ID: uc001lnn.2_intron_11_0_chr10_135373658_r.3p
GENE: SYCE1(2)
chr10:135373608-135373857-


(1)
B-CELL
(1)
BRAIN
(4)
BREAST
(7)
CELL-LINE
(1)
HEART
(1)
LIVER
(1)
OTHER
(2)
SKIN
(1)
TESTES

Sense strand
GAGGATATCTGGTATAATTTTACCTTATAGGGAAAAGCTGACCATGGAGGAGCCCGATTCATCTAGTGTACTGTCCACCTCAGGACAAGAAGAAGGGGCACCACTCTGGCTGGAGACCTGCCCTCAGCCTGCCTCAGTCTCAGCCCAGGGGTGGCCTCTCGCCCTGCTTGATTCTGAAATGTTTGGTTTTGTCTCCACAGGGCAGGACACGTCCTCACAGAAAATTGAAGACTTGATGGAAATGGTGCAA
............................................................................(((((.((...(((....((((((.......((((.(((.......)))))))))))))..)))...))..)))))..................................................................................................
...........................................................................76..........................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR343335SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR189784SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
................................................................................CAGGACAAGAAGAAGTATC.......................................................................................................................................................1980.000.0080.00---------------------
................................................................................CAGGACAAGAAGAAGTT.........................................................................................................................................................1723.000.00--21.00--1.00-----1.00----------
................................................................................CAGGACAAGAAGAAGTTA........................................................................................................................................................1822.000.00-15.00-3.00-1.002.00--1.00------------
................................................................................CAGGACAAGAAGAAGTTAA.......................................................................................................................................................1916.000.00-12.00-2.00---1.00-1.00------------
................................................................................CAGGACAAGAAGAAGATC........................................................................................................................................................186.000.006.00---------------------
...............AATTTTACCTTATAGGCTAT.......................................................................................................................................................................................................................202.000.00--------2.00-------------
..................................................................................................................................GCCTCAGTCTCAGCCGTA......................................................................................................181.000.00------------1.00---------
.................................................................................................................AGACCTGCCCTCAGCCTGCCT....................................................................................................................2111.001.00--------------------1.00-
..................................................................................GGACAAGAAGAAGGGGCT......................................................................................................................................................181.000.00----1.00-----------------
..................................AAGCTGACCATGGAGGACAGT...................................................................................................................................................................................................211.000.00---------------1.00------
.......................................................................................................................................................................................................................CACAGAAAATTGAAGAATTC...............201.000.00------------------1.00---
.................................................................................AGGACAAGAAGAAGGATT.......................................................................................................................................................181.000.00-----------------1.00----
................................................................................CAGGACAAGAAGAAGGTAA.......................................................................................................................................................191.000.00-1.00--------------------
......................................................................................................................................................................................................................TCACAGAAAATTGAAGACTTGATGGA..........2611.001.00-------------------1.00--
....................................................................................................................................................................................................................................AGACTTGATGGAAATGGTGC..2011.001.00----1.00-----------------
..............................................................................................................................................................................................................................AATTGAAGACTTGATGGAAATG......2211.001.00---------------------1.00
................................................................................CAGGACAAGAAGAAGTTT........................................................................................................................................................181.000.00-1.00--------------------
............................................................................................................................................................................................................................AAAATTGAAGACTTGATGG...........1911.001.00----1.00-----------------
...............................................................................TCAGGACAAGAAGAAGT..........................................................................................................................................................171.000.00-------1.00--------------

Antisense strand
GAGGATATCTGGTATAATTTTACCTTATAGGGAAAAGCTGACCATGGAGGAGCCCGATTCATCTAGTGTACTGTCCACCTCAGGACAAGAAGAAGGGGCACCACTCTGGCTGGAGACCTGCCCTCAGCCTGCCTCAGTCTCAGCCCAGGGGTGGCCTCTCGCCCTGCTTGATTCTGAAATGTTTGGTTTTGTCTCCACAGGGCAGGACACGTCCTCACAGAAAATTGAAGACTTGATGGAAATGGTGCAA
............................................................................(((((.((...(((....((((((.......((((.(((.......)))))))))))))..)))...))..)))))..................................................................................................
...........................................................................76..........................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR343335SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR189784SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
................................................................................CAGGACAAGAAGAAGGATC....................................................................................................................................................... 195.000.005.00---------------------
....ATATCTGGTATAATTTATG................................................................................................................................................................................................................................... 191.000.00----------1.00-----------
........................................................................................................................................................................TGATTCTGAAATGTTCCTA............................................................... 191.000.00-------------1.00--------
..................................................................................................................................CCCCTGGGCTGAGACTGAGGC................................................................................................... 2111.001.00--------------1.00-------
......................................................................................................................................GGGCGAGAGGCCACCCCTGGGCTGAGACTG...................................................................................... 3011.001.00----------------1.00-----