| (1) AGO1.ip | (1) AGO2.ip | (1) BRAIN | (6) BREAST | (5) CELL-LINE | (3) CERVIX | (1) HELA | (1) LIVER | (6) OTHER | (1) RRP40.ip | (4) SKIN | (1) XRN.ip |
| ACAGGAGCCAGCACGTCGTGTCTCAAGATCTAGCTTCTCTTCTGACCCTGGTGAGTAGTGGTTGGGTTTTGTTCCAGAATCCTGAAAGATCAGGTCTTTGCGAAGCATATTGGCAAAGAAGGGGCAACAAGAATGCAAGTGCTAAATGTCTAGCCTGTCAGAAATGGAGGAGGTGTCATTTAACATGTCAACGACAGACAGATGCCTAACTTTCCCTTGGTGACTGATGGTATGCTATGCTTAGGAGAGACTCTAGATATGAGAAAATTGCCTGTTCAGCTGTCAACTCAGTTCTCAGTAGTTAGATAGCATGTGCTATTTCATACTGGTTATTGGAGCTGATATGATTTATATATTTGTATCATAATACTAGTATCATAAGACTTGCAAGTTTTAGGCATTAAATAATTTGTAGGCCAAGTAAAAGCTAGCTTATAAGACAACCTGAAACAATTAAAATATTGAATTCCACAAATGTTAATCATTGAGAAAATGCTGAACTTCTGTTTCTTATTTCATAATTCATTGCCAAGATGAGAAAGCTCAAGATTCCAAGGCCTATTCAAAAATCACTGAAGGAAAA ..................................................................................................................................................................................................................................................................................................................................................................................................................................................((((((.(((..((..((((......))))............(((...((((.....))))...))).)).)))))))))..................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................434................................................................................................533................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189782 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR189783 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR343334 | SRR040018(GSM532903) G701N. (cervix) | SRR040010(GSM532895) G529N. (cervix) | SRR189787 | SRR189785 | SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin) | RoviraIPAgo2(Rovira) total RNA. (ago2 breast) | SRR191614(GSM715724) 92genomic small RNA (size selected RNA from t. (breast) | SRR037936(GSM510474) 293cand1. (cell line) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR207113(GSM721075) IP against AGO 1 & 2. (ago1/2 cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | TAX577740(Rovira) total RNA. (breast) | SRR330909(SRX091747) tissue: normal skindisease state: normal. (skin) | TAX577739(Rovira) total RNA. (breast) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330870(SRX091708) tissue: skin psoriatic involveddisease state:. (skin) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR040024(GSM532909) G613N. (cervix) | TAX577743(Rovira) total RNA. (breast) | TAX577738(Rovira) total RNA. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGATAAG................................................................................................................................... | 20 | 41.00 | 0.00 | 33.00 | - | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGAGAAG................................................................................................................................... | 20 | 5.00 | 0.00 | 4.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGAAAAGTG................................................................................................................................. | 22 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................ATGCTTAGGAGAGACTCTAGA...................................................................................................................................................................................................................................................................................................................................... | 21 | 1 | 3.00 | 3.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................TGATATGATTTATATATTAG................................................................................................................................................................................................................................ | 20 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......CCAGCACGTCGTGTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGATA..................................................................................................................................... | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGACAAG................................................................................................................................... | 20 | 2.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGTAAG.................................................................................................................................... | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGAAACG................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGAAAATG.................................................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGAAAATTG................................................................................................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........CACGTCGTGTCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATAAGACAACCTGATAAG................................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AGGAGGTGTCATTTATAG.............................................................................................................................................................................................................................................................................................................................................................................................................. | 18 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........AGCACGTCGTGTCTCAAGACCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................AGTGGTTGGGTTTTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGAAAAGAC................................................................................................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGATATG................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................ATTAAATAATTTGTAGACAT.................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................AATGTCTAGCCTGTCAGAAATGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................GACAGACAGATGCCTAACT.................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTCAAGATTCCGGGT.......................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....AGCCAGCACGTCGTGTCTCAAGATCCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGCTAT.................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGATGAG................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGAAAAATG................................................................................................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....AGCCAGCACGTCGTGTCTCAAGATCTAGCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGATAT.................................................................................................................................... | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............ACGTCGTGTCTCAAGATCTAGCTTCTCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGATAA.................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................AAATGGAGGAGGTGTTA..................................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGTTGC.................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................................GTTCTCAGTAGTTAGATAGCAT............................................................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGACAA.................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...............................AGCTTCTCTTCTGACCCTGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGATCTA................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................................................................................................................................................TGATATGATTTATATATTAC................................................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGAGCAT................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGAA...................................................................................................................................... | 17 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAAGACAACCTGAAGTT................................................................................................................................... | 20 | 3 | 0.33 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ACAGGAGCCAGCACGTCGTGTCTCAAGATCTAGCTTCTCTTCTGACCCTGGTGAGTAGTGGTTGGGTTTTGTTCCAGAATCCTGAAAGATCAGGTCTTTGCGAAGCATATTGGCAAAGAAGGGGCAACAAGAATGCAAGTGCTAAATGTCTAGCCTGTCAGAAATGGAGGAGGTGTCATTTAACATGTCAACGACAGACAGATGCCTAACTTTCCCTTGGTGACTGATGGTATGCTATGCTTAGGAGAGACTCTAGATATGAGAAAATTGCCTGTTCAGCTGTCAACTCAGTTCTCAGTAGTTAGATAGCATGTGCTATTTCATACTGGTTATTGGAGCTGATATGATTTATATATTTGTATCATAATACTAGTATCATAAGACTTGCAAGTTTTAGGCATTAAATAATTTGTAGGCCAAGTAAAAGCTAGCTTATAAGACAACCTGAAACAATTAAAATATTGAATTCCACAAATGTTAATCATTGAGAAAATGCTGAACTTCTGTTTCTTATTTCATAATTCATTGCCAAGATGAGAAAGCTCAAGATTCCAAGGCCTATTCAAAAATCACTGAAGGAAAA ..................................................................................................................................................................................................................................................................................................................................................................................................................................................((((((.(((..((..((((......))))............(((...((((.....))))...))).)).)))))))))..................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................................................434................................................................................................533................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189782 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR189783 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR343334 | SRR040018(GSM532903) G701N. (cervix) | SRR040010(GSM532895) G529N. (cervix) | SRR189787 | SRR189785 | SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin) | RoviraIPAgo2(Rovira) total RNA. (ago2 breast) | SRR191614(GSM715724) 92genomic small RNA (size selected RNA from t. (breast) | SRR037936(GSM510474) 293cand1. (cell line) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR207113(GSM721075) IP against AGO 1 & 2. (ago1/2 cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | TAX577740(Rovira) total RNA. (breast) | SRR330909(SRX091747) tissue: normal skindisease state: normal. (skin) | TAX577739(Rovira) total RNA. (breast) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330870(SRX091708) tissue: skin psoriatic involveddisease state:. (skin) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR040024(GSM532909) G613N. (cervix) | TAX577743(Rovira) total RNA. (breast) | TAX577738(Rovira) total RNA. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................................................................................CCTAAGCATAGCATACCATCAGTCA.................................................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................TTGGGTTTTGTTCCAGAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGTAAAAGCTAAAGA..................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................CTTGGTGACTGATGGCGG.............................................................................................................................................................................................................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .....................................................................................................................................TCTGACAGGCTAGACATTTAGCACTTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATCATTGAGAAAATA........................................................................................ | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |