ID: uc001len.3_intron_0_0_chr10_121485872_f.5p
GENE: (1)
chr10:121485822-121486071+


(2)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(5)
BREAST
(8)
CELL-LINE
(9)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(1)
LIVER
(3)
OTHER
(15)
SKIN

Sense strand
GCGCGCGCTGTGGTGCAGCCGCCGCGACGGCGGCCTCCAGCTCCGACCCGGTGAGGCTGGCGGTGCGGGCGGGGGGCACCCCGGGCCAGGGCGGGGAGAGGAGGGGGCGCGGCCGGACCCCTCAGCCGGGCGGGAGGAGCCGCCTGCGGGCCTGGTGAGGCGGGGCGGGGCGGGCTGCGAGCGCGCGAGCTGTCATTATTCCCTGACTGGAAGGAGCCTGGCCTTTCTCCGAGACAGCGCCGAGCCCCTA
...........................................................................................................(((((((...((((((.((.((((((......))))))))..((((....)))).))).)))...))))))).......................................................................
..................................................................................................99.................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189782GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR343336DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR040038(GSM532923)
G531N. (cervix)
GSM532873(GSM532873)
G699N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR040028(GSM532913)
G026N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
.......................................................................................................GGGGCGCGGCCGGACAGGC................................................................................................................................199.000.002.00-4.00-1.00----1.001.00------------------------------------
.......................................................................................................GGGGCGCGGCCGGACAG..................................................................................................................................178.000.004.00-2.00----------------1.00---------1.00-----------------
.......................................................................................................GGGGCGCGGCCGGACAGG.................................................................................................................................186.000.004.00-1.00-----------1.00--------------------------------
.......................................................................................................GGGGCGCGGCCGGACCG..................................................................................................................................173.000.003.00----------------------------------------------
..................CCGCCGCGACGGCGGGA.......................................................................................................................................................................................................................173.000.00-3.00---------------------------------------------
......................................................................................................GGGGGCGCGGCCGGA.....................................................................................................................................1552.002.00-1.00------0.20---------------------------0.40---0.20-0.20----
.................................................................................................................................................................GGGGCGGGGCGGGCTTT........................................................................171.000.001.00----------------------------------------------
.......................................................................................................GGGGCGCGGCCGGACCGG.................................................................................................................................181.000.00----------------------------------1.00------------
..................CCGCCGCGACGGCGGGG.......................................................................................................................................................................................................................171.000.00---1.00-------------------------------------------
................................................................................................................................................................CGGGGCGGGGCGGGCTGCATGC....................................................................221.000.00-------------------------1.00---------------------
.......................................................................................................GGGGCGCGGCCGGACAT..................................................................................................................................171.000.001.00----------------------------------------------
.....................................................................................................AGGGGGCGCGGCCGGAA....................................................................................................................................1711.001.00---------------------------------1.00-------------
.................................................................................................................................................................GGGGCGGGGCGGGCTTTC.......................................................................181.000.001.00----------------------------------------------
............................................GACCCGGTGAGGCTGG..............................................................................................................................................................................................1611.001.00-------------1.00---------------------------------
........................................................................................GGGCGGGGAGAGGAGCGGA...............................................................................................................................................191.000.00----------------------------1.00------------------
.............................................................................................................................CCGGGCGGGAGGAGCGC............................................................................................................171.000.00-1.00---------------------------------------------
....................................................................................................................................................................................................................GGAGCCTGGCCTTTCTGAAG..................201.000.00-----1.00-----------------------------------------
.......................................................................................................GGGGCGCGGCCGGACCCCCCCG.............................................................................................................................221.000.00---1.00-------------------------------------------
..................................................GTGAGGCTGGCGGTGCGG......................................................................................................................................................................................1811.001.00--------------------1.00--------------------------
.....................................................................................................AGGGGGCGCGGCCGGAAT...................................................................................................................................1811.001.00-1.00---------------------------------------------
.............................................................................................................................................................AGGCGGGGCGGGGCGG.............................................................................1601.001.00------1.00----------------------------------------
....................................................GAGGCTGGCGGTGCGATTT...................................................................................................................................................................................191.000.00---------------------------1.00-------------------
.......................................................................................................GGGGCGCGGCCGGACCCCCG...............................................................................................................................201.000.00---1.00-------------------------------------------
....................GCCGCGACGGCGGCCTCCAGCTCCGACCCGG.......................................................................................................................................................................................................3111.001.00-------------------------------1.00---------------
.............................................................................................................................................................AGGCGGGGCGGGGCGGTTCG.........................................................................2001.001.00-----------1.00-----------------------------------
.....................................................................................................AGGGGGCGCGGCCGGA.....................................................................................................................................1611.001.00----------------------1.00------------------------
...................CGCCGCGACGGCGGCCCCGG...................................................................................................................................................................................................................201.000.00---1.00-------------------------------------------
..................................................................................................................................................................GGGCGGGGCGGGCTG.........................................................................1501.001.00------1.00----------------------------------------
.........................................................................................................................................................GGTGAGGCGGGGCGGT.................................................................................161.000.00---------------1.00-------------------------------
.......................................................................................................GGGGCGCGGCCGGACACGC................................................................................................................................191.000.001.00----------------------------------------------
.......................................................................................................GGGGCGCGGCCGGACAGGG................................................................................................................................191.000.001.00----------------------------------------------
...........................................................GCGGTGCGGGCGGGGGGC.............................................................................................................................................................................1811.001.00---1.00-------------------------------------------
.............................................................................ACCCCGGGCCAGGGCGG............................................................................................................................................................1720.500.50-----------------------------------0.50-----------
......................................................................................................................................................CCTGGTGAGGCGGGGGG...................................................................................1790.440.33--------------------------------------0.220.22-------
......................................................................................................GGGGGCGCGGCCGGAAAG..................................................................................................................................1850.402.000.20----------------------------------------0.20-----
......................................................................................................GGGGGCGCGGCCGGAAC...................................................................................................................................1750.402.000.40----------------------------------------------
......................................................................................................................................................CCTGGTGAGGCGGGG.....................................................................................1590.330.33-0.22--------------------------------------------0.11
......................................................................................................................................................CCTGGTGAGGCGGGGGGG..................................................................................1890.220.33--------------------------------------------0.110.11-
......................................................................................................GGGGGCGCGGCCGGAAGGG.................................................................................................................................1950.202.00-------------------------------------------0.20---
......................................................................................................GGGGGCGCGGCCGGAACGG.................................................................................................................................1950.202.000.20----------------------------------------------
......................................................................................................GGGGGCGCGGCCGGAAA...................................................................................................................................1750.202.000.20----------------------------------------------

