ID: uc001kqq.1_intron_1_0_chr10_101995522_r.5p
GENE: CWF19L1(12)
chr10:101996407-101996656-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(6)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(40)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(5)
HELA 		(4)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGCAGCAGATAGAGCTGTTGGAAATCCCAGAGCACTCTGACATCAAGCAGGTGAAACAGGGGATGGTGATATTCAGGGAAGAGTAAATATCTGTTTTTTTTGTTGTTGTTTGTTGTTTGTTTGTTTGTTTGAGACAGAGTCTTGCTCTGTTGCCTAGGTTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCGCCTTCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGAC
....................................................................................................................................(((((((.....))))))).((......))........................................................................................
....................................................................................................101............................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189786DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR189787GSM956925PAZD5TAX577740(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGAAA..........................................................................................24015.002.00-----6.00-6.001.00------------------------------------------1.00---------------1.00-----------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGAT........................................................................21013.0013.00---4.003.00-2.00--4.00---------------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGAATC.........................................................................................2608.002.00--8.00----------------------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGGATC.........................................................................................267.000.00--7.00----------------------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTATAA...........................................................................................247.000.00--------1.00-----------2.00---------1.00-----------1.00-------------------------------1.00---------------1.00
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGATC.......................................................................2207.007.00---2.003.00----1.00--------------------------------------------------------------1.00------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGA.........................................................................2007.007.00---4.00--2.00---------1.00--------------------------------------------------------------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGAAG..........................................................................................2407.002.00-------------2.00-1.00--------1.00--------2.00----------------------------------------------------1.00----
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGGAAA.........................................................................................255.000.00-------5.00-----------------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGTAA..........................................................................................2504.002.00--------1.00-2.00---------1.00----------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGAA...........................................................................................2404.002.00--------2.00-------------------------------1.00----------------------------------------------1.00---
..................TGGAAATCCCAGAGCACTCTGACACC..............................................................................................................................................................................................................263.000.00-3.00-----------------------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTATT............................................................................................233.000.00--------1.00----1.00---------------------------------------------------------------1.00-------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGAAAA......................................................................2303.007.00---------1.00------------------------2.00--------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGAAA..........................................................................................2503.002.00-----2.00------------------------1.00------------------------------------------------------------
...........................................................................................................................................................AGGTTGGAGTGCAGTGGCATGAAA.......................................................................2403.002.00---------------------------------------1.00------------------1.00------------1.00-------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGGTAT.........................................................................................253.000.00--------2.00-1.00--------------------------------------------------------------------------------
..........................................................................................................TGTTTGTTGTTTGTTTGTTTGTTTAGTT....................................................................................................................283.000.002.001.00-----------------------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTATAGT..........................................................................................252.000.00-----------------2.00-------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTATA............................................................................................232.000.00----------2.00--------------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGAC........................................................................2102.007.00----1.00-1.00------------------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAG.............................................................................................2202.002.00------1.00--------------------------------------------------------1.00---------------------------
.........................................................................................................TTGTTTGTTGTTTGTTTGTTTCCGG........................................................................................................................252.000.002.00------------------------------------------------------------------------------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGAAGA.........................................................................................2502.002.00-----2.00-------------------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGATAAA.....................................................................2402.0013.00---1.00-----------------------1.00---------------------------------------------------------------
........................................................................................................................................................................................................................ATTCTCCTGCCTCAGCCTCCCCACAGG.......272.000.002.00------------------------------------------------------------------------------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAG.............................................................................................2102.002.00----------------2.00--------------------------------------------------------------------------
...........................................................................................................................................................AGGTTGGAGTGCAGTGGCATGA.........................................................................2202.002.00----1.00----------------------------------------------------------------1.00---------------------
........................................................................................ATCTGTTTTTTTTGTTGTTGCTGT..........................................................................................................................................242.000.002.00------------------------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGTTCT.........................................................................................2602.002.00------------2.00------------------------------------------------------------------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGGTTATT.......................................................................................272.000.00---------------2.00---------------------------------------------------------------------------
.........................................................................................................................................AGTCTTGCTCTGTTGCCTCTG............................................................................................212.000.00-------------------------1.00------------------------------------------1.00----------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGAAT..........................................................................................2402.002.00--------1.00----------1.00-----------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGAAT..........................................................................................2502.002.00--------------------------2.00----------------------------------------------------------------
