGAGCTGCCG.........................................................................................................................................................................................1916.000.0011.00---3.00-2.00-----------------------------------------
................................................................ACTCAGTAGAACTCAGTAGAAGCT..................................................................................................................................................................2415.005.00-------2.00------2.00------1.00--------------------------
.................................................................CTCAGTAGAACTCAGTAGAAGCT..................................................................................................................................................................2314.004.00---3.00----------------1.00---------------------------
.............................................................TAGACTCAGTAGAACTCAGTAGAAG....................................................................................................................................................................2513.003.00-----------2.00-----------1.00------------------------
..................................................................TCAGTAGAACTCAGTAGAAGCTTC................................................................................................................................................................2413.003.00---2.00----------------------------------------1.00---
.....................................................................GTAGAACTCAGTAGAAGC...................................................................................................................................................................1812.002.00-----1.00----------1.00-------------------------------
.....................................................AAAGAGCTTAGACTCAGTAGAACTC............................................................................................................................................................................2512.002.00-----------1.00----------1.00-------------------------
......................................................................TAGAACTCAGTAGAAGCTTCACT.............................................................................................................................................................2312.002.00-------2.00----------------------------------------
..................................................................TCAGTAGAACTCAGTAGAAGC...................................................................................................................................................................2112.002.00------------1.00-----------1.00-----------------------
......................................................................TAGAACTCAGTAGAAGCTTCA...............................................................................................................................................................2112.002.00----------1.00----------1.00--------------------------
.....................................................................GTAGAACTCAGTAGAAGCT..................................................................................................................................................................1912.002.00------------------------1.00---------1.00-------------
.................................................................CTCAGTAGAACTCAGTAGAAGCTT.................................................................................................................................................................2412.002.00-------------------2.00----------------------------
....................................................AAAAGAGCTTAGACTCAGTAGAACT.............................................................................................................................................................................2512.002.00-1.00---1.00------------------------------------------
..............................................AAAAATAAAAGAGCTGCAG.........................................................................................................................................................................................192.000.00----1.00-1.00-----------------------------------------
........................................................................................................................................GTATATTTACTGTCCTTACCATTGATTCTT....................................................................................3012.002.00------------------2.00-----------------------------
......................................................................TAGAACTCAGTAGAAGCT..................................................................................................................................................................1812.002.00-----------------1.00--1.00---------------------------
........................................AATTTTAAAAATAAAAGAGCTTAGACTCAGTAG.................................................................................................................................................................................3312.002.00---------2.00--------------------------------------
..................................................................TCAGTAGAACTCAGTAGAAGCT..................................................................................................................................................................2212.002.00---1.00--------1.00-----------------------------------
........................................................GAGCTTAGACTCAGTAGAAC..............................................................................................................................................................................2012.002.00-2.00----------------------------------------------
........................................................GAGCTTAGACTCAGTAGAACTCAGTAGAAG....................................................................................................................................................................3011.001.00--------------------------------1.00---------------
.......................................................AGAGCTTAGACTCAGTAGAACTC............................................................................................................................................................................2311.001.00-1.00----------------------------------------------
................................................................ACTCAGTAGAACTCAGTAGAAGC...................................................................................................................................................................2311.001.00---1.00--------------------------------------------
................................................................................................................................................................................................AATGGTAGCTGCGACTTTAGGTGGGG................................2611.001.00--------1.00---------------------------------------
.................................................................................................................................................................................ATTTTTTTTTTTGTTAAAAAT....................................................211.000.00-----------------------------------1.00------------
......................TGAGTAAATTTTTATTAG..................................................................................................................................................................................................................181.000.00------1.00-----------------------------------------
....................................................................AGTAGAACTCAGTAGAAGC...................................................................................................................................................................1911.001.00-----1.00------------------------------------------
..................................................................................GAAGCTTCACTATTTACTCCAGC.................................................................................................................................................2311.001.00--1.00---------------------------------------------
