ID: uc001lif.3_intron_9_0_chr10_126822182_r.5p
GENE: (1)
chr10:126848688-126848937-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(5)
AGO2.ip
(6)
B-CELL
(3)
BRAIN
(15)
BREAST
(31)
CELL-LINE
(13)
CERVIX
(2)
HEART
(1)
HELA
(6)
LIVER
(4)
OTHER
(1)
RRP40.ip
(33)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
GCCTCCAGGGTGGGCGCCTTTCGCCGTGGACGCCGACCGTCCGGGACGAGGTAAGGGGGGCCCCGGGGGAGGGCTGGGGCCGCCGCCGCCCCCGCCTCACCTGCGGCCGCGGGCTGGGGGCGCCGCGCCCGCGCCTCACTGCGCCACTCAGGGAGGAGGAGGAGGAGGAGGAAGAGGGCGAAGGACGCGGAGCCGGCATCCGAGGACATCTTTGGTCCGTGCCCCCGGCCTCGTGTCCCCCCTCGGCGCC
.........................................................................................................................................................................((......(((.....)))....))........................................................
.....................................................................................................................................................150...............................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM532871(GSM532871)
G652N. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM339995(GSM339995)
hues6NP. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR040038(GSM532923)
G531N. (cervix)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR040015(GSM532900)
G623T. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR038863(GSM458546)
MM603. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
SRR038853(GSM458536)
MELB. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
...................................................................................................................................................................................GAAGGACGCGGAGCCGGC.....................................................1818.008.005.00------2.00-------------------------------------1.00-------------------------------------------------------------------------
..................................................................................................................................................................................CGAAGGACGCGGAGCCG.......................................................1714.004.004.00----------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................AGGAAGAGGGCGAAGGACG...............................................................1913.003.00-----------------------2.00-----------------------------------1.00-----------------------------------------------------------
..........................................................................................................................................................GGAGGAGGAGGAGGAGGAAG............................................................................2003.003.00---------2.00---------------1.00---------------------------------------------------------------------------------------------
........................................................................................................................................................................AGGAAGAGGGCGAAGGAC................................................................1812.002.00------------------------------------------------------------------1.00-----1.00----------------------------------------------
.............................ACGCCGACCGTCCGGGACG..........................................................................................................................................................................................................1912.002.00-1.00------------------------------------------------------------------------------1.00--------------------------------------
.............................ACGCCGACCGTCCGGGACGAGGGC.....................................................................................................................................................................................................242.000.00---2.00-------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................AGGGAGGAGGAGGAGGAG...................................................................................1802.002.00-------------------------1.00--------------------------1.00------------------------------------------------------------------
...........................................................................................................................................................................AAGAGGGCGAAGGACGCGGA...........................................................2012.002.00----------------------1.00---------------------------------------------1.00--------------------------------------------------
.....................................................................................................................................................AGGGAGGAGGAGGAGGATAT.................................................................................202.000.00---------------------------------------2.00-------------------------------------------------------------------------------
....................................................................................................................................................CAGGGAGGAGGAGGAGGAGGAGGAAGAGGGC.......................................................................3112.002.00--------------------------------2.00--------------------------------------------------------------------------------------
..........................................................................................................................................................GGAGGAGGAGGAGGAGGAAGA...........................................................................2102.002.00---------1.00--------------------------------------------------------------------------1.00----------------------------------
.......................................................................................................................................................................GAGGAAGAGGGCGAAGGA.................................................................1821.501.50---------------------------------------------------------------------------------------------------0.50--0.500.50---------------
......................................................GGGGGGCCCCGGGGGGG...................................................................................................................................................................................171.000.00---------------1.00-------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................GAGGAAGAGGGCGAAGGACGCC.............................................................221.000.00-----------------1.00-----------------------------------------------------------------------------------------------------
..............................................................................................................................................................................AGGGCGAAGGACGCGGAGCCGGC.....................................................2311.001.00----------------1.00------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................GGAGCCGGCATCCGAGGACATCTTTG....................................2611.001.00-------------------------------------------1.00---------------------------------------------------------------------------
...........................................................................................................................................................................AAGAGGGCGAAGGACGCGGAGCCGGCACCCG................................................311.000.00---1.00-------------------------------------------------------------------------------------------------------------------
..........TGGGCGCCTTTCGCCGTGGACGCC........................................................................................................................................................................................................................2411.001.00------------------------------------1.00----------------------------------------------------------------------------------
.........................................................................................................................................................................................CGCGGAGCCGGCATCCGAGGACATCT.......................................2611.001.00-----------1.00-----------------------------------------------------------------------------------------------------------
......................................................................................................................................................GGGAGGAGGAGGAGGAGGAGGAAGAGT.........................................................................271.000.00------------------1.00----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GCCGGCATCCGAGGACATCTTT.....................................2211.001.00-------------------------------------------------------------------------------------------1.00---------------------------
.........................................................................................................GCCGCGGGCTGGGGGCGGTG.............................................................................................................................201.000.00------------------------------------------------1.00----------------------------------------------------------------------
.......................CCGTGGACGCCGACCGTCCGGG.............................................................................................................................................................................................................2211.001.00-------1.00---------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................CCGTGCCCCCGGCCTCGTGTCCCCCCTCGGC...3111.001.00----------------------------------------------------------------------------------------1.00------------------------------
