ID: uc001mey.2_intron_0_0_chr11_6947917_f.3p
GENE: (1)
chr11:6948693-6948942+


(2)
B-CELL
(14)
BREAST
(3)
CELL-LINE
(8)
CERVIX
(1)
HELA
(4)
OTHER
(7)
SKIN
(1)
XRN.ip

Sense strand
TTCGAGTTCCTTGCGGCCATAAAACCGTAGAACTGGTGCCACCTGGTTATATTAGTCTAACCATCCACTACAACTTCAGGTCCCTCCGTCACAGTGGTACTGGCTCCGTGTCTTAATCCTGAATCCCACCTTTATATCAGAGGCATCTATTCAGTACTTTAGAGTTTAACTGTTATATTTCCTGGCTTTGTATATTCCAGTGTTCATCATTTGCCACTTAAGCTACTTGCAGTCACGTCACACCTTGGAT
............................................................(((.(((((...((...((....))..))...)))))...)))...................................................................................................................................................
..................................................51.....................................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040039(GSM532924)
G531T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189783SRR040036(GSM532921)
G243N. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR040035(GSM532920)
G001T. (cervix)
SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR191452(GSM715562)
178genomic small RNA (size selected RNA from . (breast)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR038859(GSM458542)
MM386. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR343335
..................................................................................................ACTGGCTCCGTGTCTTCACT....................................................................................................................................2083.000.0046.0016.004.002.00--2.002.002.00--1.00---1.001.00-----1.00--------1.00-1.00-1.001.001.00-
...................................................................................................CTGGCTCCGTGTCTTCCCT....................................................................................................................................194.000.00-------------1.00---1.001.00---------------1.00----
..................................................................................................ACTGGCTCCGTGTCTTCCCT....................................................................................................................................203.000.003.00--------------------------------------
...................................................................................................CTGGCTCCGTGTCTTAACTCC..................................................................................................................................213.000.00----------1.00--------1.00-------1.00-----------
...................................................................................................CTGGCTCCGTGTCTTCAAA....................................................................................................................................192.000.00------------------------1.001.00-------------
.....................................................................................CCGTCACAGTGGTACTGGCTCCG..............................................................................................................................................2312.002.00----2.00----------------------------------
...................................................................................................CTGGCTCCGTGTCTTACTCC...................................................................................................................................202.000.00-----2.00---------------------------------
...................................................................................................CTGGCTCCGTGTCTTAACT....................................................................................................................................191.000.00--------------------1.00------------------
..................................................................................................ACTGGCTCCGTGTCTTCGCT....................................................................................................................................201.000.001.00--------------------------------------
...........................................................ACCATCCACTACAACCACA............................................................................................................................................................................191.000.00---------1.00-----------------------------
..................................................................................................ACTGGCTCCGTGTCTTCACC....................................................................................................................................201.000.001.00--------------------------------------
..................................................................................................ACTGGCTCCGTGTCTTTTT.....................................................................................................................................191.000.001.00--------------------------------------
...................................................................................................CTGGCTCCGTGTCTTCGCT....................................................................................................................................191.000.00---------------------1.00-----------------
........................CCGTAGAACTGGTGCGGAC...............................................................................................................................................................................................................191.000.00----------------------------1.00----------
.......................ACCGTAGAACTGGTGCCAC................................................................................................................................................................................................................1911.001.00--------------------------------1.00------
...................................................................................................CTGGCTCCGTGTCTTAAAAA...................................................................................................................................201.000.00--------------1.00------------------------
...................................................................................................CTGGCTCCGTGTCTTTTAT....................................................................................................................................191.000.00-----------------------1.00---------------
...............................................................TCCACTACAACTTCAGGT.........................................................................................................................................................................1811.001.00------------1.00--------------------------
............................................................CCATCCACTACAACT...............................................................................................................................................................................1550.200.20--------------------------------------0.20

Antisense strand
TTCGAGTTCCTTGCGGCCATAAAACCGTAGAACTGGTGCCACCTGGTTATATTAGTCTAACCATCCACTACAACTTCAGGTCCCTCCGTCACAGTGGTACTGGCTCCGTGTCTTAATCCTGAATCCCACCTTTATATCAGAGGCATCTATTCAGTACTTTAGAGTTTAACTGTTATATTTCCTGGCTTTGTATATTCCAGTGTTCATCATTTGCCACTTAAGCTACTTGCAGTCACGTCACACCTTGGAT
............................................................(((.(((((...((...((....))..))...)))))...)))...................................................................................................................................................
..................................................51.....................................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040039(GSM532924)
G531T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189783SRR040036(GSM532921)
G243N. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR040035(GSM532920)
G001T. (cervix)
SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR191485(GSM715595)
123genomic small RNA (size selected RNA from . (breast)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR191452(GSM715562)
178genomic small RNA (size selected RNA from . (breast)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR038859(GSM458542)
MM386. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR343335
.....................................................................................................GGCTCCGTGTCTTAAG..................................................................................................................................... 161.000.00--------------------------1.00------------
.....................................................................................................GGCTCCGTGTCTTAAGA.................................................................................................................................... 171.000.00------------------------------1.00--------