ID: uc001kqq.1_intron_9_0_chr10_102016234_r.5p
GENE: CWF19L1(4)
chr10:102019775-102020024-


(1)
AGO2.ip 		(2)
B-CELL 		(5)
BREAST 		(13)
CELL-LINE 		(3)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(10)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTTCCAGGATGCTGATGGATGTGAATTAGCTGAAAACATTACTTATCTGGGTAAGCTGATACTTGTTGTATTTTTTTTTTGTTTTTTGTTTTTTGTTTTTGAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGTAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTTGGATTACAGGCGTGTGTGACCATACCCGGCTAAT
............................................................(((((.....................................(((((((.....))))))).((((((.((((((((((((((.((....)))).)))))))..))))))))...)))..))))).................................................................
..........................................................59............................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189787SRR189784SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189786SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040010(GSM532895)
G529N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR189785SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		GSM532929(GSM532929)
G702N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................TGTTGTATTTTTTTTTTGTTC......................................................................................................................................................................21141.008.00--17.0019.00----2.00-------1.00-----------------1.001.00---------
...............................................................TGTTGTATTTTTTTTTTG.........................................................................................................................................................................18722.7122.71--17.14-4.43--------1.000.14------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTTCCC.....................................................................................................................................................2618.000.0013.005.00-------------------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTCTCC.....................................................................................................................................................2610.000.006.004.00-------------------------------------------
............................................................................TTTTGTTTTTTGTTTTTTGTTTCCC.....................................................................................................................................................258.000.001.007.00-------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTT.......................................................................................................................................................................2018.008.00--2.00---1.00---1.001.00---1.00---1.00------1.00------------------
...............................................................TGTTGTATTTTTTTTTTGTTT......................................................................................................................................................................2115.005.00--4.00-----1.00------------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTTTCACC...................................................................................................................................................285.000.001.004.00-------------------------------------------
..........................................................................TTTTTTGTTTTTTGTTTTTTGTTCTCT.....................................................................................................................................................274.000.003.001.00-------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTTA......................................................................................................................................................................2114.008.00--2.00--------------------------1.00-1.00-------------
.............................................................................TTTGTTTTTTGTTTTTTGTTTCCC.....................................................................................................................................................244.000.003.001.00-------------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTTTTTGTC..........................................................................................................................................................263.000.002.001.00-------------------------------------------
..........................................................................TTTTTTGTTTTTTGTTTTTTGTTTCGAG....................................................................................................................................................283.000.00-3.00-------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTCG............................................................................................................................................................253.000.002.001.00-------------------------------------------
.............................................................................TTTGTTTTTTGTTTTTTGTTCTCC.....................................................................................................................................................243.000.001.002.00-------------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTTTTTCGAG.........................................................................................................................................................272.000.002.00--------------------------------------------
.......................AATTAGCTGAAAACATTACTTATCTGGGTCG....................................................................................................................................................................................................312.000.00--2.00------------------------------------------
.......................................................................TTTTTTTTTGTTTTTTGTTTTTTGTTTTCTC....................................................................................................................................................312.000.002.00--------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTTG......................................................................................................................................................................2112.008.00--1.001.00-----------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTCGTT..........................................................................................................................................................272.000.00-2.00-------------------------------------------
............................................................................................................................................................ACTGTAACCTCCACCTCCCGGGTCCAG...................................................................272.000.002.00--------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTTGC...........................................................................................................................................................262.000.001.001.00-------------------------------------------
.................................................................................TTTTTTGTTTTTTGTTTTTGATC..................................................................................................................................................232.000.002.00--------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTC.......................................................................................................................................................................2022.001.00--2.00------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTTGTTC.........................................................................................................................................................282.000.001.001.00-------------------------------------------
.........................................................................................................................ACCCAGGCTGGAGTGCAGTGGCGCAACCG....................................................................................................292.000.001.001.00-------------------------------------------
.......................................................................TTTTTTTTTGTTTTTTGTTTTTTCTGC........................................................................................................................................................272.000.002.00--------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTCC......................................................................................................................................................................2122.001.00---2.00-----------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTTGTC..........................................................................................................................................................272.000.002.00--------------------------------------------
..........................................................................TTTTTTGTTTTTTGTTTTTTGTTCTGG.....................................................................................................................................................272.000.002.00--------------------------------------------
...............................................................TGTTGTATTTTTTTTGTG.........................................................................................................................................................................182.000.00--2.00------------------------------------------
............................................................................................................................................................ACTGTAACCTCCACCTCCCGGGGTT.....................................................................252.000.00-2.00-------------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTTTTTGCAC.........................................................................................................................................................271.000.00-----1.00---------------------------------------
