ID: uc001lob.2_intron_0_0_chr11_197047_f
GENE: (1)
chr11:196997-197346+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(2)
BRAIN 		(7)
BREAST 		(12)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
LIVER 		(2)
OTHER 		(7)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
CTCCAAGTAGGAGAAACCGGCCCAGGGCTCCCTTAGAGCCGAGAACAGTGGTGAGTTAAGGGCCAGCATGGACAGCAACTCTGGGTTACAGTTAAGCTGGTGAGGAGCTCACAGACCCATGCAGAAAGCTCCTACTGTCCCTGACTCCTGGCTCCCAGCTGGAGATCCCCACTGATGCTGCAGCAGGTTCCGCAGGTCTTACCCTTCAGTGTCAGCAAGAGCAGGGTCGGGGACATCAGGGGCCGGCATGGGACAGGGCCGGGCCTCCCAGCACCTGGTAACCCTCTCACTTACGGACAGAGCTGGCCATGACGGAGGAGGTATGGATGGGTACCTGGAGGCCCCATCGC
................................................................................................(((...(((((((..((......)).....)))))))..((((((((((.(((.((((......((....))...(((((((((.((..(((.((...))....))))).)))))))))...))))))))))))))))).)))...............................................................................................................
................................................................................................97.............................................................................................................................................240............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040036(GSM532921)
G243N. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040034(GSM532919)
G001N. (cervix)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................................................GAGGAGCTCACAGACTAGT......................................................................................................................................................................................................................................1928.000.003.00-7.003.001.002.002.00----1.001.001.001.00----1.00---1.00--1.00--1.00------1.00-1.00---
.....................................................................................................GAGGAGCTCACAGACTAG.......................................................................................................................................................................................................................................1811.000.008.00-----1.00-1.00-----------------------1.00---------
.........................................................................................................................................................................................................................AGAGCAGGGTCGGGGCGGC..................................................................................................................197.000.00-5.00------------------1.00---1.00-----------------
.........................................................................................................................................................................................................................AGAGCAGGGTCGGGGCGG...................................................................................................................187.000.00-7.00----------------------------------------
.....................................................................................................GAGGAGCTCACAGACTAGA......................................................................................................................................................................................................................................193.000.00---1.00---------1.00--------1.00-------------------
.........................................................................................................................................................................................................................AGAGCAGGGTCGGGGCG....................................................................................................................172.000.00-2.00----------------------------------------
.....................................................................................................GAGGAGCTCACAGACTATT......................................................................................................................................................................................................................................192.000.00-----------1.00----1.00-------------------------
.....................................................................................................GAGGAGCTCACAGACTCG.......................................................................................................................................................................................................................................182.000.001.00----1.00------------------------------------
.....................................................................................................GAGGAGCTCACAGACCAGTA.....................................................................................................................................................................................................................................202.000.00----1.00-------1.00-----------------------------
.....................................................................................................GAGGAGCTCACAGACTAGC......................................................................................................................................................................................................................................192.000.00--1.00---------------------------1.00-----------
.....................................................................................................GAGGAGCTCACAGACCAG.......................................................................................................................................................................................................................................182.000.002.00-----------------------------------------
.....................................................................................................GAGGAGCTCACAGACTTGT......................................................................................................................................................................................................................................191.000.00----------------------------1.00-------------
......................................................................................................................................................................................................................................................................................................................GACGGAGGAGGTATGGATGGGTAC................2411.001.00-------------------------------------1.00----
.....................................................................................................GAGGAGCTCACAGACAAGG......................................................................................................................................................................................................................................191.000.00--1.00---------------------------------------
.....................................................................................................GAGGAGCTCACAGACTCGG......................................................................................................................................................................................................................................191.000.00---------------------1.00--------------------
.....................................................................................................GAGGAGCTCACAGACTAT.......................................................................................................................................................................................................................................181.000.001.00-----------------------------------------
.....................................................................................................GAGGAGCTCACAGACTCGT......................................................................................................................................................................................................................................191.000.00-------------------------1.00----------------
...........................................................................................................................................CCTGACTCCTGGCTCCATC................................................................................................................................................................................................191.000.00-----------------------------------------1.00
...............................................................................................................................................................................TGCTGCAGCAGGTTCGTTA............................................................................................................................................................191.000.00--------1.00---------------------------------
