ID: uc001lrb.2_intron_0_0_chr11_767014_r
GENE: (1)
chr11:766964-767343-


(1)
AGO2.ip 		(1)
BRAIN 		(3)
BREAST 		(4)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
LIVER 		(2)
OTHER 		(15)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CAGAGGAGGAAAGCAAGAGGACAGACCTCCAGAAGAGCAGCGGAGGGCGGGTGAGGATTTCCCCATATACCAGTGTGTGTTCATCTACCCATGAGGAATAAAACCATGCAGCAGCATGCAAATGGTGTCCTGGTGTTCGCAGCAGAACTGCTCATGGTAATGGATAAGTTGTTTTCATACAGTGGGTTGTCAATATGTTTAATAATTGTTGGTATCTATTAATAAGGGCAATATATTCATATGGTGGATTATTTGGCTATTAAAATGGAATGAAGTTATTTTTAATAGGATCTTGCTGCATTGCCCTGGCTAGAGTGTGACTATTCACAGGTGCAGTTACTGCTCGCTGCAGCCTTGAACTGGCCTCAAGTGATCCTTCC
..................................................((((((((.....((((((....))))))...))))...(((.((((.....((((((((......))))..)))).)))).))).))))................................................................................................................................................................................................................................................
..................................................51.................................................................................................150....................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189785SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343334SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................CAGCAGCATGCAAATATTG.............................................................................................................................................................................................................................................................1976.000.0069.003.00--3.00----1.00---------------------------
............................................................................................................CAGCAGCATGCAAATAT...............................................................................................................................................................................................................................................................176.000.005.00-----------------------1.00------------
............................................................................................................CAGCAGCATGCAAATATCG.............................................................................................................................................................................................................................................................194.000.003.001.00-----------------------------------
...............................................................................................................................................................................................................GTTGGTATCTATTAATAAGGGCAATA...................................................................................................................................................2614.004.00---4.00---------------------------------
............................................................................................................CAGCAGCATGCAAATATTC.............................................................................................................................................................................................................................................................193.000.003.00------------------------------------
............................................................................................................CAGCAGCATGCAAATACTG.............................................................................................................................................................................................................................................................193.000.003.00------------------------------------
............................................................................................................CAGCAGCATGCAAATTTTG.............................................................................................................................................................................................................................................................192.000.002.00------------------------------------
............................................................................................................CAGCAGCATGCAAATATTT.............................................................................................................................................................................................................................................................192.000.001.001.00-----------------------------------
............................................................................................................CAGCAGCATGCAAATGTTG.............................................................................................................................................................................................................................................................192.000.001.001.00-----------------------------------
..............................................................................................................................................................................................................................................................................................AGGATCTTGCTGCATTGCCCTGGC......................................................................2412.002.00-----2.00-------------------------------
............................................................................................................CAGCAGCATGCAAATAATG.............................................................................................................................................................................................................................................................192.000.002.00------------------------------------
.............................................................................................AGGAATAAAACCATGCAGCAGC.........................................................................................................................................................................................................................................................................2212.002.00-------2.00-----------------------------
............................................................................................................CAGCAGCATGCAAATAGTC.............................................................................................................................................................................................................................................................192.000.002.00------------------------------------
.........................CCTCCAGAAGAGCAGCGGAG...............................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------------1.00----------
............................................................................................................CAGCAGCATGCAAATAAAA.............................................................................................................................................................................................................................................................191.000.001.00------------------------------------
.AGAGGAGGAAAGCAACATA........................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------1.00----------------
............................................................................................................CAGCAGCATGCAAATATAG.............................................................................................................................................................................................................................................................191.000.001.00------------------------------------
..............................................................................................................GCAGCATGCAAATGGTGTCCTGGTGTTC..................................................................................................................................................................................................................................................2811.001.00-------------------------1.00-----------
................................AAGAGCAGCGGAGGGCGGGTGAGGATCTCC..............................................................................................................................................................................................................................................................................................................................301.000.00--1.00----------------------------------
.......................................................................................................................................................................................................TAATAATTGTTGGTATCTATTAATAAGGGC.......................................................................................................................................................3011.001.00-----------------------1.00-------------
............................................................................................................CAGCAGCATGCAAATAGTG.............................................................................................................................................................................................................................................................191.000.001.00------------------------------------
............................................................................................................CAGCAGCATGCAAATATCA.............................................................................................................................................................................................................................................................191.000.001.00------------------------------------
............................................................................................................CAGCAGCATGCAAATGTCG.............................................................................................................................................................................................................................................................191.000.001.00------------------------------------
..........................................GAGGGCGGGTGAGGATTT................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------1.00-------------------
......................................................................................................................................GTTCGCAGCAGAACTCTG....................................................................................................................................................................................................................................181.000.00-------------1.00-----------------------
..............................AGAAGAGCAGCGGAGGGCGGGC........................................................................................................................................................................................................................................................................................................................................221.000.00--1.00----------------------------------
...AGGAGGAAAGCAAGAGGACAGACCT................................................................................................................................................................................................................................................................................................................................................................2511.001.00--------1.00----------------------------
......................................AGCGGAGGGCGGGTGTCTG...................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------1.00------
............................................................................................................................................................................................................................................................................................ATAGGATCTTGCTGCATTGCCCTGGCCAG...................................................................291.000.00--1.00----------------------------------
................................................................................................AATAAAACCATGCAGCAGCTT.......................................................................................................................................................................................................................................................................211.000.00------------------1.00------------------
.....................CAGACCTCCAGAAGAGCAGCGGAGGGCGGG.........................................................................................................................................................................................................................................................................................................................................3011.001.00------1.00------------------------------
........................................................................GTGTGTGTTCATCTACCCATG...............................................................................................................................................................................................................................................................................................2111.001.00------1.00------------------------------