...............................................................................................................................................................................GGGCGAAGGACGCGGAGCCGGC.....................................................2211.001.00--------------------------------------------------------------------------------------------------1.00--------------------
.............GCGCCTTTCGCCGTGGACGCCGAC.....................................................................................................................................................................................................................2411.001.00-------------------------------------------------------------------------------1.00---------------------------------------
.......................................................................................................................................................................GAGGAAGAGGGCGAAGGACGCGGAG..........................................................2511.001.00--------------------------------------1.00--------------------------------------------------------------------------------
...............................GCCGACCGTCCGGGA............................................................................................................................................................................................................1521.001.00--1.00--------------------------------------------------------------------------------------------------------------------
......................................................GGGGGGCCCCGGGGGGGCG.................................................................................................................................................................................191.000.00-1.00---------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................GAGGAGGAGGAGGAGGAATTCT.........................................................................221.000.00------------------------1.00----------------------------------------------------------------------------------------------
..........................................GGGACGAGGTAAGGGGGGTCC...........................................................................................................................................................................................211.000.00---------------------------------------------------1.00-------------------------------------------------------------------
.......................................................................................................................GCGCCGCGCCCGCGCGG..................................................................................................................171.000.00--1.00--------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................GGAAGAGGGCGAAGGACG...............................................................1811.001.00---------------------------------------------------------------------------------1.00-------------------------------------
...................................................................................................................................................................................GAAGGACGCGGAGCCGGCATCC.................................................2211.001.00----------------------------------------------------------1.00------------------------------------------------------------
...................................................................................................................................................TCAGGGAGGAGGAGGAGGAGGAGGAAGAGGGC.......................................................................3211.001.00-------------------1.00---------------------------------------------------------------------------------------------------
...........................................................................................................................................................................AAGAGGGCGAAGGACGCGGAG..........................................................2111.001.00---------------------------------------------------------1.00-------------------------------------------------------------
...............................................................................................................................................................AGGAGGAGGAGGAAGAGGGCAA.....................................................................221.000.00------------------------------1.00----------------------------------------------------------------------------------------
..............................................................................................................................................GCCACTCAGGGAGGAGAA..........................................................................................181.000.00----------------------------1.00------------------------------------------------------------------------------------------
...................................................................................................................GGGGGCGCCGCGCCCCCAT....................................................................................................................191.000.00---------------1.00-------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................AGGGCGAAGGACGCGGAGCC........................................................2011.001.00--1.00--------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................CCGGCATCCGAGGACAT.........................................1711.001.00-----------------------------------------------------------------------------------------------1.00-----------------------
......................................................................................................................GGCGCCGCGCCCGCGCGT..................................................................................................................181.000.00------------------------------------1.00----------------------------------------------------------------------------------
...............................................................................................................................................................AGGAGGAGGAGGAAGAGGCCC......................................................................211.000.00---1.00-------------------------------------------------------------------------------------------------------------------
......................................................................GGGCTGGGGCCGCCGGGC..................................................................................................................................................................181.000.00-1.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................AAGGACGCGGAGCCGGCATCCGAGGACCTTT.......................................311.000.00---1.00-------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................AGGGAGGAGGAGGAGGAGGAGGAAGAGGGC.......................................................................3011.001.00----------------------------------------------1.00------------------------------------------------------------------------
...........................................................................................................................................................................AAGAGGGCGAAGGACGCG.............................................................1811.001.00----------------1.00------------------------------------------------------------------------------------------------------
..................................................................................................................................................CTCAGGGAGGAGGAGGAGGAGGAGGCGGA...........................................................................291.000.00----------------1.00------------------------------------------------------------------------------------------------------
............................................................................................................................................................................AGAGGGCGAAGGACGCGGAGCCGGC.....................................................2511.001.00------1.00----------------------------------------------------------------------------------------------------------------
...................................ACCGTCCGGGACGAGTTT.....................................................................................................................................................................................................181.000.00--------------------1.00--------------------------------------------------------------------------------------------------
..........................................................................................................................................................GGAGGAGGAGGAGGAGGAAGACGC........................................................................2401.002.00-------------------------------------------------------------------1.00---------------------------------------------------
............................................................................................CGCCTCACCTGCGGCCGCGGGCTGG.....................................................................................................................................2511.001.00----------------------------------------------------------------1.00------------------------------------------------------
............................................................................................................................................................................................................................GCCCCCGGCCTCGTGTCCCCCCTCG.....2511.001.00--------------------------------------------------------1.00--------------------------------------------------------------
