ID: uc001llz.1_intron_10_0_chr10_135010640_f.3p
GENE: KNDC1(11)
chr10:135010979-135011228+


(1)
AGO2.ip
(5)
BRAIN
(4)
BREAST
(5)
CELL-LINE
(7)
CERVIX
(1)
HEART
(4)
LIVER
(1)
OTHER
(8)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
CTTGGGAGGCAAAGGAGCCCCAACGGCTCCCTCTCCAGGCAGAGCCGCTGCAGAGCTTGGGCCGTGTGGCCGCCATGCCCGGCTCCTCCCCAGCAGGAAGCTCCACGGCACCGGCGGGTGGTGGGGGACGCCCTGTGGGTGTTGCCGGCGCTGGCGGAGCTCCGTGGTCACCTGGCCCAGGGCTGTCACCTCCTCCCCAGGTGTACCAGGAGGAAGAGACCATCAGCCTCCAAAACGCCTTCTCAGTGGT
............................................................................................................((((....))))((.((.(((((((...))))))).)).))....((((....)))).....................................................................................
............................................................................................................109......................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189785SRR040007(GSM532892)
G601T. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577745(Rovira)
total RNA. (breast)
SRR343337SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532876(GSM532876)
G547T. (cervix)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532886(GSM532886)
G850T. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
.................................................................................................................................................CGGCGCTGGCGGAGCGC........................................................................................17233.006.5018.5010.00-2.00----------------------0.50----0.50--0.50-0.50-0.50-
.................................................................................................................................................CGGCGCTGGCGGAGCGG........................................................................................1728.006.503.504.50--------------------------------------
.................................................................................................................................................CGGCGCTGGCGGAGC..........................................................................................1526.506.500.501.00---1.00-1.00--1.00-----------------0.50----0.50-0.50-0.50--
.................................................................................................................................................CGGCGCTGGCGGAGCG.........................................................................................1626.006.502.503.00-------------------------0.50------------
............................................................................................................................................................................................................ACCAGGAGGAAGAGAGGTA...........................192.000.00------------------1.00---1.00-----------------
............................................................................................................................................................................................................ACCAGGAGGAAGAGAGGT............................182.000.00--------1.00------------1.00------------------
.................................................................................................................................................CGGCGCTGGCGGAGCGCT.......................................................................................1821.506.50-------------------------0.50----0.50--------0.50
.......................................................................................................................................................................................................GGTGTACCAGGAGGAAGAGACCA............................2311.001.00--------------1.00-------------------------
.................................................................................................................GCGGGTGGTGGGGGAGAGG......................................................................................................................191.000.00-------------------1.00--------------------
...........................................................................................................................GGGGACGCCCTGTGGGCGG............................................................................................................191.000.00-----------------------1.00----------------
.................................................................................................................................................CGGCGCTGGCGGAGCGA........................................................................................1721.006.500.500.50--------------------------------------
..................................................................................................................................................................................................CCCCAGGTGTACCAGCACT.....................................191.000.00------------1.00---------------------------
................................................................................................................................................CCGGCGCTGGCGGAGCGC........................................................................................181.000.001.00---------------------------------------
..............................................................................................................................................................................................................CAGGAGGAAGAGACCGAG..........................181.000.00---------1.00------------------------------
...............................................................................................................................................................................................................AGGAGGAAGAGACCATC..........................1711.001.00------1.00---------------------------------
.................................................................................................................GCGGGTGGTGGGGGAGTC.......................................................................................................................181.000.00-----------------1.00----------------------
.....................................................................................CTCCCCAGCAGGAAGCTGCGG................................................................................................................................................211.000.00----------------1.00-----------------------
..................................................................................................................CGGGTGGTGGGGGACGCTTGC...................................................................................................................211.000.00------------------------1.00---------------
...............................................................................................................CGGCGGGTGGTGGGGTGGG........................................................................................................................191.000.00-------------1.00--------------------------
.................................................................................................................................................CGGCGCTGGCGGAGCTC........................................................................................1711.001.001.00---------------------------------------
.................................................................................................................................................CGGCGCTGGCGGAGCGCTG......................................................................................1920.506.50--------------------------------0.50-------
.................................................................................................................................................CGGCGCTGGCGGAGCGGC.......................................................................................1820.506.50-----------------------------0.50----------

Antisense strand
CTTGGGAGGCAAAGGAGCCCCAACGGCTCCCTCTCCAGGCAGAGCCGCTGCAGAGCTTGGGCCGTGTGGCCGCCATGCCCGGCTCCTCCCCAGCAGGAAGCTCCACGGCACCGGCGGGTGGTGGGGGACGCCCTGTGGGTGTTGCCGGCGCTGGCGGAGCTCCGTGGTCACCTGGCCCAGGGCTGTCACCTCCTCCCCAGGTGTACCAGGAGGAAGAGACCATCAGCCTCCAAAACGCCTTCTCAGTGGT
............................................................................................................((((....))))((.((.(((((((...))))))).)).))....((((....)))).....................................................................................
............................................................................................................109......................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189785SRR040007(GSM532892)
G601T. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577745(Rovira)
total RNA. (breast)
SRR343337SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532876(GSM532876)
G547T. (cervix)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532886(GSM532886)
G850T. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
.......................CGGCTCCCTCTCCAGGAGA................................................................................................................................................................................................................ 191.000.00-----------1.00----------------------------
...............................................................GTGTGGCCGCCATGCAGC......................................................................................................................................................................... 181.000.00--------------------1.00-------------------
...............................................................................................................CGGCGGGTGGTGGGGTCCG........................................................................................................................ 191.000.00--1.00-------------------------------------
..............GAGCCCCAACGGCTCCAGGC........................................................................................................................................................................................................................ 201.000.00--1.00-------------------------------------
..............................................................................................................................................TGCCGGCGCTGGCGGCATC......................................................................................... 191.000.00----1.00-----------------------------------
..........................................................................ATGCCCGGCTCCTCCCCTTAG........................................................................................................................................................... 211.000.00---------------1.00------------------------