.......................................................................TTTTTTTTTGTTTTTTGTTTTTTGTTCA.......................................................................................................................................................281.000.001.00--------------------------------------------
.......................................................................TTTTTTTTTGTTTTTTGTTTTTTGTTTCTG.....................................................................................................................................................301.000.00-1.00-------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTC..............................................................................................................................................................231.000.00-1.00-------------------------------------------
.............................................................................TTTGTTTTTTGTTTTTTGTTTCCCA....................................................................................................................................................251.000.00-1.00-------------------------------------------
...........................................................................................TTTGTTTTTGAGACGGAGTCCTGG.......................................................................................................................................241.000.00-1.00-------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTTCT.....................................................................................................................................................................2211.008.00---1.00-----------------------------------------
....CAGGATGCTGATGGATGTGAA.................................................................................................................................................................................................................................2111.001.00------------------1.00--------------------------
...............................................................TGTTGTATTTTTTTTTGGTC.......................................................................................................................................................................201.000.00---1.00-----------------------------------------
........................................................................TTTTTTTTGTTTTTTGTTTTTTGTTTTACG....................................................................................................................................................301.000.001.00--------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTTGCC..........................................................................................................................................................271.000.001.00--------------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTTTGGG............................................................................................................................................................241.000.001.00--------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTAT............................................................................................................................................................251.000.00-1.00-------------------------------------------
............................................................................TTTTGTTTTTTGTTTTTTGTTCTG......................................................................................................................................................241.000.001.00--------------------------------------------
.........................................................................TTTTTTTGTTTTTTGTCGGC.............................................................................................................................................................201.000.001.00--------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTATAG.............................................................................................................................................................241.000.00-1.00-------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTCGT...........................................................................................................................................................261.000.00-1.00-------------------------------------------
..................................................................................................TTGAGACGGAGTCTTGCTCTGAAA................................................................................................................................241.000.00------------1.00--------------------------------
.........................................................................TTTTTTTGTTTTTTGTTTTTTGTTTTCGGC...................................................................................................................................................301.000.001.00--------------------------------------------
........................................................................TTTTTTTTGTTTTTTGTTTTTCGA..........................................................................................................................................................241.000.00-1.00-------------------------------------------
.......................................................................................................ACGGAGTCTTGCTCTGTCACCGCGC..........................................................................................................................251.000.001.00--------------------------------------------
.......................................................................TTTTTTTTTGTTTTTTGTTTTTTGTTTCTTT....................................................................................................................................................311.000.001.00--------------------------------------------
....................................................................TATTTTTTTTTTGTTTTTTAACT...............................................................................................................................................................231.000.001.00--------------------------------------------
.........................................................................TTTTTTTGTTTTTTGTTTTTTGTTTTCACC...................................................................................................................................................301.000.001.00--------------------------------------------
....................................................................TATTTTTTTTTTGTTTTTTGTTTCGG............................................................................................................................................................261.000.001.00--------------------------------------------
.........................................................................TTTTTTTGTTTTTTGTTAGTG............................................................................................................................................................211.000.00-1.00-------------------------------------------
................................AAAACATTACTTATCTGGGTCG....................................................................................................................................................................................................221.000.00--1.00------------------------------------------
............................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCGTTT.................................................291.000.00--------------------------------1.00------------
...............................................................TGTTGTATTTTTTTTTGTTG.......................................................................................................................................................................201.000.00---1.00-----------------------------------------
...........................................................................................TTTGTTTTTGAGACGGAGTCTTGCTCTG...................................................................................................................................2801.001.00-------1.00-------------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTTTTGTTCG.................................................................................................................................................301.000.00-1.00-------------------------------------------
..............................................................................TTGTTTTTTGTTTTTTGTAGT.......................................................................................................................................................211.000.00-----1.00---------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTTTTTCTCG.........................................................................................................................................................271.000.001.00--------------------------------------------
.................GATGTGAATTAGCTGAAAACATTACTTA.............................................................................................................................................................................................................2811.001.00------------------------------------------1.00--
............................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCAG...................................................271.000.00--------------1.00------------------------------
.....AGGATGCTGATGGATGTG...................................................................................................................................................................................................................................1811.001.00-----------------------1.00---------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTCTGC...........................................................................................................................................................261.000.001.00--------------------------------------------
............................................................................TTTTGTTTTTTGTTTTTTGTTCTCC.....................................................................................................................................................251.000.001.00--------------------------------------------
.................................................................................................................................................................................GTTCAAGTGATTCTCCTGCCTAAAA................................................251.000.00---------------------------------1.00-----------
..........................................................................................TTTTGTTTTTGAGACGGAGTCCCTC.......................................................................................................................................251.000.00---1.00-----------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTCGT.....................................................................................................................................................................2221.001.00--1.00------------------------------------------
............................................................................TTTTGTTTTTTGTTTTTTGTTCTAC.....................................................................................................................................................251.000.001.00--------------------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTCTC......................................................................................................................................................251.000.001.00--------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTAT......................................................................................................................................................................2121.001.00---1.00-----------------------------------------
............................................................................TTTTGTTTTTTGTTTTTTGTTTCGCC....................................................................................................................................................261.000.00-1.00-------------------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTTCG......................................................................................................................................................251.000.00-----1.00---------------------------------------
........................................................................TTTTTTTTGTTTTTTGTTTTTTGTTTTCAC....................................................................................................................................................301.000.001.00--------------------------------------------
.............GATGGATGTGAATTAGCTGAAAACATTACTT..............................................................................................................................................................................................................3111.001.00---------------------------------------1.00-----
.........................................................................TTTTTTTGTTTTTTGTTTTTTGTTTTCGC....................................................................................................................................................291.000.001.00--------------------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTTTTGTTTC.................................................................................................................................................301.000.001.00--------------------------------------------
...............................................................TGTTGTATTTTTTTTTGTG........................................................................................................................................................................191.000.00----1.00----------------------------------------
................................................................................................................TGCTCTGTCACCCAGGCTGGAGTGCAGGGGA...........................................................................................................311.000.001.00--------------------------------------------
.......................................................................TTTTTTTTTGTTTTTTGTTTTTTGTTTCCGT....................................................................................................................................................311.000.00-1.00-------------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTTTTGGTC..........................................................................................................................................................261.000.001.00--------------------------------------------
....CAGGATGCTGATGGATGT....................................................................................................................................................................................................................................1811.001.00------------------------------1.00--------------
.........................................................................TTTTTTTGTTTTTTGTTTTTTGTTTGAGG....................................................................................................................................................291.000.001.00--------------------------------------------
..........................................................................TTTTTTGTTTTTTGTTTTTTGTTATC......................................................................................................................................................261.000.001.00--------------------------------------------
........................................................................TTTTTTTTGTTTTTTGTTTTTTGTTTCG......................................................................................................................................................281.000.001.00--------------------------------------------
.....................................................................................................AGACGGAGTCTTGCTCTGTCACCCAGGCTAAAA....................................................................................................................331.000.00-1.00-------------------------------------------
....................................................................................................................................................................................CAAGTGATTCTCCTGCCTAAAA................................................221.000.00-----------1.00---------------------------------
...............................................................TGTTGTATTTTTTTTCG..........................................................................................................................................................................171.000.00----1.00----------------------------------------
.............................................................................TTTGTTTTTTGTTTTTTGTTCCCC.....................................................................................................................................................241.000.00-1.00-------------------------------------------
.........................................................................TTTTTTTGTTTTTTGTTTTTTGTTTCGTG....................................................................................................................................................291.000.001.00--------------------------------------------
........................................................................................................................CACCCAGGCTGGAGTGCAGTGGCGCAACCG....................................................................................................301.000.001.00--------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTGTGG..........................................................................................................................................................271.000.001.00--------------------------------------------
.......................................................................................................................TCACCCAGGCTGGAGTGCAGTGGCGCACCC.....................................................................................................301.000.001.00--------------------------------------------
...............................................................TGTTGTATTTTTTTTTTATTC......................................................................................................................................................................211.000.00----------------------------1.00----------------
..............................................................................TTGTTTTTTGTTTTTTGTTTCTGG....................................................................................................................................................241.000.001.00--------------------------------------------
...........................................................................................................................................TGGCGCAATCTTGGCTCACTGTATT......................................................................................251.000.00----------------------------------------1.00----
...............................................................TGTTGTATTTTTTTTGCTC........................................................................................................................................................................191.000.00--------1.00------------------------------------
...CCAGGATGCTGATGGATT.....................................................................................................................................................................................................................................181.000.00---------------------------1.00-----------------
.......................................................................TTTTTTTTTGTTTTTTGTTTTTTGTTTCGCT....................................................................................................................................................311.000.00-1.00-------------------------------------------
