ID: uc001lcb.2_intron_5_0_chr10_116602986_f.5p
GENE: (6)
chr10:116602936-116603185+


(2)
AGO2.ip
(1)
B-CELL
(1)
BREAST
(20)
CELL-LINE
(1)
CERVIX
(1)
HELA
(3)
LIVER
(1)
OTHER
(1)
SKIN
(1)
XRN.ip

Sense strand
ATCAGGATTACAATTTAGTGAATTCTTTGTTAAATCTTACTAGAAGTCCTGTGAGTTATGGTCCTTACTTTTTCCCCCCTAACATTATTTCAATAATGTGTATTTATTTATTTTTTTAATTTTAATTTTTAATTTATTTTTTTTTTTGAGATGGAGTCTTGCTGTGTTGTCCAGGCTGGAGTACAGTGGTGCGATCTTGGCTCACTGCAACCTCCGCCTCTGGGTTCAAGCGATTCTCCTGCCTCAGCCT
....................................................................................................................................((((((((.......))))))))((.((((((((...(((.....))).)))))))).))..........................................................
.......................................................................................................................120.......................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040028(GSM532913)
G026N. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR037931(GSM510469)
293GFP. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577590(Rovira)
total RNA. (breast)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
............................................................................................................................ATTTTTAATTTATTTTTTTTAG........................................................................................................2222.000.00---13.008.00--1.00------------------------
............................................................................................................................ATTTTTAATTTATTTTTTTTTTTTAG....................................................................................................263.000.00---2.001.00---------------------------
..................................................................................................................................AATTTATTTTTTTTTTGGCT....................................................................................................202.000.00------2.00-------------------------
......................................................................................................................................................................TTGTCCAGGCTGGAGTACAGCGAC............................................................242.000.00--2.00-----------------------------
......................................................................................................................................................................................................GGCTCACTGCAACCTCCGCCTATA............................242.000.00----------------2.00---------------
...................................................................................................................................................................................................................................AAGCGATTCTCCTGCCTCAGCCTGGCT272.000.00-2.00------------------------------
....................................................................................................................................................................TGTTGTCCAGGCTGGAGTACTCTG..............................................................242.000.00--------------2.00-----------------
..................................................................................................................................AATTTATTTTTTTTTTTGCTAT..................................................................................................221.000.00------------1.00-------------------
.................................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCGGAG............................291.000.00-1.00------------------------------
...............................................................................................................................TTTAATTTATTTTTTTTTTTTATG...................................................................................................241.000.00---------1.00----------------------
....................................................................................................................................................................TGTTGTCCAGGCTGGAGTACTCC...............................................................231.000.00--1.00-----------------------------
.................................................................................................................................................................................GGAGTACAGTGGTGCGCAT......................................................191.000.00------1.00-------------------------
...........................................................................................................................................................................................GGTGCGATCTTGGCTCACTGCAACCTCCGCC................................3101.001.00-------------1.00------------------
.....................................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCGGGT..........................271.000.00-1.00------------------------------
....................................................................................................................................................................TGTTGTCCAGGCTGGAGTACAGTGCGC...........................................................271.000.00-1.00------------------------------
....................................................................................................................................................................................................................................AGCGATTCTCCTGCCTCAGCCTGGTG261.000.00-1.00------------------------------
..................................................................................................................................................................................................TCTTGGCTCACTGCAACCTCCGCCGGGT............................281.000.00--1.00-----------------------------
..........................................................................................................................................................AGTCTTGCTGTGTTGTCCAGGCTGGGGAG...................................................................291.000.00--1.00-----------------------------
.......................................................................................................................................................................................................GCTCACTGCAACCTCCGCCTCTAAA..........................251.000.00------------------------1.00-------
.................................................................................................................................TAATTTATTTTTTTTTTTTTCC...................................................................................................221.000.00---------1.00----------------------
...............................................................................................................................................................TGCTGTGTTGTCCAGGCTGACA.....................................................................221.000.001.00-------------------------------
.........................................................................................................ATTTATTTTTTTAATTTTAATTTTAAG......................................................................................................................271.000.00---1.00----------------------------
.....................................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCTGCGT.........................281.000.00--1.00-----------------------------
........................................................................................................................................................................GTCCAGGCTGGAGTACAGTGCATG..........................................................241.000.00------------1.00-------------------
