| (1) BREAST | (9) CELL-LINE | (3) CERVIX | (1) HELA | (1) LIVER | (1) OTHER | (1) RRP40.ip | (4) SKIN |
| AATGAATTGGCTTTAATGACATTATGAGAATCATTATGTTTAATTTATCGCTAATTAATGCTGACAGGTTTCATATGCCTTGGGTTGCTTTCATGTGAGTGTTACGTGCTGTTTTTTTTTTTCTTTTTAATTGTGTGTACACATCCCTCCTCATTCATTCATTTTGATTCTGACGATTTACACAGCTTTCTGTCTTCTAGGTTCCCTCCCCATATGGTCCCACCACATCATACGCTACACACGACGGGCA ...................................................................................................................................((((....))))....((.(((.(((.......)))...))).)).......................................................................... ..........................................................................................................107.......................................................................181................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | SRR343335 | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR191451(GSM715561) 177genomic small RNA (size selected RNA from . (breast) | SRR189784 | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR330907(SRX091745) tissue: normal skindisease state: normal. (skin) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | GSM532880(GSM532880) G659T. (cervix) | DRR001484(DRX001038) "Hela long nuclear cell fraction, control". (hela) | SRR444049(SRX128897) Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin) | SRR189782 | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR324841(SRX087285) "Total RNA, no rRNA depletion". (cell line) | GSM532886(GSM532886) G850T. (cervix) | SRR040035(GSM532920) G001T. (cervix) | SRR330887(SRX091725) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................TTTTTTTTTTTCTTTTTAATTCTG................................................................................................................... | 24 | 23.00 | 0.00 | 14.00 | 7.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................TTTTTTTTTTCTTTTTAATTCTG................................................................................................................... | 23 | 18.00 | 0.00 | 3.00 | 9.00 | 2.00 | - | - | - | - | - | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................TCCCACCACATCATACGCTACACACG....... | 26 | 1 | 11.00 | 11.00 | - | - | - | - | 5.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TCCCACCACATCATACGCTACACAC........ | 25 | 1 | 4.00 | 4.00 | - | - | - | - | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................CATTATGTTTAATTTATCGCT...................................................................................................................................................................................................... | 21 | 1 | 4.00 | 4.00 | - | - | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................ATTTTGATTCTGACGTT......................................................................... | 17 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | |
| ...............................................................................................................TTTTTTTTTTTCTTTTTAATTTCAG.................................................................................................................. | 25 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................CATTTTGATTCTGACGT.......................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................TTCATTTTGATTCTGAGGTT......................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ................................................................................................................TTTTTTTTTTCTTTTTAATATCC................................................................................................................... | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................CTGTTTTTTTTTTTCTTTTAG......................................................................................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................TGTTTTTTTTTTTCTTTTTAGC....................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................GTTTTTTTTTTTCTTTTTAAGCGC.................................................................................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ACGTGCTGTTTTTTTTTTTTTTT............................................................................................................................ | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................TTTTTTTTTTTCTTTTTAATTCT.................................................................................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................TTTACACAGCTTTCTTAAT....................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................TGTTTTTTTTTTTCTTTTTGGGC...................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ACGTGCTGTTTTTTTTTTTTCTG............................................................................................................................ | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................GTCCCACCACATCATACGCTACA........... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................TGTTTTTTTTTTTCTTTGACG........................................................................................................................ | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................TGTTTTTTTTTTTCTTTTTAAGCG..................................................................................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................TTCATTTTGATTCTGAGG........................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ................................................................................................................TTTTTTTTTTCTTTTTAATTGCTG.................................................................................................................. | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................GCTGTTTTTTTTTTTCTTTTTTGG....................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................GATTCTGACGATTTACACAGCT............................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................TTTTTTTTTTCTTTTTAATCCTA................................................................................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................TGCTGTTTTTTTTTTTCTTTTTTCCT...................................................................................................................... | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................ACGTGCTGTTTTTTTTTCCCC.............................................................................................................................. | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................TGCTGTTTTTTTTTTTCTTAATG......................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................TGAGTGTTACGTGCTGCTG........................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................GTTTTTTTTTTTCTTTTTAATTCTG................................................................................................................... | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................GGTTTCATATGCCTTGGGTTGCTTTC.............................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................TGTTTTTTTTTTTCTTTTAAGC....................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................TTTTTTTTTCTTTTTAATTCCG................................................................................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................TTTTTTTTCTTTTTAATTCCG................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................TTTTTTTTTCTTTTTAATTCCAG.................................................................................................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................TGTTACGTGCTGTTTTTTTTTTTCTTTTTAA........................................................................................................................ | 31 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................GACGATTTACACAGCAAT............................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................TCATTTTGATTCTGAGGTT......................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................TGAGTGTTACGTGCTGTTTTTTTTTTCTCT............................................................................................................................. | 30 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................TTTTTTTTTTTCTTTTTAATACT.................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................TTTTTTTTTTTCTTTTTAATTTCGG.................................................................................................................. | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................TTTTTTTTTTTCTTTTTAATTTCA................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................TTTTTTTTTTTCTTTTTAATTG..................................................................................................................... | 22 | 4 | 0.50 | 0.50 | - | 0.25 | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AATGAATTGGCTTTAATGACATTATGAGAATCATTATGTTTAATTTATCGCTAATTAATGCTGACAGGTTTCATATGCCTTGGGTTGCTTTCATGTGAGTGTTACGTGCTGTTTTTTTTTTTCTTTTTAATTGTGTGTACACATCCCTCCTCATTCATTCATTTTGATTCTGACGATTTACACAGCTTTCTGTCTTCTAGGTTCCCTCCCCATATGGTCCCACCACATCATACGCTACACACGACGGGCA ...................................................................................................................................((((....))))....((.(((.(((.......)))...))).)).......................................................................... ..........................................................................................................107.......................................................................181................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | SRR343335 | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR191451(GSM715561) 177genomic small RNA (size selected RNA from . (breast) | SRR189784 | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR330907(SRX091745) tissue: normal skindisease state: normal. (skin) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | GSM532880(GSM532880) G659T. (cervix) | DRR001484(DRX001038) "Hela long nuclear cell fraction, control". (hela) | SRR444049(SRX128897) Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin) | SRR189782 | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR324841(SRX087285) "Total RNA, no rRNA depletion". (cell line) | GSM532886(GSM532886) G850T. (cervix) | SRR040035(GSM532920) G001T. (cervix) | SRR330887(SRX091725) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................CCCTCCTCATTCATTCGGAA...................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| .................................................................................................AGTGTTACGTGCTGTTTG....................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..............................................................................................................GTTTTTTTTTTTCTTTGATG........................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ........................................................................................................................................................................................CTAGAAGACAGAAAGC.................................................. | 16 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 |