ID: uc001lec.2_intron_1_0_chr10_120928855_r.3p
GENE: (5)
chr10:120928805-120929054-


(1)
AGO3.ip 		(1)
B-CELL 		(1)
BREAST 		(9)
CELL-LINE 		(4)
HEART 		(3)
HELA 		(2)
LIVER 		(2)
OTHER 		(4)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
GTACTGCCTTTGTTAAAGCATCTGTCATCAGTAAGAGATGATAAGTTTTTTGCACAACAGTGAAAACCCCACCTTTAAGCATATGATTACGCTTAATAAATATTTTATTAAAAGGAGAATTAAAGACCTAAAAGGGAAGAAGTTAGACTGTTCTAGTTCTGGTACTGTTGAGGCACTGATGAGGATAAATGATCATGCAGAGGTCTCTTCATAATTGACCCCAATGGAGTCATCAAGCATTTGAGCGTCA
...........................................................................(((((.((....)).))))).....((((((......((.....((((..(((..((..((((..((.....)).))))..))..)))....))))....))....))))))...............................................................
...........................................................................76.................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)
....................................................................................................................................AGGGAAGAAGTTAGACTGTTCTAGTTCTGGTACTGTTGAGGCACTGATGAGGATAAATGATCATGCAG..................................................6819.009.009.00------------------------------
........................................................................................................................................AAGAAGTTAGACTGTTCTAGTTCTGGTACTGTTGAGGCACTGATGAGGATAAATGATCATGCAG..................................................6419.009.009.00------------------------------
......................................................................................................................................GGAAGAAGTTAGACTGTTCTAGTTCTGGTACTGTTGAGGCACTGATGAGGATAAATGATCATGCAG..................................................6616.006.00--6.00----------------------------
..................................................................................................................................................................TACTGTTGAGGCACTGATGAGGAAT...............................................................252.000.00--------2.00----------------------
.........................................................................................................................................................................................................................ACCCCAATGGAGTCATCAAGCATCTG.......262.000.00-------2.00-----------------------
................................................................................ATATGATTACGCTTAGGCC.......................................................................................................................................................192.000.00-2.00-----------------------------
.........................................................................................................................................................................................................................................CAAGCATTTGAGCGTC.1612.002.00---2.00---------------------------
................................................................................ATATGATTACGCTTAGG.........................................................................................................................................................172.000.00-1.00-------------------1.00---------
.......................................................................................................................................................TCTAGTTCTGGTACTGTTGAGGC............................................................................2312.002.00---------2.00---------------------
....................................................................................................................................................................................................................AATTGACCCCAATGGAGTCATCAAGCATTTGAGCGT..3612.002.00--------------1.00-----------1.00----
..................................................................................................................................................................................................ATGCAGAGGTCTCTTCAC......................................181.000.00-----------------------1.00-------
...................................................................................................................................................................................TGAGGATAAATGATCATGCA...................................................2011.001.00-------------------1.00-----------
.........................................................................................................................................AGAAGTTAGACTGTTCTAGT.............................................................................................2011.001.00-------------------------1.00-----
............................................................................................................................................................................................................................CCAATGGAGTCATCAAGCATT.........2111.001.00----------1.00--------------------
..........................................................................................................................................................................AGGCACTGATGAGGATAAATGA..........................................................2211.001.00----------------------1.00--------
.....................................................................................................................................................................................AGGATAAATGATCATGCAG..................................................1911.001.00-----------------1.00-------------
............................................................................................................................GACCTAAAAGGGAAGAAGTTAGA.......................................................................................................2311.001.00----------1.00--------------------
.........................................................................................................................................................................................................................................CAAGCATTTGAGCGTCA1711.001.00---1.00---------------------------
......................................................................................................................................................................................................................................CATCAAGCATTTGAGCGTC.1911.001.00------1.00------------------------
................................................................................ATATGATTACGCTTATTCC.......................................................................................................................................................191.000.00-1.00-----------------------------
..................................................................................................................................AAAGGGAAGAAGTTAGACTGTTC.................................................................................................2311.001.00-----------1.00-------------------
................................................................................ATATGATTACGCTTATTC........................................................................................................................................................181.000.00-1.00-----------------------------
