ID: uc001lts.2_intron_4_0_chr11_1585220_r.3p
GENE: DUSP8(2)
chr11:1585170-1585419-


(1)
AGO2.ip
(1)
BRAIN
(7)
BREAST
(10)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(1)
HELA
(2)
LIVER
(2)
OTHER
(7)
SKIN
(1)
UTERUS

Sense strand
TGGGTGTGTGCATCTGGGCCTCTGGCAGATGGAGGAGAGTGTGTGACTGCACCTGCCCTCCCCTCCAGGCAGCAAGGTGACAGCTGCCTGCCTCCCATCATCTGATGCCCTTACTATTCCCTTGAGCCAGCATATCTGGGACGGGGCCAGGGCATCGATAGGTGGAGGCGGCATGCTGATCTCTGCCCCATGGCCCCCAGGTGGAGGCTACGGAGCCACAGGACGTGGTGGTCTATGACCAGAGCACGCG
..............................................................................................................................................(((((((.((........((..(((((((....))).))))..)))).))))))).....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR189783SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR029130(GSM416759)
DLD2. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
............................................................................................................................................ACGGGGCCAGGGCATCGATAGG........................................................................................2217.007.00---2.00------2.00----1.00-----------1.00----1.00-------
.................................................................................................................................................................................GATCTCTGCCCCATGGCCCCC....................................................2117.007.00-7.00--------------------------------------
...................................................................................................................................ATATCTGGGACGGGGCCAGGGCATCGATAGGTGGAGGCGGCATGCTGATCTCTGCCCCATGGCCCCCAG..................................................6916.006.00--6.00-------------------------------------
...........................................................................................................................................................CGATAGGTGGAGGCGTAG.............................................................................185.000.00------1.001.001.00--------1.00--------1.00-------------
............................................................................................................................................ACGGGGCCAGGGCATCGATAG.........................................................................................2114.004.00---1.00-3.00----------------------------------
.................................................................................................................................................................................GATCTCTGCCCCATGGCCCCCAG..................................................2314.004.002.00---1.00--------------1.00--------------------
.................................................................................................................................................................................GATCTCTGCCCCATGGCCCCCAGT.................................................2413.004.00------------------1.00---1.00-----1.00-----------
.............................................................................................................................................................................TGCTGATCTCTGCCCCATGGCCC......................................................2311.001.00----------------------------------1.00-----
......................................................................................................................................................................................................................................GTCTATGACCAGAGCACCCTG211.000.00-----------1.00----------------------------
................................................................................................................................................................................TGATCTCTGCCCCATGGCCCCCAT..................................................241.000.001.00---------------------------------------
................................................................................................................................................................................TGATCTCTGCCCCATGGCAT......................................................201.000.00-------1.00--------------------------------
.............................................................................................................................................................................TGCTGATCTCTGCCCCATGGCCCCTAA..................................................271.000.001.00---------------------------------------
............................................................................................................................................ACGGGGCCAGGGCATCGA............................................................................................1811.001.00------------1.00---------------------------
.................................................................................................................................................................................GATCTCTGCCCCATGGCAT......................................................1911.001.00------1.00---------------------------------
..........................................................................................................................................................................................................GGAGGCTACGGAGCCACAGGACGTG.......................2511.001.00---------1.00------------------------------
............................................................................................................................................ACGGGGCCAGGGCATCGAT...........................................................................................1911.001.00----------------1.00-----------------------
.................................................................................................................................................................................GATCTCTGCCCCATGGC........................................................1711.001.00----1.00-----------------------------------
.................................................................................................................................................................................GATCTCTGCCCCATGGCCCCCATTTT...............................................261.000.00-------------1.00--------------------------
................................................................................................................................................................................TGATCTCTGCCCCATGGCC.......................................................1911.001.001.00---------------------------------------
.........................................................................................................................................................................................................................ACAGGACGTGGTGGTAGCT..............191.000.00-----------------------------1.00----------
...........................................................................................................................................................CGATAGGTGGAGGCGTA..............................................................................171.000.00--------1.00-------------------------------
.................................................................................................................................................................................GATCTCTGCCCCATGGCCCCCAGA.................................................2411.004.00----1.00-----------------------------------
.................................................................................................................................................................................GATCTCTGCCCCATGGCCCCCTTT.................................................2411.007.00-------------------------------1.00--------
.................................................................................................................................................................................GATCTCTGCCCCATGGCCCC.....................................................2011.001.001.00---------------------------------------
.................................................................................................................................................................................GATCTCTGCCCCATGGCCCCCAGTT................................................2511.004.00---1.00------------------------------------
.................................................................................................................................................................................GATCTCTGCCCCATGGCCCCCATTAA...............................................261.000.00-------------------------1.00--------------
.................................................................................................................................................................................GATCTCTGCCCCATGGCCCCCAGC.................................................2411.004.00---------------------------------1.00------
............................................................................................................................................ACGGGGCCAGGGCATCGATAGGA.......................................................................................2311.007.00----1.00-----------------------------------
..................................................................................................CATCTGATGCCCTTACTA......................................................................................................................................1811.001.00-----------------------1.00----------------
.................................................................................................................................................................................GATCTCTGCCCCATGGCCCCCAGTTAT..............................................2711.004.00---1.00------------------------------------
.................................................................................................................................................................................GATCTCTGCCCCATGGCAC......................................................1911.001.001.00---------------------------------------
.....................................................................................................................................................................................TCTGCCCCATGGCCCCCA...................................................1820.500.50-----------------------------------0.50----
.....................................................................................................................................................................................TCTGCCCCATGGCCCCC....................................................1740.250.25------------------------------------0.25---
...........................................................................................................................................................................................................................AGGACGTGGTGGTCTATGACCAGA.......2450.200.20-----0.20----------------------------------
.......................................................................................................................................................................................................................................TCTATGACCAGAGCACGCG1950.200.20-------------------------------------0.20--
...........................................................................................................................................................................................................................AGGACGTGGTGGTCTATGACCAGAGC.....2650.200.20-----------------------------------0.20----
.........................................................................................................................................................................................................................ACAGGACGTGGTGGTCTATGACCAG........2550.200.20--------------------------------------0.20-
...........................................................................................................................................................................................................................................TGACCAGAGCACGCG1560.170.17---------------------------------------0.17

