ID: uc001ljt.2_intron_26_0_chr10_128926029_f.5p
GENE: (27)
chr10:128925979-128926228+


(2)
B-CELL
(4)
BREAST
(6)
CELL-LINE
(2)
CERVIX
(2)
HEART
(3)
LIVER
(1)
OTHER
(13)
SKIN
(1)
TESTES
(4)
UTERUS
(1)
XRN.ip

Sense strand
GGACCGTGAACCGAACCGTCATTTCCATGGGACGAGATTCTGAACTCATTGTAAGTGCTTGGTGACATATGTTTGGATATTTAACTGGGGCTGACAGCATCCTTCTCCAACTGCTGTTTGAACATAGCTTATTATACTGCAATGTAGTGAGCAGTTGAGATACAGCTTGGTATATAAAATGTCCTCATTTTCCAAATGAATGTCAAAGTTGAAGGGTAAGCAAACCAACTTTAAAGATGGAAACATTTGG
.......................................................................................((((((((((((............))))))).......)))))....(((......)))........................................................................................................
.......................................................................72.........................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM532874(GSM532874)
G699T. (cervix)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................................TAGCTTATTATACTGATGT...........................................................................................................1924.000.005.0010.002.001.001.00------------1.001.001.00---1.00----1.00------------
............................................................................................................................TAGCTTATTATACTGAT.............................................................................................................178.000.003.001.001.003.00-------------------------------------
............................................................................................................................TAGCTTATTATACTGATTT...........................................................................................................197.000.002.002.003.00--------------------------------------
............................................................................................................................TAGCTTATTATACTGTTGT...........................................................................................................193.000.00--1.00----------------------------------1.001.00--
............................................................................................................................TAGCTTATTATACTGACTT...........................................................................................................192.000.002.00----------------------------------------
............................................................................................................................TAGCTTATTATACTGATG............................................................................................................182.000.00-1.00------------------------1.00--------------
.............................................................................................................................................ATGTAGTGAGCAGTTGAGATACA......................................................................................2312.002.00---------2.00-------------------------------
..........................ATGGGACGAGATTCTGAACTC...........................................................................................................................................................................................................2112.002.00-----1.00----1.00------------------------------
........AACCGAACCGTCATTTCCATGG............................................................................................................................................................................................................................2212.002.00--------2.00--------------------------------
..................................................................................................................................................................................................AATGAATGTCAAAGTGAAG.....................................192.000.00--------------------1.00-----------1.00--------
......................TTCCATGGGACGAGATTCTGAACT............................................................................................................................................................................................................2412.002.00-----2.00-----------------------------------
............................................................................................................................TAGCTTATTATACTGACG............................................................................................................182.000.00------2.00----------------------------------
...................................GATTCTGAACTCATTGGAA....................................................................................................................................................................................................192.000.00-------------------------------1.00----1.00----
............................................................................ATATTTAACTGGGGCTGACA..........................................................................................................................................................2012.002.00----2.00------------------------------------
...........................TGGGACGAGATTCTGAAC.............................................................................................................................................................................................................1811.001.00----------------1.00------------------------
..........................................................................................................................CATAGCTTATTATACTGCA.............................................................................................................1911.001.00----------------------1.00------------------
.....................................................................TGTTTGGATATTTAACTGGGGC...............................................................................................................................................................2211.001.00-----1.00-----------------------------------
............................................................................................................................TAGCTTATTATACTGCGGT...........................................................................................................191.000.001.00----------------------------------------
.....................TTTCCATGGGACGAGATTC..................................................................................................................................................................................................................1911.001.00----------1.00------------------------------
..........CCGAACCGTCATTTCCATGGGACGGG......................................................................................................................................................................................................................261.000.00------------1.00----------------------------
...........................TGGGACGAGATTCTGAACTCAT.........................................................................................................................................................................................................2211.001.00-------------1.00---------------------------
............................................................................................................................TAGCTTATTATACTGACGT...........................................................................................................191.000.00---1.00-------------------------------------
..........................................AACTCATTGTAAGTGCTTGGTG..........................................................................................................................................................................................2211.001.00------------1.00----------------------------
........................................................................................................CTCCAACTGCTGTTTGAACATAGC..........................................................................................................................2411.001.00-----------------------------1.00-----------
..............................GACGAGATTCTGAACTCATTGGAA....................................................................................................................................................................................................241.000.00----------------------------------1.00------
.....................................................................................................................TTGAACATAGCTTATTATACTGCAA............................................................................................................2511.001.00---------------------------1.00-------------
............................................................................................................................TAGCTTATTATACTGAGTT...........................................................................................................191.000.001.00----------------------------------------
......................................................................................GGGGCTGACAGCATCCTTC.................................................................................................................................................1911.001.00---------------------1.00-------------------
............................................................................................................................TAGCTTATTATACTGCTGTT..........................................................................................................201.000.00----1.00------------------------------------
..............................................CATTGTAAGTGCTTGGTGAC........................................................................................................................................................................................2011.001.00--------------1.00--------------------------
............................................................................................................................TAGCTTATTATACTGGCGT...........................................................................................................191.000.001.00----------------------------------------
............................................................................................................................TAGCTTATTATACTGAAGT...........................................................................................................191.000.00---1.00-------------------------------------
............................................................................................................................TAGCTTATTATACTGCTTTT..........................................................................................................201.000.00--1.00--------------------------------------
...................................................................................ACTGGGGCTGACAGCATA.....................................................................................................................................................181.000.00----1.00------------------------------------
....................ATTTCCATGGGACGAGA.....................................................................................................................................................................................................................1711.001.00---------------1.00-------------------------
......................TTCCATGGGACGAGATTCTGAAC.............................................................................................................................................................................................................2311.001.00-----------1.00-----------------------------
...............................................................................................................................................................................AAAATGTCCTCATTTTACT........................................................191.000.00---------------------------------------1.00-
............................................................................................................................TAGCTTATTATACTGATGC...........................................................................................................191.000.00-1.00---------------------------------------
........................CCATGGGACGAGATTCTGAACTCATTG.......................................................................................................................................................................................................2711.001.00-----------1.00-----------------------------
................................................................................................................GCTGTTTGAACATAGC..........................................................................................................................1640.250.25-------------0.25---------------------------
.....................................................................................................CTTCTCCAACTGCTGT.....................................................................................................................................1670.140.14----------------------------------------0.14

Antisense strand
GGACCGTGAACCGAACCGTCATTTCCATGGGACGAGATTCTGAACTCATTGTAAGTGCTTGGTGACATATGTTTGGATATTTAACTGGGGCTGACAGCATCCTTCTCCAACTGCTGTTTGAACATAGCTTATTATACTGCAATGTAGTGAGCAGTTGAGATACAGCTTGGTATATAAAATGTCCTCATTTTCCAAATGAATGTCAAAGTTGAAGGGTAAGCAAACCAACTTTAAAGATGGAAACATTTGG
.......................................................................................((((((((((((............))))))).......)))))....(((......)))........................................................................................................
.......................................................................72.........................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM532874(GSM532874)
G699T. (cervix)
SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................GTGCTTGGTGACATATC................................................................................................................................................................................... 172.000.00-------------------------1.00----1.00----------
....................................................................................................CCTTCTCCAACTGCTGTT.................................................................................................................................... 182.000.00-------2.00---------------------------------
................................................................................................................................................................................AAATGTCCTCATTTTGAGT....................................................... 191.000.00------------------------1.00----------------
....................................................................................................CCTTCTCCAACTGCTGGTTC.................................................................................................................................. 201.000.00---------------------------------1.00-------