..............................................................................TTGTTTTTTGTTTTTTGTTCGG......................................................................................................................................................221.000.00-1.00-------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTCTCA....................................................................................................................................................................2321.001.00--1.00------------------------------------------
.....................................................................................................................................................TTGGCTCACTGTAACCTAAGA................................................................................211.000.00-----------------------------------------1.00---
.............................................................................TTTGTTTTTTGTTTTTTGTTTCGTC....................................................................................................................................................251.000.001.00--------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTGTTC..........................................................................................................................................................271.000.001.00--------------------------------------------
..........................................................................TTTTTTGTTTTTTGTTTTTTGTTCCCT.....................................................................................................................................................271.000.001.00--------------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTTTTTCGA..........................................................................................................................................................261.000.001.00--------------------------------------------
....................................................................TATTTTTTTTTTGTTTTTTGTTTCTG............................................................................................................................................................261.000.001.00--------------------------------------------
...............................................................TGTTGTATTTTTTTTTTATGA......................................................................................................................................................................211.000.00--1.00------------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTTTGGGG...........................................................................................................................................................251.000.00-1.00-------------------------------------------
.............................................................................TTTGTTTTTTGTTTTTTGTTTCG......................................................................................................................................................231.000.001.00--------------------------------------------
..............................................................................................................................................................TGTAACCTCCACCTCCC...........................................................................1701.001.00------1.00--------------------------------------
.......................................................................TTTTTTTTTGTTTTTTGTTTTTTGTTTTCGT....................................................................................................................................................311.000.001.00--------------------------------------------
.......................................................................TTTTTTTTTGTTTTTTGTTTTTACC..........................................................................................................................................................251.000.001.00--------------------------------------------
...........................................................................................TTTGTTTTTGAGACGGAGTCTTGCACCG...................................................................................................................................281.000.00-1.00-------------------------------------------
.......................................................................TTTTTTTTTGTTTTTTGTTTTTCCTG.........................................................................................................................................................261.000.001.00--------------------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTTCAC.....................................................................................................................................................261.000.00-1.00-------------------------------------------
.............................................................................TTTGTTTTTTGTTTTTTGTTTTTGAGACGGT..............................................................................................................................................311.000.001.00--------------------------------------------
......................................................................................................................................................TGGCTCACTGTAACCTCCACCTCCCGGTCTC.....................................................................311.000.001.00--------------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTTTTGTC...........................................................................................................................................................251.000.00-1.00-------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTGTTA....................................................................................................................................................................2321.001.00--1.00------------------------------------------
........................................................................TTTTTTTTGTTTTTTGTTTTTCCTC.........................................................................................................................................................251.000.001.00--------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTCTGG..........................................................................................................................................................271.000.001.00--------------------------------------------
............................................................................TTTTGTTTTTTGTTTTTTGTTTCCCA....................................................................................................................................................261.000.00-1.00-------------------------------------------
........................................................................TTTTTTTTGTTTTTTGTTTTTTGCCC........................................................................................................................................................261.000.00-1.00-------------------------------------------
.............GATGGATGTGAATTAGCTGAAA.......................................................................................................................................................................................................................2211.001.00---------1.00-----------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTTCCCA....................................................................................................................................................271.000.001.00--------------------------------------------
.............GATGGATGTGAATTAGCTGAAAACA....................................................................................................................................................................................................................2511.001.00--------------------------------------1.00------
..........................................................................TTTTTTGTTTTTTGTTTTTTGTTCTC......................................................................................................................................................261.000.001.00--------------------------------------------
.......................................................................TTTTTTTTTGTTTTTTGTTATTC............................................................................................................................................................231.000.00-----1.00---------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTG.......................................................................................................................................................................2021.001.00--1.00------------------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTATC......................................................................................................................................................251.000.001.00--------------------------------------------
...................................ACATTACTTATCTGGGT......................................................................................................................................................................................................1711.001.00---------1.00-----------------------------------
.........................................................................TTTTTTTGTTTTTTGTTTTTTGTTCTTC.....................................................................................................................................................281.000.001.00--------------------------------------------
..........................................................................................................................................................TCACTGTAACCTCCACCTCCCGCC........................................................................241.000.00-1.00-------------------------------------------
.......................................................................TTTTTTTTTGTTTTTTGTTTTTTGTTTCGGT....................................................................................................................................................311.000.00-1.00-------------------------------------------