................................CACTCTGACATCAAGCAG........................................................................................................................................................................................................1812.002.00------------------------------------------------------------1.00-----1.00------------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGGTAA.........................................................................................252.000.00----------2.00--------------------------------------------------------------------------------
.....................................................................................................................................................................................GGCTCACTGCAACCTCCGCCTATA.............................................242.000.00----------------------2.00--------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAAA............................................................................................232.000.00--------1.00-----------------------------------------1.00----------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAAGA...........................................................................................242.000.00-----------------------------------2.00-------------------------------------------------------
...................................................................................................................................................................................TTGGCTCACTGCAACCTCCGCCTTGGGG...........................................281.000.001.00------------------------------------------------------------------------------------------
................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCGGAG.............................................291.000.001.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................TTGGCTCACTGCAACCTCCGCCTTCCGGC..........................................291.000.00-1.00-----------------------------------------------------------------------------------------
.......GATAGAGCTGTTGGAAATCCCAGAGC.........................................................................................................................................................................................................................2611.001.00----------------------------------------------------------------------1.00--------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGAGA..........................................................................................2501.002.00-----------------------------------------------------------1.00-------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGTTGT.........................................................................................2601.002.00-----------------------------------------------------1.00-------------------------------------
.........................................................................................................TTGTTTGTTGTTTGTTTGTTTGATG........................................................................................................................251.000.001.00------------------------------------------------------------------------------------------
.................................................................................................................................................................................TCTTGGCTCACTGCAACCTCCGCCGGGT.............................................281.000.00-1.00-----------------------------------------------------------------------------------------
....................................................................................................TGTTGTTGTTTGTTGTTATG..................................................................................................................................201.000.00------------------------------------------------1.00------------------------------------------
..............................................................................................................................................................TTGGAGTGCAGTGGCATGAAAAA.....................................................................231.000.00-------------1.00-----------------------------------------------------------------------------
..........................................................................................................................................................TAGGTTGGAGTGCAGTGATA............................................................................201.000.00----------------------1.00--------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATTAAA.......................................................................221.000.00----------------------------------------------1.00--------------------------------------------
................GTTGGAAATCCCAGAGCACTCTGAC.................................................................................................................................................................................................................2511.001.00----------------------------------------------------------------------------1.00--------------
.......GATAGAGCTGTTGGAAATCCC..............................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------------------------1.00-----------
....................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCTTCCGGGAT........................................301.000.001.00------------------------------------------------------------------------------------------
............................................................................................................TTTGTTGTTTGTTTGTTTGTTTCTTA....................................................................................................................261.000.00-1.00-----------------------------------------------------------------------------------------
......................................................................................................TTGTTGTTTGTTGTTTGTTTGTTTTCC.........................................................................................................................271.000.00-1.00-----------------------------------------------------------------------------------------
......................................................................................................................................CAGAGTCTTGCTCTGTTGCCTATTGC..........................................................................................261.000.00------------1.00------------------------------------------------------------------------------
..............................................................................................................................................................................TGATCTTGGCTCACTGCAACCTCCGCCTGG..............................................301.000.001.00------------------------------------------------------------------------------------------
.......................................................................................................TGTTGTTTGTTGTTTGTTTGTTTTCC.........................................................................................................................261.000.00-1.00-----------------------------------------------------------------------------------------
..........................................................................................................................................................................GGCATGATCTTGGCTCACTGCAACGTCA....................................................281.000.00------------------------------------------------------------------------------------1.00------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGGATT.........................................................................................261.000.00-----------------------------1.00-------------------------------------------------------------
..........................................................................................................................................................................................ACTGCAACCTCCGCCTTCCGGGAC........................................241.000.00-1.00-----------------------------------------------------------------------------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTATT............................................................................................221.000.00-----------------------------1.00-------------------------------------------------------------
..................................CTCTGACATCAAGCAATAG.....................................................................................................................................................................................................191.000.00----------------------------------------------------------------1.00--------------------------
...............................................................................................................................................................TGGAGTGCAGTGGCATGATCTTGGA..................................................................251.000.00------1.00------------------------------------------------------------------------------------
...........................................................................................................................................................AGGTTGGAGTGCAGTGGCATGTG........................................................................2301.001.00---------------------------------------------------------1.00---------------------------------