.................................................................................................................................TAATTTATTTTTTTTTTTCA.....................................................................................................201.000.00----------1.00---------------------
..................................................................................................................................AATTTATTTTTTTTTTTGGCT...................................................................................................211.000.00------1.00-------------------------
......................................................................................................................................................................................ACAGTGGTGCGATCTTGGCTCACCGCG.........................................271.000.00----------1.00---------------------
...................................................................................................................................................................GTGTTGTCCAGGCTGGAGTACAGCAGC............................................................271.000.00-1.00------------------------------
.............................................................................................................................TTTTTAATTTATTTTTCTAG.........................................................................................................201.000.00---1.00----------------------------
..........................................................................................................................................................................................................................TCTGGGTTCAAGCGATTCTCCTGCCTCAGAGG321.000.00-1.00------------------------------
.................................................................................................................................................TTGAGATGGAGTCTTGCTGGGC...................................................................................221.000.00-1.00------------------------------
................................................................................................................................................TTTGAGATGGAGTCTTGCTGAGCC..................................................................................241.000.001.00-------------------------------
..............................................................................................................................................................................................................GCAACCTCCGCCTCTGG...........................1701.001.00-------------1.00------------------
..............................................................................................................................TTTTAATTTATTTTTTTTTTTACTT...................................................................................................251.000.00-------1.00------------------------
.............................................................................................................................TTTTTAATTTATTTTTTTTTCAG......................................................................................................231.000.00---------1.00----------------------
...................................................................................................................................................................................................CTTGGCTCACTGCAACCTCCGGGTC..............................251.000.00--1.00-----------------------------
................................................................................................................................TTAATTTATTTTTTTTTTTTCAG...................................................................................................231.000.00----1.00---------------------------
.....................................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCTCTGGGACC.......................301.000.00-1.00------------------------------
......................................................................................................................................................................TTGTCCAGGCTGGAGTACGCG...............................................................211.000.001.00-------------------------------
.............................................................................................................................................................................GGCTGGAGTACAGTGGTGCG.........................................................2001.001.00---------------1.00----------------
...........................................................................................................................................................................................................ACTGCAACCTCCGCCTCTGGGGCCT......................251.000.00--1.00-----------------------------
.....................ATTCTTTGTTAAATCTTACTAGAAGT...........................................................................................................................................................................................................2611.001.00--------------------------1.00-----
.......................................................................................................................................ATTTTTTTTTTTGAGATGGGAGC............................................................................................231.000.00--1.00-----------------------------
..................................................................................................................................................TGAGATGGAGTCTTGCTGGGC...................................................................................211.000.00------------------1.00-------------
.................................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCTCTGGGAC........................331.000.00--1.00-----------------------------
...........................................................................................................................................................................CAGGCTGGAGTACAGTGGTTTC.........................................................221.000.00-----1.00--------------------------
...........................................................................................................................................................................................GGTGCGATCTTGGCTAAGA............................................191.000.00-----------------------------1.00--
.........................................................................................................................................................................TCCAGGCTGGAGTACAGTGCGC...........................................................221.000.00-1.00------------------------------
.........................................................................................................................................................................TCCAGGCTGGAGTACAGTGGTGCGACCAG....................................................291.000.00--1.00-----------------------------
............................................................................................................................ATTTTTAATTTATTTTTTTAAG........................................................................................................221.000.00----1.00---------------------------
...................................................................................................................................................................................................................................AAGCGATTCTCCTGCCTCAGCCTGCTT271.000.00------1.00-------------------------
.....................................................................................................ATTTATTTATTTTTTTAATTCAAG.............................................................................................................................241.000.00--1.00-----------------------------