..........................................................................................ATGAGGAATAAAACCATGCAGCAG..........................................................................................................................................................................................................................................................................2411.001.00---1.00---------------------------------
.......................................................................................CCCATGAGGAATAAAACCAT.................................................................................................................................................................................................................................................................................2011.001.00-----1.00-------------------------------
...................GACAGACCTCCAGAAGAGCAGCGGAGGG.............................................................................................................................................................................................................................................................................................................................................2811.001.00--------------1.00----------------------
............................................................................................................CAGCAGCATGCAAATATGG.............................................................................................................................................................................................................................................................191.000.001.00------------------------------------
............................................................................................................CAGCAGCATGCAAATACAG.............................................................................................................................................................................................................................................................191.000.001.00------------------------------------
......................................................................CAGTGTGTGTTCATCTACCCATGAGGAAT.........................................................................................................................................................................................................................................................................................2911.001.00-------------------1.00-----------------
............................................................................................................CAGCAGCATGCAAATTCCT.............................................................................................................................................................................................................................................................191.000.00---------------------------1.00---------
............................................................................................................CAGCAGCATGCAAATATTA.............................................................................................................................................................................................................................................................191.000.001.00------------------------------------
.....................................CAGCGGAGGGCGGGTGAGG....................................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------------1.00-----
.....................................CAGCGGAGGGCGGGTGAGGATTTCCCCAC..........................................................................................................................................................................................................................................................................................................................291.000.00--1.00----------------------------------
..............................................................................................................................................................................TCATACAGTGGGTTGTCAATATGTTTAATAAT..............................................................................................................................................................................3211.001.00---------------------1.00---------------
.........................CCTCCAGAAGAGCAGCGGAGGGC............................................................................................................................................................................................................................................................................................................................................2311.001.00-----------1.00-------------------------
............................................................................................................CAGCAGCATGCAAATATT..............................................................................................................................................................................................................................................................181.000.00-1.00-----------------------------------
...........................................................................................TGAGGAATAAAACCATGCAGCA...........................................................................................................................................................................................................................................................................2211.001.00------------1.00------------------------
............................................................................................................CAGCAGCATGCAAATTCTG.............................................................................................................................................................................................................................................................191.000.001.00------------------------------------
.......................................................................AGTGTGTGTTCATCTACCCATGAGA............................................................................................................................................................................................................................................................................................251.000.00----------------------------1.00--------
............................................................................................................CAGCAGCATGCAAATGGGTT............................................................................................................................................................................................................................................................201.000.00--------------------------------1.00----
.....................................................................................................................................................................................................................................................GGATTATTTGGCTATTAAAAAAA................................................................................................................231.000.00-----------------------------1.00-------
............................................................................................................CAGCAGCATGCAAATACCG.............................................................................................................................................................................................................................................................191.000.001.00------------------------------------
........................................................................GTGTGTGTTCATCTACCCATGAGGAATA........................................................................................................................................................................................................................................................................................2811.001.00---------------1.00---------------------
......................................................................................................................................................................................................TTAATAATTGTTGGTATCTATTA...............................................................................................................................................................2311.001.00-1.00-----------------------------------
...........................................................................................................................................................................................................................TAATAAGGGCAATATATT...............................................................................................................................................1820.500.50--------0.50----------------------------
......................................................................................................................................................................................................................................................................AAATGGAATGAAGTTATTTTTA................................................................................................2220.500.50---------------------------------0.50---
.........................................GGAGGGCGGGTGAGGA...................................................................................................................................................................................................................................................................................................................................1630.330.33----------------------------------0.33--

Antisense strand
CAGAGGAGGAAAGCAAGAGGACAGACCTCCAGAAGAGCAGCGGAGGGCGGGTGAGGATTTCCCCATATACCAGTGTGTGTTCATCTACCCATGAGGAATAAAACCATGCAGCAGCATGCAAATGGTGTCCTGGTGTTCGCAGCAGAACTGCTCATGGTAATGGATAAGTTGTTTTCATACAGTGGGTTGTCAATATGTTTAATAATTGTTGGTATCTATTAATAAGGGCAATATATTCATATGGTGGATTATTTGGCTATTAAAATGGAATGAAGTTATTTTTAATAGGATCTTGCTGCATTGCCCTGGCTAGAGTGTGACTATTCACAGGTGCAGTTACTGCTCGCTGCAGCCTTGAACTGGCCTCAAGTGATCCTTCC
..................................................((((((((.....((((((....))))))...))))...(((.((((.....((((((((......))))..)))).)))).))).))))................................................................................................................................................................................................................................................
..................................................51.................................................................................................150....................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189785SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343334SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................TCCTCATGGGTAGATGAACAC........................................................................................................................................................................................................................................................................................... 2111.001.00----------1.00--------------------------
.....................................................................................................................................................................................................................................................................................................................................................GCTCGCTGCAGCCTTGAGGGA.................. 211.000.00--1.00----------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................GAAGGATCACTTGAGGCCAG. 2001.001.00----------------------1.00--------------
..........................................................................TGGGTAGATGAACACAC................................................................................................................................................................................................................................................................................................. 1711.001.00----------------1.00--------------------
....................................................................................................................................................................................................................................................................................................................................................GTTCAAGGCTGCAGCGAGCA.................... 2030.330.33-----------------------------------0.33-
....................ACAGACCTCCAGAAGAGTAA.................................................................................................................................................................................................................................................................................................................................................... 200.200.00------0.20------------------------------
....................TCTTCTGGAGGTCTGT........................................................................................................................................................................................................................................................................................................................................................ 1650.200.20------------------------------------0.20