.........................................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCCCAGTAGCCCGG..311.000.00-1.00-----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCCCTGGC........251.000.001.00------------------------------------------------------------------------------------------
..................................................................................................TTTGTTGTTGTTTGTTGTTTGTTTGTTTTG..........................................................................................................................301.000.001.00------------------------------------------------------------------------------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGGTATCT.......................................................................................271.000.00------------1.00------------------------------------------------------------------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGGTAC.........................................................................................251.000.00------------1.00------------------------------------------------------------------------------
.......................ATCCCAGAGCACTCTGACATCAAGCAGATT.....................................................................................................................................................................................................301.000.00-----------1.00-------------------------------------------------------------------------------
..............................................................................................................................................................TTGGAGTGCAGTGGCATGAT........................................................................2001.001.00-------------------------------------------------------------------------------------1.00-----
...............................................................................................................................................................................................................GTTCAAGTGATTCTCCTGCCTAAAA..................251.000.00-------------------------------1.00-----------------------------------------------------------
..........................................................................................................................................................................GGCATGATCTTGGCTCACTGGGT.........................................................231.000.00---------------------------------------------------------------------------------1.00---------
............................................................................................................TTTGTTGTTTGTTTGTTTGTTTGACGG...................................................................................................................271.000.00-1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................CTCCTGCCTCAGCCTCCCCCCTC........231.000.00--------------1.00----------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGAT...........................................................................................2401.002.00------------------------------------------------------1.00------------------------------------
.........................................................................................................................................................CTAGGTTGGAGTGCAGTG...............................................................................1801.001.00---------------------1.00---------------------------------------------------------------------
..........................................................................................................................................................TAGGTTGGAGTGCAGTGGCTGGG.........................................................................231.000.00-----------1.00-------------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGAGAA.........................................................................................2601.002.00-------------1.00-----------------------------------------------------------------------------
....................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCTTCCGGGCC........................................301.000.001.00------------------------------------------------------------------------------------------
..............................................................................................................................................................TTGGAGTGCAGTGGCATGTTT.......................................................................211.000.00----------1.00--------------------------------------------------------------------------------
..........................................................................................................TGTTTGTTGTTTGTTTGTTTGTTCTCC.....................................................................................................................271.000.001.00------------------------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATCTT........................................................................211.000.00-------------------1.00-----------------------------------------------------------------------
......................................................................................................TTGTTGTTTGTTGTTTGTTTGTTTCC..........................................................................................................................261.000.001.00------------------------------------------------------------------------------------------
......................................................................................................................................................................................GCTCACTGCAACCTCCGCCTTCCGGGTCCAG.....................................311.000.001.00------------------------------------------------------------------------------------------
.......GATAGAGCTGTTGGAAATCCCAGAGCA........................................................................................................................................................................................................................2711.001.00-----------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGATACT.....................................................................2401.0013.00------------1.00------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCTCACTGCAACCTCCGCCGGGT.............................................251.000.00-1.00-----------------------------------------------------------------------------------------
...........................CAGAGCACTCTGACATCAAGCAG........................................................................................................................................................................................................2311.001.00-----------------------1.00-------------------------------------------------------------------
................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCTAGGT............................................301.000.00-1.00-----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TTCCGGGTTCAAGTGATTCTCCGCC........................251.000.001.00------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................CAAGTGATTCTCCTGCCTAAAA..................221.000.00-------------------------------------------1.00-----------------------------------------------
................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCGCCGGCG.............................................291.000.001.00------------------------------------------------------------------------------------------
...........................................................................................................................................................AGGTTGGAGTGCAGTGGCAT...........................................................................2001.001.00----1.00--------------------------------------------------------------------------------------
........ATAGAGCTGTTGGAAATCC...............................................................................................................................................................................................................................1911.001.00---------------------------------------------1.00---------------------------------------------
...................................................................................................................................................................GTGCAGTGGCATGATCTTGGCTCAAAAA...........................................................281.000.00------------------------1.00------------------------------------------------------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGGTC..........................................................................................241.000.00-----------------1.00-------------------------------------------------------------------------
.............................................................................................................TTGTTGTTTGTTTGTTTGTTGGGC.....................................................................................................................241.000.00-1.00-----------------------------------------------------------------------------------------
...........................................................................................TGTTTTTTTTGTTGTTGTTTGTTTGC.....................................................................................................................................261.000.001.00------------------------------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAGTA...........................................................................................2401.002.00--------------------------------------------------------------------------------1.00----------
