ID: uc001kub.2_intron_8_0_chr10_103590925_r.3p
GENE: (1)
chr10:103590875-103591124-


(1)
AGO2.ip
(2)
B-CELL
(4)
BRAIN
(3)
BREAST
(10)
CELL-LINE
(8)
HEART
(2)
LIVER
(1)
OTHER
(6)
SKIN
(1)
XRN.ip

Sense strand
AAGTGCCTGAGCCTCACCTCTATGGACTCACTGGGCTCCCCTAACCCGATTCCAACCACCCTTGCCATTCCTTTCCTCCCCTTAATTCCTCCCCCAGCCCGGTCCCCAGATGGGGTTGATTTGTGACTGGCGGGGAGGGGACAGGGAACAGAGGGACAATGGGAGTTAATGTGCCTTCCTGGGGTCTTCTCTCTTCCCAGGCCACCCTCCAGGGCCCACTAAAAAAGCGCTGAAGCAGCGATTCCTCAAG
..............................................................................................................................((((.((((((..(((.((((....(((.(((.((.....)).))).)))))))...)))..))))))..))))..................................................
.................................................................................................................114...................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR343336SRR189782SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189786GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................ATTTGTGACTGGCGGGCTAG................................................................................................................205.000.00-1.00--4.00-------------------------------------
..............................................................................................................................................AGGGAACAGAGGGACAATGG........................................................................................2014.004.001.00--1.00---------------1.00-------------1.00--------
.......................................................................................................................TTTGTGACTGGCGGGCTT.................................................................................................................183.000.00-1.00-----------2.00----------------------------
..............................................................................................................................................AGGGAACAGAGGGACAATGGGA......................................................................................2213.003.001.00-------------1.00-------------------------1.00-
..............................................................................................................................................AGGGAACAGAGGGACAATGGG.......................................................................................2113.003.001.00------1.00---------1.00------------------------
.......................................................................................................................TTTGTGACTGGCGGGCTA.................................................................................................................183.000.00-1.00---1.00----------1.00-------------------------
......................................................................................................................ATTTGTGACTGGCGGGCTA.................................................................................................................193.000.00-----2.00----------1.00-------------------------
..................................................................................................................................................................................CTGGGGTCTTCTCTCTTCCCAGT.................................................232.000.00------------------------------1.00---1.00-------
.............................................................................................................................................................................................................CCTCCAGGGCCCACTAAAAAAGC......................2312.002.00---2.00--------------------------------------
........................................................................................................................................GGGGACAGGGAACAGAGGGACAATGG........................................................................................2612.002.00----------2.00-------------------------------
..............................................................................................................................................AGGGAACAGAGGGACAATG.........................................................................................1912.002.00-----------------1.00-----------------1.00------
......................................................................................................................ATTTGTGACTGGCGGGCAA.................................................................................................................191.000.00-----------------------------1.00------------
.......................................................................................................................TTTGTGACTGGCGGGGCAGC...............................................................................................................201.000.00-1.00----------------------------------------
............................................................................................................................................ACAGGGAACAGAGGGACAATG.........................................................................................2111.001.00---------1.00--------------------------------
.......................................................................................................................................AGGGGACAGGGAACAGCCAA...............................................................................................201.000.00------------------------------------1.00-----
............................................................................................................................................ACAGGGAACAGAGGGACAATGGA.......................................................................................2311.001.00-------1.00----------------------------------
.......................................................................................................................TTTGTGACTGGCGGGC...................................................................................................................161.000.00-----------1.00------------------------------
.......................................................................................................................................AGGGGACAGGGAACAGCCA................................................................................................191.000.00---1.00--------------------------------------
..................................................................................................................................................................................CTGGGGTCTTCTCTCTTCTAA...................................................211.000.00---------------------1.00--------------------
.......................................................................................................................................AGGGGACAGGGAACAGCC.................................................................................................181.000.00---------------------------1.00--------------
.......................................................................................................................TTTGTGACTGGCGGGGCC.................................................................................................................181.000.00-1.00----------------------------------------
............................................................................................................................................ACAGGGAACAGAGGGACAATGG........................................................................................2211.001.00-------1.00----------------------------------
..............................................................................................................................................AGGGAACAGAGGGACAATGGGAA.....................................................................................2311.003.00---------1.00--------------------------------
..............................................CGATTCCAACCACCCTTGCCATT.....................................................................................................................................................................................2311.001.00----------------------1.00-------------------
........................................................CACCCTTGCCATTCCTCA................................................................................................................................................................................181.000.00-----------1.00------------------------------
.......................................................................................................................TTTGTGACTGGCGGGCCAG................................................................................................................191.000.00-----1.00------------------------------------
...................................................................................................................................................................................TGGGGTCTTCTCTCTTCCCAAGA................................................231.000.00--------------------1.00---------------------
........................................................................................................CCCAGATGGGGTTGATTTGTGACTGGC.......................................................................................................................2711.001.00--------------1.00---------------------------
...................................................................................................................................................................................................................GGGCCCACTAAAAAAG.......................1611.001.001.00-----------------------------------------
....................................................................................................................................GGGAGGGGACAGGGAACTCTG.................................................................................................211.000.00---------1.00--------------------------------
.................................................................................................................................................................................................................CAGGGCCCACTAAAAAAGCGCTGAAGCAGCG..........3111.001.001.00-----------------------------------------
............................................................................................................................................................................................................................AAAAAAGCGCTGAAGTTAT...........191.000.00------------------------1.00-----------------
......................................................................................................................ATTTGTGACTGGCGGC....................................................................................................................161.000.00-------------------------------------1.00----
..............................................................................................................................................AGGGAACAGAGGGACAATGGA.......................................................................................2111.004.001.00-----------------------------------------
.......................................................................................................................TTTGTGACTGGCGGGCG..................................................................................................................171.000.00----------------------------1.00-------------