.......................................................................................................................................................................GAGGAAGAGGGCGAAGGAC................................................................1911.001.00------------------------------1.00----------------------------------------------------------------------------------------
......................................................GGGGGGCCCCGGGGGCGG..................................................................................................................................................................................181.000.00---------------------------------------------------------------1.00-------------------------------------------------------
.................................................................................................................................................................................GCGAAGGACGCGGAGCCGG......................................................1911.001.00------------------------------------------------------------------------------------------------1.00----------------------
.....................................................................................................................GGGCGCCGCGCCCGCCCG...................................................................................................................181.000.00-1.00---------------------------------------------------------------------------------------------------------------------
.................................................................GGGGAGGGCTGGGGC..........................................................................................................................................................................1501.001.00---------1.00-------------------------------------------------------------------------------------------------------------
..............................................................CCGGGGGAGGGCTGGGGA..........................................................................................................................................................................181.000.00-------------------------------------------------1.00---------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCTCT........................................................................................................................................................191.000.00---------------------------------------------------------------------1.00-------------------------------------------------
..............................................................................................................................................................................................................................CCCCGGCCTCGTGTCCTCAC........201.000.00-----------1.00-----------------------------------------------------------------------------------------------------------
.....................................................................................................TGCGGCCGCGGGCTGGTTCG.................................................................................................................................201.000.00----------------------------------------------------------------------------------1.00------------------------------------
..............................................................................................................................................................................AGGGCGAAGGACGCGGAG..........................................................1811.001.00----------------------------1.00------------------------------------------------------------------------------------------
......................................................................................................................................................GGGAGGAGGAGGAGGAGGAGTA..............................................................................221.000.00-----------------------------------1.00-----------------------------------------------------------------------------------
.....................................................................AGGGCTGGGGCCGCCGGGC..................................................................................................................................................................191.000.00------1.00----------------------------------------------------------------------------------------------------------------
..............................................................................................................................GCCCGCGCCTCACTGCTCCC........................................................................................................201.000.00--------------------1.00--------------------------------------------------------------------------------------------------
.......................................................................................................................................................................GAGGAAGAGGGCGAAGTA.................................................................181.000.00--------------------------------------1.00--------------------------------------------------------------------------------
.........................................................................................................................................................................GGAAGAGGGCGAAGGAGAAT.............................................................201.000.00---------------------------------------------------------------------------1.00-------------------------------------------
....................................................................................................................................................................GAGGAGGAAGAGGGCGAAGG..................................................................2020.500.50-----------------------------------------------------------------------------------------------------0.50-----------------
................................................................................................................................................CACTCAGGGAGGAGGAGGA.......................................................................................1920.500.50----------------------------------------------------------------------------------------------------0.50------------------
..................................................................................................................................................................AGGAGGAGGAAGAGGGCGA.....................................................................1940.500.50----------------------------------------------------------------------------------------------------------0.250.25-----------
....................................................................................................................................................................GAGGAGGAAGAGGGCGAA....................................................................1830.330.33-------------------------------------------0.33---------------------------------------------------------------------------
........................................................................................................................................................................AGGAAGAGGGCGAAGGCCGG..............................................................2030.330.33---------------------------------------------------------------------------------------------------------0.33-------------
........................................................................................................................................................................AGGAAGAGGGCGAAGG..................................................................1630.330.33--------------------------------------------------------------------------------------------------------0.33--------------
...................................................................................................................................................................GGAGGAGGAAGAGGGCGA.....................................................................1860.170.17-------0.17---------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................AGGAGGAAGAGGGCGAA....................................................................1760.170.17------------------------------------------------------------------------------------------------------------0.17----------
.........................................................................................................................................................................................................GAGGACATCTTTGGT..................................1570.140.14-------------------------------------------------------------------------------------------------------------0.14---------
.........................................................................................................................................................................................................GAGGACATCTTTGGTTCA...............................1870.140.14---------------------------------------------0.14-------------------------------------------------------------------------

Antisense strand
GCCTCCAGGGTGGGCGCCTTTCGCCGTGGACGCCGACCGTCCGGGACGAGGTAAGGGGGGCCCCGGGGGAGGGCTGGGGCCGCCGCCGCCCCCGCCTCACCTGCGGCCGCGGGCTGGGGGCGCCGCGCCCGCGCCTCACTGCGCCACTCAGGGAGGAGGAGGAGGAGGAGGAAGAGGGCGAAGGACGCGGAGCCGGCATCCGAGGACATCTTTGGTCCGTGCCCCCGGCCTCGTGTCCCCCCTCGGCGCC
.........................................................................................................................................................................((......(((.....)))....))........................................................
