ID: uc001lhs.1_intron_1_0_chr10_126172896_f.3p
GENE: (2)
chr10:126176791-126177040+


(1)
AGO2.ip 		(1)
BRAIN 		(3)
BREAST 		(28)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HEART 		(6)
HELA 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(2)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TCTCTGAGGAGCCGAATTCCCTCCTCTGTCAAATAGGAATAACCCTTCTGTGTCTACCTCCCATGGCAGCTGTGATGATCAGAAAGAAATGCATCTGAGAAAGGGGGAGGACATGTGAAAGGTGTCCCTGGTAGGAGATGGGGAGGTAGGCCATGTCCTCCCAGGGCTCCGTGGCACTCTGTCTCTCTCTCTCTTTCCAGGAGTCCGCTCAGAATTTGATCAGATCGACACATCCAACCCAAACTGTGTG
.................................................................(((.((.((.....))...))...)))..(((.(((((((((((((((.(((...((...((((((.((((.((((.........)))).)))).))))))..))....)))..))))...))))))))))))))..................................................
..............................................................63.......................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029127(GSM416756)
A549. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR029126(GSM416755)
143B. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR038857(GSM458540)
D20. (cell line)		GSM359195(GSM359195)
HepG2_TAP_depl. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		TAX577745(Rovira)
total RNA. (breast)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
...................................................................AGCTGTGATGATCAGAAAGAAATGCATCTGAGA......................................................................................................................................................331220.00220.00100.0021.0013.0011.0011.0010.005.008.007.007.006.00-3.00-4.00-1.003.003.00-1.00---1.002.00-2.00---1.00----------------
......................................................................TGTGATGATCAGAAAGAAATGCATCTGAGA......................................................................................................................................................30111.0011.007.003.00-1.00--------------------------------------------
...................................................................AGCTGTGATGATCAGAAAGAAATGC..............................................................................................................................................................2519.009.00-----------6.00-3.00----------------------------------
..................................................................CAGCTGTGATGATCAGAAAGAAATGCATCTGAGA......................................................................................................................................................3418.008.00----------------1.00--3.001.00-1.00---------------1.00--1.00------
...........................................................................TGATCAGAAAGAAATGCATCTGAGA......................................................................................................................................................2518.008.005.00-----------3.00-----------------------------------
..............................................................................TCAGAAAGAAATGCATCTGAGA......................................................................................................................................................2215.005.00------5.00-----------------------------------------
...................................................................AGCTGTGATGATCAGAAAGAAATGCATCTGATA......................................................................................................................................................334.000.003.00---1.00-------------------------------------------
...................................................................AGCTGTGATGATCAGAAAGAAATGCAT............................................................................................................................................................2714.004.00---------------------2.00------------------1.00-1.00-----
..........................................................................ATGATCAGAAAGAAATGCATCTGAGA......................................................................................................................................................2613.003.00-3.00----------------------------------------------
...................................................................AGCTGTGATGATCAGAAAGAAATGCA.............................................................................................................................................................2613.003.001.00----------------------------------1.00----------1.00-
...........CCGAATTCCCTCCTCTGC.............................................................................................................................................................................................................................182.000.00--------------------------2.00---------------------
...................................................................AGCTGTGATGATCAGAAAGAAATGCATCTGAG.......................................................................................................................................................3212.002.00-----1.00--------------------------------------1.00---
.............................................................................ATCAGAAAGAAATGCATCTGAGA......................................................................................................................................................2312.002.00--------------1.00---------1.00-----------------------
....................................................................................................................................................................................................................AATTTGATCAGATCG.......................1511.001.00----------------------------------1.00-------------
.............................................................................................................................CCCTGGTAGGAGATGGGGAGGCATG....................................................................................................251.000.00-----------------------1.00------------------------
................................................................................................................................................................................CTCTGTCTCTCTCTCTCTTTGTGC..................................................241.000.00-----------------------1.00------------------------
..................................................................CAGCTGTGATGATCAGAAAGAAAT................................................................................................................................................................2411.001.00----------------1.00-------------------------------
...........................................................................................................................................................TCCTCCCAGGGCTCCGCC.............................................................................181.000.001.00-----------------------------------------------
..................................................................CAGCTGTGATGATCAGAAAGAAATG...............................................................................................................................................................2511.001.00------------------------------------1.00-----------
......................................................................TGTGATGATCAGAAAGAAATGCA.............................................................................................................................................................2311.001.00---1.00--------------------------------------------