..................................................................................................................................................................................................................AGGTGGGGTATATTTTTTT.....................191.000.00------------------------------------1.00-----------
.........................................................................AACTCAGTAGAAGCTTC................................................................................................................................................................1711.001.00-----1.00------------------------------------------
........................................................GAGCTTAGACTCAGTAGAACTCA...........................................................................................................................................................................2311.001.00-1.00----------------------------------------------
................................................................ACTCAGTAGAACTCAGTAGAAG....................................................................................................................................................................2211.001.00-------------------------------1.00----------------
................................................................................................................................................................................................AATGGTAGCTGCGACTGTT.......................................191.000.00-----------------------------------------1.00------
.................................................................................................................................................................................ATTTTTTTTTTTGTTAATGGTAGGGG...............................................261.000.00--------1.00---------------------------------------
....................................................................................................................................................................................................GTAGCTGCGACTTTAGGTGGGG................................2211.001.00-1.00----------------------------------------------
..............................................AAAAATAAAAGAGCTGCTA.........................................................................................................................................................................................191.000.00----1.00-------------------------------------------
.............................................................TAGACTCAGTAGAACTCAGTAGAAGC...................................................................................................................................................................2611.001.00-----------------------1.00------------------------
.................................................................CTCAGTAGAACTCAGTAGAAG....................................................................................................................................................................2111.001.00-------------1.00----------------------------------
.......................................................................AGAACTCAGTAGAAGCTTCA...............................................................................................................................................................2011.001.00-------------1.00----------------------------------
................................................................................................................................................................................AATTTTTTTTTTTGTTAAGAT.....................................................211.000.00--1.00---------------------------------------------
...................................................................................................................................................................................................GGTAGCTGCGACTTTAGG.....................................1811.001.00--1.00---------------------------------------------
................................................................................................................................................................................................AATGGTAGCTGCGACTTTA.......................................1911.001.00------------------------------------------1.00-----
....................................................................................................................................................TCCTTACCATTGATTCTTTCCCTCGCT...........................................................................271.000.00---------------------------------------1.00--------
........................................................................................................................................................................................................CTGCGACTTTAGGTGGGGTA..............................2011.001.00---------------------------------1.00--------------
.....................................................................GTAGAACTCAGTAGAAGCTTCAC..............................................................................................................................................................2311.001.00--------------------------------------1.00---------
................................................................................................................................................................................................AATGGTAGCTGCGACTTTAGGTGGG.................................2511.001.00----------------------------1.00-------------------
........................................AATTTTAAAAATAAAAGAGCTTAGACTCAGTAGA................................................................................................................................................................................3411.001.00----------------------------------------1.00-------
...............................................................GACTCAGTAGAACTCAGTAGAAG....................................................................................................................................................................2311.001.00-----------------1.00------------------------------
..........................................................................................................................................................................................................GCGACTTTAGGTGGGGTATATTT.........................2311.001.00-1.00----------------------------------------------
....................................................................AGTAGAACTCAGTAGAAGCTTCA...............................................................................................................................................................2311.001.00----------1.00-------------------------------------
................................................................................................................................................................................AATTTTTTTTTTTGTTCGG.......................................................191.000.00--------1.00---------------------------------------
............................................................................................................................................................................................TGTTAATGGTAGCTGCGACTT.........................................2111.001.00--1.00---------------------------------------------
...................................................................CAGTAGAACTCAGTAGAAGCTT.................................................................................................................................................................2211.001.00---------------1.00--------------------------------
............................................................................................................................................................................................................GACTTTAGGTGGGGTATA............................1811.001.00--1.00---------------------------------------------
..................................................................TCAGTAGAACTCAGTAGAAG....................................................................................................................................................................2011.001.00---------------------------------------------1.00--
