ID: uc001lpc.2_intron_7_0_chr11_400706_f.3p
GENE: (8)
chr11:402878-403127+


(4)
AGO2.ip
(1)
BRAIN
(9)
BREAST
(6)
CELL-LINE
(16)
CERVIX
(1)
HEART
(1)
HELA
(1)
LIVER
(2)
OTHER
(37)
SKIN
(1)
XRN.ip

Sense strand
CGCTCACCCCGGACCCCGCTCACCCCCGCCCCGCTCACCCCGGACCCCGCTCACCCCCGACCCCCGGCCCCGCTCACCCCCGCCCCGCTCACCCCGGACCCCGCTCACCCCCGCCCCACTCACACCCGACCCGCTCACCCCGACCCGCTCACCCCGACCCGCTCACCCCGACCCCGCCGACTCCTCCCCGCCCTGCGCAGCTGCCCCTCGCCGCCGATGCGCTCACCTTCGCGGAGGTGTCCAAGGACCC
.........................................................((....((((....((.............)).....)))).....((........))............))..........................................................................................................................
..................................................51.................................................................................134..................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
GSM532876(GSM532876)
G547T. (cervix)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR040032(GSM532917)
G603N. (cervix)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR040016(GSM532901)
G645N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577743(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040009(GSM532894)
G727T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR040024(GSM532909)
G613N. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................CCGACCCCCGGCCCCGCG................................................................................................................................................................................1820.000.002.003.00--1.00--1.00--1.00--1.001.00----1.00-1.00---------1.00-----------------1.00---------------1.00--1.001.001.00-1.001.00
........................................................CCGACCCCCGGCCCCGCGTC..............................................................................................................................................................................2018.000.00-1.001.00---1.00------1.00----2.00--1.00------1.001.00--1.00-1.00--1.00----------1.00-1.00-1.001.00-----1.00-------1.00------
........................................................CCGACCCCCGGCCCCGCGTCC.............................................................................................................................................................................2114.000.00-1.00----2.00-----2.00---1.00-----1.00---1.00--------1.00---1.00-1.00------------1.00-----1.00-----1.00-------
........................................................CCGACCCCCGGCCCCGCGT...............................................................................................................................................................................194.000.00------------1.00--------------------------------------1.00------------1.00------1.00--
.....................................CCCCGGACCCCGCTCACCCCCGGCCC...........................................................................................................................................................................................263.000.003.00-------------------------------------------------------------------------
.......................................................CCCGACCCCCGGCCCCGCG................................................................................................................................................................................193.000.00-------------------1.00------------------1.00-1.00---------------------------------
...................................................................CCCCGCTCACCCCCGCCGCG...................................................................................................................................................................203.000.00---------3.00----------------------------------------------------------------
............................................................CCCCCGGCCCCGCTCGCC............................................................................................................................................................................182.000.00----------------------------------------------1.00----------------1.00----------
...........................................................................ACCCCCGCCCCGCTCCGGC............................................................................................................................................................192.000.00-----------------------2.00--------------------------------------------------
..................................................................................................................................................................................................................................CTTCGCGGAGGTGTCCAAGGA...2111.001.00------------------------------------------1.00-------------------------------
........................................................CCGACCCCCGGCCCCGCTCCC.............................................................................................................................................................................211.000.00------------------------------------1.00-------------------------------------
...........................................................................................................................................................................................................................CGCTCACCTTCGCGG................1511.001.00--------------------------------------------------------1.00-----------------
........................................................CCGACCCCCGGCCCCCCG................................................................................................................................................................................181.000.00----------1.00---------------------------------------------------------------
............................................................CCCCCGGCCCCGCTCCTC............................................................................................................................................................................181.000.00-------------1.00------------------------------------------------------------
.............................................................CCCCGGCCCCGCTCACTCCC.........................................................................................................................................................................201.000.00------------------------------1.00-------------------------------------------
........................................................CCGACCCCCGGCCCCGCCTC..............................................................................................................................................................................201.000.00----1.00---------------------------------------------------------------------
........................................................CCGACCCCCGGCCCCGCGAC..............................................................................................................................................................................201.000.00----------1.00---------------------------------------------------------------
......................................................................................................................CTCACACCCGACCCGGGG..................................................................................................................181.000.00-------------------------1.00------------------------------------------------
.................................................................................................................................................................................CGACTCCTCCCCGCCCTGCGCAG..................................................2311.001.00-----------------------------------------------1.00--------------------------
....................................................................................................................................................................................................GCAGCTGCCCCTCGCAAA....................................181.000.00--------------------1.00-----------------------------------------------------
.................................................CTCACCCCCGACCCCCCGCC.....................................................................................................................................................................................201.000.00----------------------------------------------------------1.00---------------
........................................................................................................................................................................................TCCCCGCCCTGCGCAGCTGC..............................................2011.001.00---------------------------------1.00----------------------------------------
........................................................CCGACCCCCGGCCCCGCA................................................................................................................................................................................181.000.00--------------------------------------------1.00-----------------------------
...........................................................................................................CCCCCGCCCCACTCACACCCGACC.......................................................................................................................2411.001.00-------------------------------------------1.00------------------------------
........................................................CCGACCCCCGGCCCCGCTTCC.............................................................................................................................................................................211.000.00----------------1.00---------------------------------------------------------
........................................................CCGACCCCCGGCCCCGAGTC..............................................................................................................................................................................201.000.00----1.00---------------------------------------------------------------------
..............................................................................CCCGCCCCGCTCACCCCGGACCC.....................................................................................................................................................2350.400.40--------------0.40-----------------------------------------------------------