..........................................................................TTTTTTGTTTTTTGTTTTTTGTTCTGC.....................................................................................................................................................271.000.001.00--------------------------------------------
........................................................................................................................................................GCTCACTGTAACCTCCACCTCCCGGCC.......................................................................271.000.00-------------------------------------1.00-------
..........................................................................................................................................................TCACTGTAACCTCCACCTCCCGGGCC......................................................................261.000.00-1.00-------------------------------------------
........................................................................TTTTTTTTGTTTTTTGTTTTTTGTTTTCACC...................................................................................................................................................311.000.001.00--------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGTGT......................................................................................................................................................................2121.001.00--1.00------------------------------------------
.......................................................................................................ACGGAGTCTTGCTCTGTCACCCAGGCCGC......................................................................................................................291.000.001.00--------------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTTTTTTCTTG........................................................................................................................................................281.000.001.00--------------------------------------------
........................................................................................................CGGAGTCTTGCTCTGTCACCCAGGCCGC......................................................................................................................281.000.00-1.00-------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGGC................................................................................................................................................................211.000.001.00--------------------------------------------
........................................................................TTTTTTTTGTTTTTTGTTTTTTGTTCTG......................................................................................................................................................281.000.00-----1.00---------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTTTTTGTCT.........................................................................................................................................................271.000.001.00--------------------------------------------
.................................................................................TTTTTTGTTTTTTGTTTTTGGTTC.................................................................................................................................................241.000.001.00--------------------------------------------
......................................................................TTTTTTTTTTGTTTTTTGTAGTG.............................................................................................................................................................231.000.00-1.00-------------------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTTTCGAG...................................................................................................................................................281.000.00-1.00-------------------------------------------
........................................................................TTTTTTTTGTTTTTTGTTTTTCCGG.........................................................................................................................................................251.000.001.00--------------------------------------------
........................................................................TTTTTTTTGTTTTTTGTTTTTTGTTTCCC.....................................................................................................................................................291.000.001.00--------------------------------------------
.......................................................................................................................TCACCCAGGCTGGAGTGCAGTGGCGCAACCG....................................................................................................311.000.001.00--------------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTTTC...........................................................................................................................................................261.000.001.00--------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGT........................................................................................................................................................................1921.001.00--0.50----------0.50-------------------------------
..........................................................................TTTTTTGTTTTTTGTTTTTTGTTTCCC.....................................................................................................................................................271.000.00-1.00-------------------------------------------
...............................................................TGTTGTATTTTTTTTTGTCC.......................................................................................................................................................................201.000.00---1.00-----------------------------------------
.............GATGGATGTGAATTAGCTGAAAACATTACTTATCT..........................................................................................................................................................................................................3511.001.00----------1.00----------------------------------
............................................................................................TTGTTTTTGAGACGGAGTCTTGGCC.....................................................................................................................................251.000.00-1.00-------------------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTCTAC.....................................................................................................................................................261.000.00-1.00-------------------------------------------
..............................................................................TTGTTTTTTGTTTTTTGTTTCGAG....................................................................................................................................................241.000.001.00--------------------------------------------
.........................................................................................TTTTTGTTTTTGAGACGGATCCC..........................................................................................................................................231.000.00-1.00-------------------------------------------
.............................................................................................TGTTTTTGAGACGGAGAGGC.........................................................................................................................................201.000.00-1.00-------------------------------------------
...........................................................................TTTTTGTTTTTTGTTTTTTGTTTTCGC....................................................................................................................................................271.000.001.00--------------------------------------------
.........TGCTGATGGATGTGAAT................................................................................................................................................................................................................................1720.500.50-------------------------------------------0.50-
..............................................................TTGTTGTATTTTTTTTTTG.........................................................................................................................................................................1950.400.40--0.20-0.20----------------------------------------
...............TGGATGTGAATTAGCT...........................................................................................................................................................................................................................1630.330.33--------------------------------------------0.33
...............................................................TGTTGTATTTTTTTTTTGGTTT.....................................................................................................................................................................2270.2922.71--0.29------------------------------------------
...............................................................TGTTGTATTTTTTTTTTGGTTC.....................................................................................................................................................................2270.1422.71---0.14-----------------------------------------
...............................................................TGTTGTATTTTTTTTTTGGAG......................................................................................................................................................................2170.1422.71-0.14-------------------------------------------

Antisense strand
TTTCCAGGATGCTGATGGATGTGAATTAGCTGAAAACATTACTTATCTGGGTAAGCTGATACTTGTTGTATTTTTTTTTTGTTTTTTGTTTTTTGTTTTTGAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGTAACCTCCACCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTTGGATTACAGGCGTGTGTGACCATACCCGGCTAAT
............................................................(((((.....................................(((((((.....))))))).((((((.((((((((((((((.((....)))).)))))))..))))))))...)))..))))).................................................................