....................................................................AGTAGAACTCAGTAGAAGCT..................................................................................................................................................................2011.001.00------------------------------1.00-----------------
..............................................AAAAATAAAAGAGCTCCCG.........................................................................................................................................................................................191.000.001.00-----------------------------------------------
................................................................ACTCAGTAGAACTCAGTAGAAGCTT.................................................................................................................................................................2511.001.00----------1.00-------------------------------------
...................................................................CAGTAGAACTCAGTAGAAGCTTC................................................................................................................................................................2311.001.00--------------------------1.00---------------------
......................................................AAGAGCTTAGACTCAGTAGAACTCAGTAGAAGCTT.................................................................................................................................................................3511.001.00---------------------------1.00--------------------
..........................................................................................................................................................................................................GCGACTTTAGGTGGGGTATATT..........................2211.001.00-1.00----------------------------------------------
....................................................AAAAGAGCTTAGACTCAGTAGA................................................................................................................................................................................2211.001.00-1.00----------------------------------------------
........................................................................................................CGTGTGTAAATTGTACTTACTCTATT........................................................................................................................2611.001.001.00-----------------------------------------------
....................................................................AGTAGAACTCAGTAGAAGCTCCAC..............................................................................................................................................................2411.001.00--------1.00---------------------------------------
......................................................................................................AGCGTGTGTAAATTGTACT.................................................................................................................................1911.001.00--1.00---------------------------------------------
...........................................................................................................................................................................................................................ATATTTTCTTCTCCTAAGAGA..........2111.001.00-------------------------------------1.00----------
......................................................................TAGAACTCAGTAGAAGCTTC................................................................................................................................................................2011.001.00-------------------------------------------1.00----
................................................................................................................................................ACTGTCCTTACCATTGATTCT.....................................................................................2111.001.00--1.00---------------------------------------------
....................................TCAGAATTTTAAAAATAAAAGAGCTTAGAC........................................................................................................................................................................................3011.001.00------------1.00-----------------------------------
...................................................................CAGTAGAACTCAGTAGAAGCT..................................................................................................................................................................2111.001.00----------------1.00-------------------------------
...............................................................................................................................................................................TAATTTTTTTTTTTGTTGTG.......................................................201.000.00---------1.00--------------------------------------
.......................................................................AGAACTCAGTAGAAGGA..................................................................................................................................................................171.000.00---------------1.00--------------------------------
..........................................................GCTTAGACTCAGTAGAACTC............................................................................................................................................................................2011.001.00-------------------------1.00----------------------
................................................................................................................................................................................AATTTTTTTTTTTGTTAATGG.....................................................2120.500.50--0.50---------------------------------------------
.................................................................CTCAGTAGAACTCAG..........................................................................................................................................................................1570.140.14-----------------------------------------------0.14
................................................................................................................................................ACTGTCCTTACCATT...........................................................................................1580.120.12---------0.12--------------------------------------

Antisense strand
ATATTAATGTATAAAATGTAATTGAGTAAATTTTTATCAGAATTTTAAAAATAAAAGAGCTTAGACTCAGTAGAACTCAGTAGAAGCTTCACTATTTACTCCAGCGTGTGTAAATTGTACTTACTCTATTCTCAGAGTATATTTACTGTCCTTACCATTGATTCTTTCCCTTTGCTAATTTTTTTTTTTGTTAATGGTAGCTGCGACTTTAGGTGGGGTATATTTTCTTCTCCTAAGAGAATAGACAGTT
...................................................................(((((((....((((.((....(((...............)))....)).))))((((((......))))))..)))))))....((((((((((...........................))))))))))...................................................
...........................................................60..........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189785SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
........................AGTAAATTTTTATCAGATT............................................................................................................................................................................................................... 191.000.00----------------------1.00-------------------------
..........................................TTTTAAAAATAAAAGAGATAG........................................................................................................................................................................................... 211.000.00----------------------------------------------1.00-
................................................................................................................................................................................AATTTTTTTTTTTGTTAATTTTT................................................... 231.000.00-----------------------------1.00------------------