Antisense strand
CGCTCACCCCGGACCCCGCTCACCCCCGCCCCGCTCACCCCGGACCCCGCTCACCCCCGACCCCCGGCCCCGCTCACCCCCGCCCCGCTCACCCCGGACCCCGCTCACCCCCGCCCCACTCACACCCGACCCGCTCACCCCGACCCGCTCACCCCGACCCGCTCACCCCGACCCCGCCGACTCCTCCCCGCCCTGCGCAGCTGCCCCTCGCCGCCGATGCGCTCACCTTCGCGGAGGTGTCCAAGGACCC
.........................................................((....((((....((.............)).....)))).....((........))............))..........................................................................................................................
..................................................51.................................................................................134..................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
GSM532876(GSM532876)
G547T. (cervix)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR040032(GSM532917)
G603N. (cervix)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR040016(GSM532901)
G645N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577743(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040009(GSM532894)
G727T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR040024(GSM532909)
G613N. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
..............CCCGCTCACCCCCGCCG........................................................................................................................................................................................................................... 173.000.00-----------3.00--------------------------------------------------------------
......................................CCCGGACCCCGCTCACACC................................................................................................................................................................................................. 193.000.00---3.00----------------------------------------------------------------------
..............................................................CCCGGCCCCGCTCACAGA.......................................................................................................................................................................... 183.000.00--------3.00-----------------------------------------------------------------
...................................................................................................CCCGCTCACCCCCGCC....................................................................................................................................... 163.000.00--3.00-----------------------------------------------------------------------
................................................................................................................................................CCGCTCACCCCGACCCGCGGA..................................................................................... 212.000.00-------2.00------------------------------------------------------------------
.........................................................................................................................................CCCCGACCCGCTCACCCCTA............................................................................................. 202.000.00-----------------2.00--------------------------------------------------------
.........................................................................................................................................CCCCGACCCGCTCACCCCG.............................................................................................. 192.000.00---------------2.00----------------------------------------------------------
.....................................................CCCCCGACCCCCGGCCC.................................................................................................................................................................................... 172.000.00-----2.00--------------------------------------------------------------------
.....................................................CCCCCGACCCCCGGCCCAG.................................................................................................................................................................................. 191.000.00----------------------1.00---------------------------------------------------
.......................................................CCCGACCCCCGGCCCTGAT................................................................................................................................................................................ 191.000.00-----1.00--------------------------------------------------------------------
...........................................................................................................................................................................CCCCGCCGACTCCTCCGG............................................................. 181.000.00------------------------1.00-------------------------------------------------
.....................................................GGGGCCGGGGGTCGGGGG................................................................................................................................................................................... 1801.001.00---------------------------------------------------------1.00----------------
.................................................................GGCCCCGCTCACCCCCGCCAG.................................................................................................................................................................... 211.000.00---------------------------1.00----------------------------------------------
...............................................................................................................................................................................CAGGGCGGGGAGGAGTCGGC....................................................... 2011.001.00--------------1.00-----------------------------------------------------------
............................................................................................................................................................................CCCGCCGACTCCTCCAGTC........................................................... 191.000.00--------------------------------------------------------------1.00-----------
............................................................................................................................................................................CCCGCCGACTCCTCCCCC............................................................ 181.000.00---------------------------------------------1.00----------------------------
...........................................................................................................................................................................CCCCGCCGACTCCTCCGA............................................................. 181.000.00--------------------1.00-----------------------------------------------------
......................................................CCCCGACCCCCGGCCCCGCGG............................................................................................................................................................................... 211.000.00--1.00-----------------------------------------------------------------------
................................................................................................................................................................................................................CGCCGCCGATGCGCTCC......................... 171.000.00---1.00----------------------------------------------------------------------
.........................................................................................................CACCCCCGCCCCACTCTAG.............................................................................................................................. 191.000.00-------------------------------------------------------------1.00------------
.............................................CCCGCTCACCCCCGACG............................................................................................................................................................................................ 171.000.00-------------------------------------------------------1.00------------------