..........................................................................................................TGTTTGTTGTTTGTTTGTTTGGTCC.......................................................................................................................251.000.00-1.00-----------------------------------------------------------------------------------------
.......GATAGAGCTGTTGGAAAT.................................................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------1.00------------
...........................................................................................TGTTTTTTTTGTTGTTGTTTGTTCGTT....................................................................................................................................271.000.00-1.00-----------------------------------------------------------------------------------------
.........................................................................................................TTGTTTGTTGTTTGTTTGTTTGTTGTTG.....................................................................................................................281.000.001.00------------------------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGTAA.......................................................................2201.001.00--------------------------------------1.00----------------------------------------------------
........................................................................................................................................................................................................CTTCCGGGTTCAAGTCC.................................171.000.00--------------------------------1.00----------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATTTA........................................................................211.000.00----------1.00--------------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATG..........................................................................1901.001.00---1.00---------------------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGAA........................................................................2101.007.00---------1.00---------------------------------------------------------------------------------
............................................................................................GTTTTTTTTGTTGTTGTTTGCCT.......................................................................................................................................231.000.001.00------------------------------------------------------------------------------------------
......................................................................................................TTGTTGTTTGTTGTTTGTTTGTTTCTGG........................................................................................................................281.000.001.00------------------------------------------------------------------------------------------
......................................................................................................................................................................CAGTGGCATGATCTTGGCTGAAA.............................................................231.000.00-------------------------------------1.00-----------------------------------------------------
.............................................................................................................................................................................................................................CCTGCCTCAGCCTCCCCAGTAGCTTC...261.000.00--------------1.00----------------------------------------------------------------------------
..................................................................................................................................................................................CTTGGCTCACTGCAACCTCCGGGTC...............................................251.000.00-1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGATAAAA....................................................................2501.0013.00--------------------------------1.00----------------------------------------------------------
.........................................................................................................TTGTTTGTTGTTTGTTTGTTTCAGT........................................................................................................................251.000.00-1.00-----------------------------------------------------------------------------------------
..................TGGAAATCCCAGAGCACTCTGACATCAAGC..........................................................................................................................................................................................................3011.001.00------------------------------------1.00------------------------------------------------------
..........................................................................................................TGTTTGTTGTTTGTTTGTTTCGAA........................................................................................................................241.000.00-1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................................GCATGATCTTGGCTCACTC............................................................191.000.00-------------------------------------------------------------------------1.00-----------------
..............................................................................................................................................................................TGATCTTGGCTCACTGCAACCTCCGCCCCGG.............................................311.000.00-1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................AGGTTGGAGTGCAGTGGCATG..........................................................................2101.001.00----1.00--------------------------------------------------------------------------------------
...................................................................................................................TTTGTTTGTTTGTTTGAGACA..................................................................................................................2101.001.00-----------------------------------------------------------------1.00-------------------------
........................TCCCAGAGCACTCTGACATCAAGCAGAT......................................................................................................................................................................................................281.000.00-----------1.00-------------------------------------------------------------------------------
..........................................................................................................TGTTTGTTGTTTGTTTGTTTGTTTCCCG....................................................................................................................281.000.001.00------------------------------------------------------------------------------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGGAGTT........................................................................................261.000.00-----1.00-------------------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGATAGA.....................................................................2401.0013.00-----------------------------------------------1.00-------------------------------------------
..................TGGAAATCCCAGAGCACTCTGACAT...............................................................................................................................................................................................................2511.001.00-----------1.00-------------------------------------------------------------------------------
..........................................................................................................TGTTTGTTGTTTGTTTGTTTGTTTGTGTG...................................................................................................................291.000.001.00------------------------------------------------------------------------------------------
........................................................................................................................................................CCTAGGTTGGAGTGCAGTGG..............................................................................2001.001.00------------------1.00------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGACAGA.....................................................................2401.007.00----1.00--------------------------------------------------------------------------------------
............................................................................................................................TTGTTTGAGACAGAGTCTTGCTCTAC....................................................................................................261.000.00-1.00-----------------------------------------------------------------------------------------
.......................................................................................TATCTGTTTTTTTTGTTGTTTTGG...........................................................................................................................................241.000.001.00------------------------------------------------------------------------------------------
............................................................................................................................................................................................TGCAACCTCCGCCTTCCGGCAA........................................221.000.00-1.00-----------------------------------------------------------------------------------------