Antisense strand
TGGGTGTGTGCATCTGGGCCTCTGGCAGATGGAGGAGAGTGTGTGACTGCACCTGCCCTCCCCTCCAGGCAGCAAGGTGACAGCTGCCTGCCTCCCATCATCTGATGCCCTTACTATTCCCTTGAGCCAGCATATCTGGGACGGGGCCAGGGCATCGATAGGTGGAGGCGGCATGCTGATCTCTGCCCCATGGCCCCCAGGTGGAGGCTACGGAGCCACAGGACGTGGTGGTCTATGACCAGAGCACGCG
..............................................................................................................................................(((((((.((........((..(((((((....))).))))..)))).))))))).....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR189783SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR029130(GSM416759)
DLD2. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
................................................GCACCTGCCCTCCCCTCCATGA.................................................................................................................................................................................... 221.000.00------------------------------1.00---------
...................................................CCTGCCCTCCCCTCCAATAG................................................................................................................................................................................... 201.000.00------------------------1.00---------------
....TGTGTGCATCTGGGCCAA.................................................................................................................................................................................................................................... 181.000.00---------1.00------------------------------
........................................................................................................................................................................CGGCATGCTGATCTCTGAG............................................................... 191.000.00---------------------1.00------------------
..........................................................................................................................................GGACGGGGCCAGGGCGCC.............................................................................................. 181.000.00--------------------1.00-------------------
...........................................................................................................................................................................................................................................TGACCAGAGCACGCGGACG 1961.000.00--------------1.00-------------------------
.................................................CACCTGCCCTCCCCTCCTGG..................................................................................................................................................................................... 201.000.00-----------1.00----------------------------