...........................................................................................................................................................................................................ACTGCAACCTCCGCCTCTGGGTTCGGGC...................281.000.00-1.00------------------------------
..............................................................................................................................TTTTAATTTATTTTTTTTTTCTAG....................................................................................................241.000.00-------1.00------------------------
.................................................................................................................................TAATTTATTTTTTTTTTTTTGC...................................................................................................221.000.00-1.00------------------------------
.....................................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCGGGT............................251.000.00--1.00-----------------------------
.................................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCTAGGT...........................301.000.00--1.00-----------------------------
.....................................................................................................................................................................................TACAGTGGTGCGATCTTGGCTCCGC............................................251.000.00--1.00-----------------------------
.............................................................................................................................TTTTTAATTTATTTTTCTCC.........................................................................................................201.000.00----------1.00---------------------
.......................................................................................................................................ATTTTTTTTTTTGAGATGGCGGA............................................................................................231.000.00--1.00-----------------------------
....................................................................................................................................................AGATGGAGTCTTGCTGTGTTTAAA..............................................................................241.000.00----------------------1.00---------
...............................................................................................................................TTTAATTTATTTTTTTTTTTTTTT...................................................................................................241.000.00---1.00----------------------------
.................................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCGGCG............................291.000.00-1.00------------------------------
...............................................................................................................................................................................CTGGAGTACAGTGGTGCGA........................................................1901.001.00----------------------------1.00---
............................................................................................................................ATTTTTAATTTATTTTTTTTTTTAG.....................................................................................................251.000.00-------1.00------------------------
..............................................................................................................................TTTTAATTTATTTTTTTTTTTG......................................................................................................2230.330.33---0.33----------------------------
................................................................................................................................TTAATTTATTTTTTTTTTTG......................................................................................................2070.140.14---0.14----------------------------

Antisense strand
ATCAGGATTACAATTTAGTGAATTCTTTGTTAAATCTTACTAGAAGTCCTGTGAGTTATGGTCCTTACTTTTTCCCCCCTAACATTATTTCAATAATGTGTATTTATTTATTTTTTTAATTTTAATTTTTAATTTATTTTTTTTTTTGAGATGGAGTCTTGCTGTGTTGTCCAGGCTGGAGTACAGTGGTGCGATCTTGGCTCACTGCAACCTCCGCCTCTGGGTTCAAGCGATTCTCCTGCCTCAGCCT
....................................................................................................................................((((((((.......))))))))((.((((((((...(((.....))).)))))))).))..........................................................
.......................................................................................................................120.......................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040028(GSM532913)
G026N. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR037931(GSM510469)
293GFP. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577590(Rovira)
total RNA. (breast)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.....................................................................................................................................................GATGGAGTCTTGCTGTGTTGCT............................................................................... 2215.000.0012.00----3.00--------------------------
.......................................................................................................................................................TGGAGTCTTGCTGTGTTGCCTT............................................................................. 229.000.008.00----1.00--------------------------
.............................................................................................................................................................................GGCTGGAGTACAGTGGTGCGATGGC.................................................... 252.000.00-1.001.00-----------------------------
.....................................................................................................................................................GATGGAGTCTTGCTGTGTTGCTA.............................................................................. 232.000.002.00-------------------------------
.............................................................................................................................................................................GGCTGGAGTACAGTGGTGCGATGGGC................................................... 262.000.00-2.00------------------------------
.............................................................................................................................................................................GGCTGGAGTACAGTGGTGCGAATA..................................................... 242.000.00--------------------1.00--1.00--------
.......................................................................................................................................................TGGAGTCTTGCTGTGTTGCCCT............................................................................. 222.000.002.00-------------------------------
............................................................................................................................................................................................................................TGGGTTCAAGCGATTCTCCTGCCTT..... 252.000.00-----2.00--------------------------
...................................................................................................................................................................................................CTTGGCTCACTGCAACCTCCGCCG............................... 242.000.00-2.00------------------------------