.........................................................................................................................................AGTCTTGCTCTGTTGCCTATA............................................................................................211.000.00----------------------------1.00--------------------------------------------------------------
.......................................................................................................................................................................AGTGGCATGATCTTGGCGCAG..............................................................211.000.00-1.00-----------------------------------------------------------------------------------------
.......................................................................................TATCTGTTTTTTTTGGACT................................................................................................................................................191.000.001.00------------------------------------------------------------------------------------------
....................................................................................................................................................................TGCAGTGGCATGATCTTGGAAAA...............................................................231.000.00-------------------1.00-----------------------------------------------------------------------
.......................................................................................................................................AGAGTCTTGCTCTGTTGCCTAAAT...........................................................................................241.000.00--------1.00----------------------------------------------------------------------------------
.............................GAGCACTCTGACATCAAGCAGATT.....................................................................................................................................................................................................241.000.00-----------------------1.00-------------------------------------------------------------------
....................................................................................................................................................................TGCAGTGGCATGATCTTGGAT.................................................................211.000.00----------------------------1.00--------------------------------------------------------------
........................................................................................................................................GAGTCTTGCTCTGTTGCCTAGAAAA.........................................................................................2501.002.00---------------------------1.00---------------------------------------------------------------

Antisense strand
AGCAGCAGATAGAGCTGTTGGAAATCCCAGAGCACTCTGACATCAAGCAGGTGAAACAGGGGATGGTGATATTCAGGGAAGAGTAAATATCTGTTTTTTTTGTTGTTGTTTGTTGTTTGTTTGTTTGTTTGAGACAGAGTCTTGCTCTGTTGCCTAGGTTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCGCCTTCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGAC
....................................................................................................................................(((((((.....))))))).((......))........................................................................................
....................................................................................................101............................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189786DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR189787GSM956925PAZD5TAX577740(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
....................................................................................................................................GACAGAGTCTTGCTCTGTTGCCTCTG............................................................................................ 262.000.002.00------------------------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCATGATGGGC.................................................................... 2502.000.002.00------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................AGTGATTCTCCTGCCTCAGCCTCCCCAGTCGG...... 322.000.002.00------------------------------------------------------------------------------------------
..................................................................................................................................................................................CTTGGCTCACTGCAACCTCCGCCG................................................ 242.000.002.00------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................CCTCAGCCTCCCCAGTAGCTGGGCA 251.000.00--------------1.00----------------------------------------------------------------------------
.......................................................................................................................................................................................................CCTTCCGGGTTCAAGTGATTCTCAAA......................... 261.000.00----------------------------------------------------------------------------------------1.00--
.............................................................................................................................................................................................................................CCTGCCTCAGCCTCCCCTGCA........ 211.000.00-----------1.00-------------------------------------------------------------------------------
..........................................................................................................................................................................GGCATGATCTTGGCTCACTGCAACGC...................................................... 261.000.001.00------------------------------------------------------------------------------------------
............................................................................................................................................................GGTTGGAGTGCAGTGGCATGATAGGC.................................................................... 261.000.001.00------------------------------------------------------------------------------------------
....................................................................................................................................GACAGAGTCTTGCTCTGTTGCCTCCAG........................................................................................... 271.000.001.00------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCCCAAGCC....... 261.000.00-1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................................GTTGGAGTGCAGTGGCAGGGC........................................................................ 211.000.00-1.00-----------------------------------------------------------------------------------------
............................................................................................................................................................GGTTGGAGTGCAGTGGCATGAGC....................................................................... 231.000.001.00------------------------------------------------------------------------------------------
..............................................................................................................................................................................................CAACCTCCGCCTTCCGGTGT........................................ 201.000.00--------------------------------------------1.00----------------------------------------------
...............................................................................................................................................................................................TGAACCCGGAAGGCGGAGGTT...................................... 2101.001.00------1.00------------------------------------------------------------------------------------
..........................................................................................................................................................................................CCCGGAAGGCGGAGGTTGCAGT.......................................... 2201.001.00------------------1.00------------------------------------------------------------------------
..............................................................................................................................................................................................CCCGGAAGGCGGAGGTTG.......................................... 1801.001.00------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................................CCGCCTTCCGGGTTCACGGC.................................. 201.000.00-----------------------------------------1.00-------------------------------------------------
.............................................................................................................................................................................................................................CCTGCCTCAGCCTCCCCAGTCTC...... 231.000.00-1.00-----------------------------------------------------------------------------------------
...........................................................................................................................TTTGTTTGAGACAGAGTCTTGGAAG...................................................................................................... 251.000.00--------------------------------------------------------------1.00----------------------------