..........................................................59............................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189787SRR189784SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189786SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040010(GSM532895)
G529N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR189785SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		GSM532929(GSM532929)
G702N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................GGCTGGAGTGCAGTGGCGCAATGAGC.................................................................................................. 264.000.002.002.00-------------------------------------------
..............................................................................................................................GGCTGGAGTGCAGTGGCGCAATGTGC.................................................................................................. 262.000.002.00--------------------------------------------
..................................................................................................................................................................ACCTCCACCTCCCGGAAG...................................................................... 182.000.00---------1.00-------1.00---------------------------
..................................................................................................................................................................ACCTCCACCTCCCGGATAA..................................................................... 191.000.00-------------------------1.00-------------------
.........................................................................................................................................................CTCACTGTAACCTCCACCTCCCGGGTTAAG................................................................... 301.000.00-1.00-------------------------------------------
......................................................................................................GACGGAGTCTTGCTCTGTCACCCAGGCTGAGG.................................................................................................................... 321.000.001.00--------------------------------------------
.........................................................................................................................................................................................................................................GACCATACCCGGCTAGCG 181.000.00---------------------1.00-----------------------
........................................................................................................................................................................ACCTCCCGGGTTCAAGTGATCGG........................................................... 231.000.00-1.00-------------------------------------------
..............................................................................................................................GGCTGGAGTGCAGTGGCGCAATGAAC.................................................................................................. 261.000.001.00--------------------------------------------
..............................................................................................................................GGCTGGAGTGCAGTGGCGCAATCTTGGGT............................................................................................... 291.000.001.00--------------------------------------------
.................................................................................................................................................................AACCTCCACCTCCCGGGTC...................................................................... 191.000.00------------------------1.00--------------------
.........................................................................................................................................................................CCTCCCGGGTTCAAGTGATTCTCCTGGGAC................................................... 301.000.00----------------------1.00----------------------
.................................................................................................................................................................GGAGAATCACTTGAACCCGGGAGGTGGAGGTT......................................................... 3201.001.00------1.00--------------------------------------
.....................................................................ATTTTTTTTTTGTTTTTTGTTTTTCAA.......................................................................................................................................................... 271.000.00--------------------1.00------------------------
..................................................................................................................................................ATCTTGGCTCACTGTAAG...................................................................................... 181.000.00-------1.00-------------------------------------
.....................................................................................................................................................................GCAGGAGAATCACTTGAACCCGGGAGGTGGA...................................................... 3101.001.00------------1.00--------------------------------
..................................................................................................................................................................ACCTCCACCTCCCGGGTTCAAGTCGCC............................................................. 271.000.00-1.00-------------------------------------------
.............................................................................................................................AGGCTGGAGTGCAGTGGCGCAATCTCCGC................................................................................................ 291.000.00-1.00-------------------------------------------
............................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTT....................................................... 231.000.00-------1.00-------------------------------------
..............................................................................................................................GGCTGGAGTGCAGTGGCGCAAGAGC................................................................................................... 251.000.00-1.00-------------------------------------------
............................................................................................................................................................ACTGTAACCTCCACCTCCCGATTT...................................................................... 241.000.00------------------------------------1.00--------
..............................................................................................................................GGCTGGAGTGCAGTGGCGCAATGGTC.................................................................................................. 261.000.001.00--------------------------------------------
..............................................................................................................................GGCTGGAGTGCAGTGGCGCAATGGAC.................................................................................................. 261.000.001.00--------------------------------------------
..................................................................................................................................................................AGGAGAATCACTTGAACCCGGGAGGTGGAGGT........................................................ 3201.001.00-------1.00-------------------------------------
.........................................................................................................................................................................CCTCCCGGGTTCAAGTGATTCTCCA........................................................ 251.000.00------1.00--------------------------------------