........................................................................................................................................................................................................CTCACTGCAACCTCCGCCTCTGGGTTGG...................... 282.000.00-2.00------------------------------
..................................................................................................................................................ACAGCAAGACTCCATCTCA..................................................................................... 1902.002.00-----------2.00--------------------
...................................................................................................................................................................................................CTTGGCTCACTGCAACCTCCGCCTCTGTTT......................... 301.000.00-1.00------------------------------
...........................................................................................................................................................................................GGTGCGATCTTGGCTCACTGT.......................................... 211.000.00---------------------------1.00----
.............................................................................................................................................................................GGCTGGAGTACAGTGGTGCGATCTGC................................................... 261.000.00-1.00------------------------------
......................................................................................................................................................ATGGAGTCTTGCTGTGTTGTCCAGGCTTCCA..................................................................... 311.000.00--1.00-----------------------------
....................................................................................................................................................................TGTTGTCCAGGCTGGAGTTAG................................................................. 211.000.00--------1.00-----------------------
.....................................................................................................................................................GATGGAGTCTTGCTGTGTCTA................................................................................ 211.000.00--1.00-----------------------------
.........................................................................................................................................................................................................CCCAGAGGCGGAGGTTGCAGTGA.......................... 2301.001.00--------1.00-----------------------
.............................................................................................................................................................................GGCTGGAGTACAGTGGTGCGAGGGC.................................................... 251.000.00-1.00------------------------------
....................................................................................................................................................AGATGGAGTCTTGCTGTGTTGTACC............................................................................. 251.000.00-----1.00--------------------------
.....................................................................................................................................................GATGGAGTCTTGCTGTGTTCT................................................................................ 211.000.001.00-------------------------------
................................................................................................................................................................................................................AACCTCCGCCTCTGGGTTCAC..................... 211.000.00--1.00-----------------------------
.....................................................................................................................................................................................................................CCGCCTCTGGGTTCAAGCCA................. 201.000.00-------------------------------1.00
..................................................................................................................................................................AGCCTGGACAACACA......................................................................... 1501.001.00-------------------1.00------------
....................................................................................................................................................AGATGGAGTCTTGCTGTGTTTAGA.............................................................................. 241.000.001.00-------------------------------
....................................................................................................................................................................TGTTGTCCAGGCTGGAGTA................................................................... 191.000.00---------------1.00----------------
..............................................................................................................................................................................................................GCAACCTCCGCCTCTGTGG......................... 191.000.00------1.00-------------------------
..........................................................................................................................................................................................................................TCTGGGTTCAAGCGATTCTCCTTA........ 241.000.00-----------------1.00--------------
......................................................................................................................................................................................................AGAGGCGGAGGTTGCAGTGAGCC............................. 2301.001.00--------1.00-----------------------
....................................................................................................................................................AGATGGAGTCTTGCTGTGTTGTAT.............................................................................. 241.000.00-----1.00--------------------------
.....................................................................................................................................................GATGGAGTCTTGCTGTGTCCAC............................................................................... 221.000.00--1.00-----------------------------
.....................................................................................................................................................GATGGAGTCTTGCTGTGTTCGA............................................................................... 221.000.00---------------------1.00----------
.....................................................................................................................................................GATGGAGTCTTGCTGTGTTGCG............................................................................... 221.000.001.00-------------------------------
.................................................................................................................................................TTGAGATGGAGTCTTGCCAAG.................................................................................... 211.000.00------------------------------1.00-
.............................................................................................................................................................................GGCTGGAGTACAGTGGTGCGAAGGC.................................................... 251.000.00--1.00-----------------------------
.........................................................................................................................................................GAGTCTTGCTGTGTTGTCCAGGCTTGTT..................................................................... 281.000.00-------------------------1.00------