..............................................................AAAACCCCACCTTTAAGCATATGATTACG...............................................................................................................................................................2911.001.00-----1.00-------------------------
..........................................................................................GCTTAATAAATATTTTATTAG...........................................................................................................................................211.000.00-------------1.00-----------------
.................................................................................................................GGAGAATTAAAGACCTAAAAGGGAAGA..............................................................................................................2711.001.00------------------1.00------------
..................................................................................................................................AAAGGGAAGAAGTTAGACTGTTCTAG..............................................................................................2611.001.00----1.00--------------------------
...................................................................................................................................AAGGGAAGAAGTTAGACTGTTCTAG..............................................................................................2511.001.00----1.00--------------------------
................................................................................ATATGATTACGCTTAGTCC.......................................................................................................................................................191.000.00-1.00-----------------------------
..................................................................................................................................................................................................................................GAGTCATCAAGCATTTGAG.....1911.001.00----------------1.00--------------
.........................................................................................................................AAAGACCTAAAAGGGAAGAAGTTAGACTGTTCTAG..............................................................................................3511.001.00----1.00--------------------------
............................................................................................................................................................................................................................CCAATGGAGTCATCAAGCATTT........2211.001.00------------------------1.00------
........................................................................................................................................AAGAAGTTAGACTGTTCTAG..............................................................................................2011.001.00----1.00--------------------------
............................................................................................................................................................................................................................CCAATGGAGTCATCAAGCATTTGAGC....2611.001.00---1.00---------------------------
..........................................................................................................................................GAAGTTAGACTGTTCTAGCT............................................................................................201.000.00------------1.00------------------
.............................................................................................................................ACCTAAAAGGGAAGAAACA..........................................................................................................191.000.00---------------------------1.00---
...............................................................AAACCCCACCTTTAAGCATATGAT...................................................................................................................................................................2411.001.00------1.00------------------------
................................................................................ATATGATTACGCTTATT.........................................................................................................................................................171.000.00-1.00-----------------------------
....................................................................................................................................................................................GAGGATAAATGATCATG.....................................................1721.001.00---------------1.00---------------
.................................................................................................................................................................GTACTGTTGAGGCACTGAT......................................................................1911.001.00--------------------1.00----------
........................................................................................................................................................................................................AGGTCTCTTCATAATTG.................................1720.500.50----------------------------0.50--
.................................................................................................................................................................................................................................GGAGTCATCAAGCATTTG.......1820.500.50-----------------------------0.50-
..............................................................................................................................................................................................................................AATGGAGTCATCAAGCA...........1730.330.33---0.33---------------------------
...............................................................................................................................................................TGGTACTGTTGAGGC............................................................................1540.250.25------------------------------0.25

Antisense strand
GTACTGCCTTTGTTAAAGCATCTGTCATCAGTAAGAGATGATAAGTTTTTTGCACAACAGTGAAAACCCCACCTTTAAGCATATGATTACGCTTAATAAATATTTTATTAAAAGGAGAATTAAAGACCTAAAAGGGAAGAAGTTAGACTGTTCTAGTTCTGGTACTGTTGAGGCACTGATGAGGATAAATGATCATGCAGAGGTCTCTTCATAATTGACCCCAATGGAGTCATCAAGCATTTGAGCGTCA
...........................................................................(((((.((....)).))))).....((((((......((.....((((..(((..((..((((..((.....)).))))..))..)))....))))....))....))))))...............................................................
...........................................................................76.................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)
...................................AGATGATAAGTTTTTTAG..................................................................................................................................................................................................... 181.000.00-----1.00-------------------------
..............................................................................................................AAAGGAGAATTAAAGAGG.......................................................................................................................... 181.000.00-----1.00-------------------------