.....................................................................................................................................................150...............................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM532871(GSM532871)
G652N. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR029125(GSM416754)
U2OS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM339995(GSM339995)
hues6NP. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR040038(GSM532923)
G531N. (cervix)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR040015(GSM532900)
G623T. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR040041(GSM532926)
G612T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR038863(GSM458546)
MM603. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
SRR038853(GSM458536)
MELB. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
.....................................................................................................................................................................................AGGACGCGGAGCCGGCCC................................................... 1814.000.00--------2.00---3.00--------2.00-----1.00---------1.00-----------------------1.00--------------1.001.00--------1.00----------1.00---------------------
..............................................................................GGCGGGGGCGGCGGCGGC.......................................................................................................................................................... 1805.005.00----2.001.00----2.00------------------------------------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCGG......................................................................................................................................................... 183.000.00----1.002.00-----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................AGGACGCGGAGCCGGCC.................................................... 172.000.00--------------1.00------------1.00-------------------------------------------------------------------------------------------
..............................ACCTCGTCCCGGACGGTCGGCG...................................................................................................................................................................................................... 2212.002.00--------------------------2.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................ACCAAAGATGTCCTCGGAT.................................. 1912.002.00-----------------------------------------2.00-----------------------------------------------------------------------------
..................................................................................................................................................................................................AGATGTCCTCGGATGCC....................................... 1712.002.00-------------2.00---------------------------------------------------------------------------------------------------------
..............................................................................GCCGCCGCCGCCCCCGCATC........................................................................................................................................................ 202.000.00------------------------------------------------------------------------------1.00----------1.00-----------------------------
......................................................GGGGGGCCCCGGGGGCGG.................................................................................................................................................................................. 182.000.00--------1.00-----1.00--------------------------------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCG.......................................................................................................................................................... 172.000.00----1.001.00-----------------------------------------------------------------------------------------------------------------
...............................................................................GGCGGGGGCGGCGGCGG.......................................................................................................................................................... 1702.002.00-----1.00-------------------------1.00---------------------------------------------------------------------------------------
......................................................................................................................CGCGGGCGCGGCGCC..................................................................................................................... 1591.331.33-----------0.11------0.110.11--------------------------0.110.11--------------------------------------------------------------0.110.11--0.110.110.110.110.11
............................................................................................................................................................................................GGAGCCGGCATCCGACAGG........................................... 191.000.00---1.00-------------------------------------------------------------------------------------------------------------------
..............................................................................GCCGCCGCCGCCCCCGCCTGGGA..................................................................................................................................................... 231.000.00----1.00------------------------------------------------------------------------------------------------------------------
................................................................................CGCCGCCGCCCCCGCCCT........................................................................................................................................................ 181.000.00---------------------------------1.00-------------------------------------------------------------------------------------
...........................GGACGGTCGGCGTCC................................................................................................................................................................................................................ 1511.001.00-----------------------------------------------------1.00-----------------------------------------------------------------
..............................................................................GCCGCCGCCGCCCCCGCAT......................................................................................................................................................... 191.000.00------------------------1.00----------------------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCCG......................................................................................................................................................... 181.000.00----1.00------------------------------------------------------------------------------------------------------------------
.............................................................................................GCCTCACCTGCGGCCGCGT.......................................................................................................................................... 191.000.00----------------------------------------1.00------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCCA......................................................................................................................................................... 181.000.00---------------1.00-------------------------------------------------------------------------------------------------------
..............................................................................GCGGGGGCGGCGGCGGC........................................................................................................................................................... 1701.001.00-----1.00-----------------------------------------------------------------------------------------------------------------
..............................................................................GCCGCCGCCGCCCCCGTCT......................................................................................................................................................... 191.000.00-----------------1.00-----------------------------------------------------------------------------------------------------
.......................................................................GGCTGGGGCCGCCGCCGTCGG.............................................................................................................................................................. 211.000.00-----------------------------------1.00-----------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCCTCGG...................................................................................................................................................... 211.000.00----------------------------------1.00------------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGTCGG........................................................................................................................................................ 191.000.00-------------------1.00---------------------------------------------------------------------------------------------------