...................................................................AGCTGTGATGATCAGAAAGAAATGCATCTGAGC......................................................................................................................................................3311.002.001.00-----------------------------------------------
...................................................................AGCTGTGATGATCAGAAAGAAAT................................................................................................................................................................2311.001.00---------------------------------------1.00--------
..............................................................................................................................................................................................................GCTCAGAATTTGATCAGATCGACAC...................2511.001.00-------------------------------------1.00----------
......................................ATAACCCTTCTGTGTGAAG.................................................................................................................................................................................................191.000.00---------------------------------------------1.00--
............................................................................................................................................................................................................................CAGATCGACACATCCAAC............1811.001.00----------------------------1.00-------------------
...................................................................................................................................................................................................................GAATTTGATCAGATCGACACATA................231.000.00-----------------------------1.00------------------
.................................................................................................................................................................................................................CAGAATTTGATCAGATCGACACATCCAACCC..........3111.001.00----------------------------1.00-------------------
...........................................................................................................................................................................TGGCACTCTGTCTCTCTCTCTCTTTCC....................................................2711.001.00-------------1.00----------------------------------
...................................................................................................................................................................................................................GAATTTGATCAGATCGACATA..................211.000.00---------------1.00--------------------------------
..................................................................CAGCTGTGATGATCAGAAAGAAATGCATCTGAG.......................................................................................................................................................3311.001.00----------------------1.00-------------------------
...........................................................................................................................................................................................................................TCAGATCGACACATCCAACC...........2011.001.00-----------------------------1.00------------------
..................................................................CAGCTGTGATGATCAGAAAGAAATGC..............................................................................................................................................................2611.001.00---------------------------------1.00--------------
........................................................................................................................................................................................................GAGTCCGCTCAGAATTTGATCAGATC........................2611.001.00--------------------------------1.00---------------
..........................................................................................................................................................................................................................ATCAGATCGACACATCCAACCC..........2211.001.00---------------1.00--------------------------------
.........................................................................................................GGAGGACATGTGAAAAGT...............................................................................................................................181.000.00---------------1.00--------------------------------
.............................................................................................................................................................................GCACTCTGTCTCTCTCTCTC.........................................................2011.001.00------------------------------1.00-----------------
..................................................................................................................................................................................................................AGAATTTGATCAGATCGACACA..................2211.001.00---------------1.00--------------------------------
...........................................................................TGATCAGAAAGAAATGCA.............................................................................................................................................................1820.500.50----------0.50-------------------------------------
.....................................................................................................AGGGGGAGGACATGTG.....................................................................................................................................1630.330.33-----------------------------------------------0.33
................................................................................AGAAAGAAATGCATCTG.........................................................................................................................................................1740.250.25-----------0.25------------------------------------

Antisense strand
TCTCTGAGGAGCCGAATTCCCTCCTCTGTCAAATAGGAATAACCCTTCTGTGTCTACCTCCCATGGCAGCTGTGATGATCAGAAAGAAATGCATCTGAGAAAGGGGGAGGACATGTGAAAGGTGTCCCTGGTAGGAGATGGGGAGGTAGGCCATGTCCTCCCAGGGCTCCGTGGCACTCTGTCTCTCTCTCTCTTTCCAGGAGTCCGCTCAGAATTTGATCAGATCGACACATCCAACCCAAACTGTGTG
.................................................................(((.((.((.....))...))...)))..(((.(((((((((((((((.(((...((...((((((.((((.((((.........)))).)))).))))))..))....)))..))))...))))))))))))))..................................................
..............................................................63.......................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029127(GSM416756)
A549. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR029126(GSM416755)
143B. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR038857(GSM458540)
D20. (cell line)		GSM359195(GSM359195)
HepG2_TAP_depl. (cell line)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		TAX577745(Rovira)
total RNA. (breast)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................................................................AGTCCGCTCAGAATTTGTT.............................. 191.000.00-------------1.00----------------------------------
.....................................AATAACCCTTCTGTGTTATT................................................................................................................................................................................................. 201.000.00-------------------------------------------1.00----