Antisense strand
GCGCGCGCTGTGGTGCAGCCGCCGCGACGGCGGCCTCCAGCTCCGACCCGGTGAGGCTGGCGGTGCGGGCGGGGGGCACCCCGGGCCAGGGCGGGGAGAGGAGGGGGCGCGGCCGGACCCCTCAGCCGGGCGGGAGGAGCCGCCTGCGGGCCTGGTGAGGCGGGGCGGGGCGGGCTGCGAGCGCGCGAGCTGTCATTATTCCCTGACTGGAAGGAGCCTGGCCTTTCTCCGAGACAGCGCCGAGCCCCTA
...........................................................................................................(((((((...((((((.((.((((((......))))))))..((((....)))).))).)))...))))))).......................................................................
..................................................................................................99.................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189782GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR343336DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR040038(GSM532923)
G531N. (cervix)
GSM532873(GSM532873)
G699N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR040028(GSM532913)
G026N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
....................................................................................................................................................................GCGGGGCGGGCTGCGAGCTG.................................................................. 201.000.00-----1.00-----------------------------------------
..............................................................................................GGAGAGGAGGGGGCGGGCG......................................................................................................................................... 191.000.00-------1.00---------------------------------------
...............................GGCCTCCAGCTCCGACCCGGTGTCTG................................................................................................................................................................................................. 261.000.00------------------------------1.00----------------
.........................................................................................................GGCGCGGCCGGACCCCG................................................................................................................................ 171.000.00-1.00---------------------------------------------
.................................................................................................................................................................................................................................TCTCCGAGACAGCGCCGAG...... 191.000.00---------------------1.00-------------------------
................................................................................................................................................TGCGGGCCTGGTGAGCACT....................................................................................... 191.000.00------------1.00----------------------------------
..............................................................................................................................................................................CTGCGAGCGCGCGAGAGC.......................................................... 181.000.00-------1.00---------------------------------------
........................................................................................GGGCGGGGAGAGGAGGCCG............................................................................................................................................... 191.000.00--------------------------------1.00--------------
....................................CCAGCTCCGACCCGGTCTTG.................................................................................................................................................................................................. 201.000.00-----------------------1.00-----------------------
...........................GTCGGAGCTGGAGGCCGCCG........................................................................................................................................................................................................... 2011.001.00----1.00------------------------------------------
....................GCCGCGACGGCGGCCCGG.................................................................................................................................................................................................................... 181.000.001.00----------------------------------------------
...............................................................................................................CGGCTGAGGGGTCCGGC.......................................................................................................................... 1711.001.00------------------1.00----------------------------
.............................................................GGTGCGGGCGGGGGGA............................................................................................................................................................................. 161.000.00----------------1.00------------------------------
..............GCAGCCGCCGCGACGCT........................................................................................................................................................................................................................... 171.000.00-----------------1.00-----------------------------
.................................................................................................................................................................................................................................GCGCTGTCTCGGAGA.......... 1511.001.00--------1.00--------------------------------------
...............................................................................................................................................................................TGCGAGCGCGCGAGCCG.......................................................... 171.000.00---1.00-------------------------------------------
............................GTCGGAGCTGGAGGCCGCC........................................................................................................................................................................................................... 1930.330.33-------------------------------------0.33---------