..................................................................................CCGCCGCCCCCGCCTCGA...................................................................................................................................................... 181.000.001.00----------------------------------------------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCTACC....................................................................................................................................................... 201.000.00------1.00----------------------------------------------------------------------------------------------------------------
......................................................................................................................................TCCCTGAGTGGCGCAGTGAG................................................................................................ 2011.001.00--------------------------------------------------------------1.00--------------------------------------------------------
.....................................................................................................................................................................................AGGACGCGGAGCCGGCCTC.................................................. 191.000.00-----------------------------------------------------------------------------------1.00-----------------------------------
..................................................................................CCGCCGCCCCCGCCTCACTCGG.................................................................................................................................................. 221.000.00-----------------------------1.00-----------------------------------------------------------------------------------------
......................GCCGTGGACGCCGACCGCC................................................................................................................................................................................................................. 191.000.00-------1.00---------------------------------------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCTCGG....................................................................................................................................................... 201.000.00-------------------------------------------------------------------------------------1.00---------------------------------
.......................................................................................................CGGCCGCGGGCTGGGGGT................................................................................................................................. 181.000.00------------------1.00----------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................CCGGGGGCACGGACCAAAGATG...................... 2211.001.00-----------1.00-----------------------------------------------------------------------------------------------------------
.........................................................................................................................GCCGCGCCCGCGCCTCAGA.............................................................................................................. 191.000.00---------------------------------------------------------------------------------------------1.00-------------------------
...............................................................................CCGCCGCCGCCCCCGTCG......................................................................................................................................................... 181.000.00-----------------------------------------------------------------1.00-----------------------------------------------------
...................................................................................GAGGCGGGGGCGGCG........................................................................................................................................................ 1501.001.00----------1.00------------------------------------------------------------------------------------------------------------
..............................................................................GCCGCCGCCGCCCCCGCATCC....................................................................................................................................................... 211.000.00------------------------------------------------------------1.00----------------------------------------------------------
......................................................GGGGGGCCCCGGGGGCGGC................................................................................................................................................................................. 191.000.00-1.00---------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................AGGACGCGGAGCCGGCCCT.................................................. 191.000.00--------------1.00--------------------------------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCCTGGGG..................................................................................................................................................... 221.000.00-------------------------------1.00---------------------------------------------------------------------------------------
........................................................GGGGCCCCGGGGGAGGGTT............................................................................................................................................................................... 191.000.00----------------------------------------------------------------------------------------------1.00------------------------
..................................................................................CCGCCGCCCCCGCCTCATG..................................................................................................................................................... 191.000.00--------------------------------------------1.00--------------------------------------------------------------------------
...................................................................................................................................................................................................GGGGCACGGACCAAAGATGTCCTCGGATGC......................... 3011.001.00-------------1.00---------------------------------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCGGTG....................................................................................................................................................... 201.000.00-----------------------------------------------------------------------1.00-----------------------------------------------
........................................................GGGGCCCCGGGGGAGGGA................................................................................................................................................................................ 181.000.00--1.00--------------------------------------------------------------------------------------------------------------------
.........................................................GGGCCCCGGGGGAGGGCGGGG............................................................................................................................................................................ 211.000.00--------------------------------------------------------------------------1.00--------------------------------------------
..............................................................................................................................................................................................................CATCTTTGGTCCGTGGCGG......................... 191.000.00-------------------------------------------------------------------------1.00---------------------------------------------
...............................................................................GCGGGGGCGGCGGCGG........................................................................................................................................................... 1601.001.00---------------------------------------------------------------------------------------1.00-------------------------------
...............................................................................CCGCCGCCGCCCCCGTTC......................................................................................................................................................... 181.000.00-------------------------------------------------------1.00---------------------------------------------------------------
......................................................................................CGCCCCCGCCTCACCAGCC................................................................................................................................................. 191.000.00-----------------------------------------------1.00-----------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGAGT......................................................................................................................................................... 181.000.00------------------------------------------------------1.00----------------------------------------------------------------
........................................................GGGGCCCCGGGGGAGGGT................................................................................................................................................................................ 181.000.00-1.00---------------------------------------------------------------------------------------------------------------------