Antisense strand
AAGTGCCTGAGCCTCACCTCTATGGACTCACTGGGCTCCCCTAACCCGATTCCAACCACCCTTGCCATTCCTTTCCTCCCCTTAATTCCTCCCCCAGCCCGGTCCCCAGATGGGGTTGATTTGTGACTGGCGGGGAGGGGACAGGGAACAGAGGGACAATGGGAGTTAATGTGCCTTCCTGGGGTCTTCTCTCTTCCCAGGCCACCCTCCAGGGCCCACTAAAAAAGCGCTGAAGCAGCGATTCCTCAAG
..............................................................................................................................((((.((((((..(((.((((....(((.(((.((.....)).))).)))))))...)))..))))))..))))..................................................
.................................................................................................................114...................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR343336SRR189782SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189786GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................................................................................AGGGTGGCCTGGGAAGAGA.......................................... 1918.008.00--4.00---4.00-----------------------------------
.........................................................................................................................................................................................AGGGTGGCCTGGGAAGAGAGAAG.......................................... 2313.003.00--------3.00---------------------------------
........................................................................................................................................................................................................TTAGTGGGCCCTGGAGGGTGGC............................ 2212.002.00------------2.00-----------------------------
................................................................CCATTCCTTTCCTCCCTGTA...................................................................................................................................................................... 201.000.00-----------------------1.00------------------
........................................................................................CTCCCCCAGCCCGGTTGC................................................................................................................................................ 181.000.00---------------------------------------1.00--
........................................................................................CTCCCCCAGCCCGGTCGC................................................................................................................................................ 181.000.00---------------1.00--------------------------
....................................................................................ATTCCTCCCCCAGCCGGGT................................................................................................................................................... 191.000.00--------------------------------------1.00---
........................................................................................CTCCCCCAGCCCGGTCG................................................................................................................................................. 171.000.00---------------1.00--------------------------
.......................................................................................................................................................................................................GGCCACCCTCCAGGGGTT................................. 181.000.00------------------1.00-----------------------
..............................................................................................................................................................................................................................GAGGAATCGCTGCTTCAGCGCTTTT... 2511.001.00-------------------------1.00----------------
...............................................................................................AGCCCGGTCCCCAGAACA......................................................................................................................................... 181.000.00------------------1.00-----------------------
............................CACTGGGCTCCCCTATCTT........................................................................................................................................................................................................... 191.000.00--------------------------------1.00---------
...............................................GATTCCAACCACCCTCAA......................................................................................................................................................................................... 181.000.00--------------------------1.00---------------
..............................................................................................................................................................................................................TTTTTTAGTGGGCCCTGGAG........................ 2011.001.00-------------------------------1.00----------
..........................................................................................GGGACCGGGCTGGGGG................................................................................................................................................ 1680.120.12-----------------------------------------0.12