...................................................................................................GTGAGGAGCTCACAGACAGG.......................................................................................................................................................................................................................................201.000.00---------1.00--------------------------------
...................................................................................................GTGAGGAGCTCACAGTAT.........................................................................................................................................................................................................................................181.000.00---------1.00--------------------------------
...................................................................................................GTGAGGAGCTCACAGACTAG.......................................................................................................................................................................................................................................201.000.001.00-----------------------------------------
.....................................................................................................GAGGAGCTCACAGACTTG.......................................................................................................................................................................................................................................181.000.00----1.00-------------------------------------
.....................................................................................................GAGGAGCTCACAGACAAAA......................................................................................................................................................................................................................................191.000.00------------------1.00-----------------------
.................................................................................................................................................................GAGATCCCCACTGATTGC...........................................................................................................................................................................181.000.00---------------1.00--------------------------
.....................................................................................................GAGGAGCTCACAGACTCCC......................................................................................................................................................................................................................................191.000.00--1.00---------------------------------------
.....................................................................................................GAGGAGCTCACAGACTAAT......................................................................................................................................................................................................................................191.000.00-----------------1.00------------------------

Antisense strand
CTCCAAGTAGGAGAAACCGGCCCAGGGCTCCCTTAGAGCCGAGAACAGTGGTGAGTTAAGGGCCAGCATGGACAGCAACTCTGGGTTACAGTTAAGCTGGTGAGGAGCTCACAGACCCATGCAGAAAGCTCCTACTGTCCCTGACTCCTGGCTCCCAGCTGGAGATCCCCACTGATGCTGCAGCAGGTTCCGCAGGTCTTACCCTTCAGTGTCAGCAAGAGCAGGGTCGGGGACATCAGGGGCCGGCATGGGACAGGGCCGGGCCTCCCAGCACCTGGTAACCCTCTCACTTACGGACAGAGCTGGCCATGACGGAGGAGGTATGGATGGGTACCTGGAGGCCCCATCGC
................................................................................................(((...(((((((..((......)).....)))))))..((((((((((.(((.((((......((....))...(((((((((.((..(((.((...))....))))).)))))))))...))))))))))))))))).)))...............................................................................................................
................................................................................................97.............................................................................................................................................240............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040036(GSM532921)
G243N. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040034(GSM532919)
G001N. (cervix)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................................................................................................................................................CTTGCTGACACTGAAGGGTAAGACCTGC................................................................................................................................... 2811.001.00-------1.00----------------------------------
...........................................................................................................TCTGCATGGGTCTGTGAG................................................................................................................................................................................................................................. 1821.001.00---------------------------------1.00--------
..............................................................................................................................................................................................................................................GGGGCCGGCATGGGAGGC.............................................................................................. 181.000.00-----------------------------------1.00------
.....................................TAACTCACCACTGTTCTCGGC.................................................................................................................................................................................................................................................................................................... 2111.001.00-------1.00----------------------------------
........................................................................................................GAGCTCACAGACCCATTG.................................................................................................................................................................................................................................... 181.000.00----------------------------------------1.00-
......................................................................................................................................................................................................................................................................GCCTCCCAGCACCTGGTAAT.................................................................... 201.000.00---------------------------1.00--------------
................................CCACTGTTCTCGGCTCTAA........................................................................................................................................................................................................................................................................................................... 1911.001.00--------------1.00---------------------------
..........................................................AGGGCCAGCATGGACAG................................................................................................................................................................................................................................................................................... 171.000.00-------------------------------1.00----------
......................................................................................................................................AGCCAGGAGTCAGGGACAG..................................................................................................................................................................................................... 1911.001.00----------------------------------1.00-------
..............GCTCTAAGGGAGCCCTGGGCCGGTT....................................................................................................................................................................................................................................................................................................................... 2511.001.00----------1.00-------------------------------
....................................................................................................CATGGGTCTGTGAGCTCCTCA..................................................................................................................................................................................................................................... 2111.001.00---------------------------------------1.00--
...............................................................................................................................AGTCAGGGACAGTAGGAGC............................................................................................................................................................................................................ 1911.001.00----------1.00-------------------------------