......................................................GGGGGGCCCCGGGGGC.................................................................................................................................................................................... 161.000.00--1.00--------------------------------------------------------------------------------------------------------------------
.............................................................................GGCCGCCGCCGCCCCCAGCC......................................................................................................................................................... 201.000.00-----------------1.00-----------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................CGGGGGCACGGACCAAAGATG....................... 2111.001.00----------------------------------1.00------------------------------------------------------------------------------------
...........................................................................................................................................................................................CGGAGCCGGCATCCGAGCG............................................ 191.000.00--------------------------------------------------------------------------------------------1.00--------------------------
......................................................................................................................................................GGGAGGAGGAGGAGGAGGAGGAAGCC.......................................................................... 261.000.00------------------------------------------1.00----------------------------------------------------------------------------
........................................................................................................................................................................................................GGCACGGACCAAAGATGTCCTCG........................... 2311.001.00-------------------------------------1.00---------------------------------------------------------------------------------
......................................................GGGGGGCCCCGGGGGCC................................................................................................................................................................................... 171.000.00--------1.00--------------------------------------------------------------------------------------------------------------
........................................................GGGGCCCCGGGGGAGGGG................................................................................................................................................................................ 181.000.00--1.00--------------------------------------------------------------------------------------------------------------------
...............................................................................................................CGCGGGCGCGGCGCCCCCAGCC..................................................................................................................... 2211.001.00--------------------------------------------------1.00--------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCCTGC....................................................................................................................................................... 201.000.00------1.00----------------------------------------------------------------------------------------------------------------
..............................................................................GCCGCCGCCGCCCCCGCCTGGGG..................................................................................................................................................... 231.000.00------1.00----------------------------------------------------------------------------------------------------------------
......................................................GGGGGGCCCCGGGGGCGC.................................................................................................................................................................................. 181.000.00--------1.00--------------------------------------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGAA.......................................................................................................................................................... 171.000.00---------------------------------1.00-------------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCCAG........................................................................................................................................................ 191.000.00----------1.00------------------------------------------------------------------------------------------------------------
.............................................................................GGCCGCCGCCGCCCCCTCCG......................................................................................................................................................... 201.000.00-1.00---------------------------------------------------------------------------------------------------------------------
...............................................................................CCGCCGCCGCCCCCGCCGG........................................................................................................................................................ 191.000.00-----------------------------1.00-----------------------------------------------------------------------------------------
......................CGGTCGGCGTCCACGGC................................................................................................................................................................................................................... 1711.001.00-------1.00---------------------------------------------------------------------------------------------------------------
......................................................GGGGGGCCCCGGGGGCGGT................................................................................................................................................................................. 191.000.00----------------------------------------------------------------------1.00------------------------------------------------
................................................................................CGCCGCCGCCCCCGCCGT........................................................................................................................................................ 181.000.00------------------------------------------------------------------------------------------1.00----------------------------
...............................................................................................CTCACCTGCGGCCGCGACG........................................................................................................................................ 191.000.00----------------------1.00------------------------------------------------------------------------------------------------
................................................................................CGCCGCCGCCCCCGCCCGT....................................................................................................................................................... 191.000.00----------------------------------------1.00------------------------------------------------------------------------------
..............................................................................................................................................................................................................CACGGACCAAAGATG............................. 1520.500.50------------------------------------------0.50----------------------------------------------------------------------------
.............................................................................GGCGGGGGCGGCGGCGGCC.......................................................................................................................................................... 1950.200.20------0.20----------------------------------------------------------------------------------------------------------------
.........................................................................................................GCCCCCAGCCCGCGGC................................................................................................................................. 1650.200.20--0.20--------------------------------------------------------------------------------------------------------------------
.........................................................CCCTCCCCCGGGGCCC................................................................................................................................................................................. 1660.170.17--------------------------------------------0.17--------------------------------------------------------------------------
......................................................................................................................GGCGCCGCGCCCGCGTCG.................................................................................................................. 180.110.00----------------------------------------------------------------------------------------------------------------0.11------
......................................................................................................................GGCGCCGCGCCCGCGTCGC................................................................................................................. 190.110.00-----------------------------------------------------------------------------------------------------------------0.11-----