............................................................................................................................................................GGTTGGAGTGCAGTGGCATGGGGC...................................................................... 241.000.001.00------------------------------------------------------------------------------------------
..................................................................................................................................................................................................CTCCGCCTTCCGGGTTCAAGACA................................. 231.000.00-------------------------------------------------------------1.00-----------------------------
.................................................................................................................TGTTTGTTTGTTTGTTTGATCAG.................................................................................................................. 231.000.00-----------------------------------------------------------------------------------------1.00-
..............................................................................................................................................................................................TGAACCCGGAAGGCGGAGGTTG...................................... 2201.001.00-------------------------------1.00-----------------------------------------------------------
.................................................................................................................................................................................................TTGAACCCGGAAGGCGGAGG..................................... 2001.001.00----1.00--------------------------------------------------------------------------------------
............................................................................................................................................................GGTTGGAGTGCAGTGGCATGATGCGC.................................................................... 261.000.001.00------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCCCAGTAGATT.... 291.000.00---------------------------------------------------------------------------1.00---------------
................................................................................................................................................................................................TTGAACCCGGAAGGCGGAGGT..................................... 2101.001.00----1.00--------------------------------------------------------------------------------------
.....................................................................................................................................................................................AAGGCGGAGGTTGCAGTGAGCC............................................... 2201.001.00------------------1.00------------------------------------------------------------------------
....................................................................................................................................................................................................TTGAACCCGGAAGGCGG..................................... 1701.001.00---------1.00---------------------------------------------------------------------------------
...............................................................................................................................................................................................ACCCGGAAGGCGGAGGTT......................................... 1801.001.00---------1.00---------------------------------------------------------------------------------
.........................................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCCCAGTAGACGA... 301.000.00-1.00-----------------------------------------------------------------------------------------
............................................................................................................................................................GGTTGGAGTGCAGTGGCATGACTGA..................................................................... 251.000.00--------------1.00----------------------------------------------------------------------------
.....................................................................................................................................................................................GAAGGCGGAGGTTGCAGTGAGCC.............................................. 2301.001.00---------------------1.00---------------------------------------------------------------------
....................................................................................................................................................................................................CCGCCTTCCGGGTTCAAGTGATCGGT............................ 261.000.00-1.00-----------------------------------------------------------------------------------------
........................................................................................................................................................................................................AGAATCACTTGAACCCGGAAG............................. 2101.001.00------1.00------------------------------------------------------------------------------------
..............................................................................................................................................................................................TTGAACCCGGAAGGCGGAGGTTG..................................... 2301.001.00------1.00------------------------------------------------------------------------------------
........................................................................................................................................................................................................................ATTCTCCTGCCTCAGCCTCCCCAGAAA....... 271.000.00----------------------------------------------------1.00--------------------------------------
...........................................................................................................................................................................................................................CTCCTGCCTCAGCCTCCCCAGTTTT...... 251.000.00--------------------------------------------------------1.00----------------------------------
...........................................................................................................................................................................................CTGCAACCTCCGCCTTCCGGGTTCCC..................................... 261.000.001.00------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................GGGGAGGCTGAGGCAGGAGAATCA............ 2401.001.00---------------------1.00---------------------------------------------------------------------
..................................................................................................................................................................................................CTCCGCCTTCCGGGTTCAAA.................................... 201.000.00----------------------------------------------------------------------------------1.00--------
..................................................................................................................................................................AGTGCAGTGGCATGATCTTGGCTT................................................................ 241.000.00-------------------------------------------------------1.00-----------------------------------
.............................................................................................................................................................................................................................CCTGCCTCAGCCTCCCCAGTTT....... 221.000.001.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................................TGAACCCGGAAGGCGGA...................................... 1701.001.00---1.00---------------------------------------------------------------------------------------
....................................................................................................................................................................................................CCGCCTTCCGGGTTCATTT................................... 191.000.00-------------------------1.00-----------------------------------------------------------------
.............................................................................................................................................................................................GCAACCTCCGCCTTCCGGGGGTG...................................... 231.000.00-----------------------------------------------------------------------------------1.00-------
......................................................................................................................................CAGAGTCTTGCTCTGTTGCCTCCC............................................................................................ 241.000.001.00------------------------------------------------------------------------------------------
....................................................................................................................................................GTTGCCTAGGTTGGAGCGGT.................................................................................. 201.000.00-------------------------------------------------1.00-----------------------------------------
........................................................................................................................................................CCAAGATCATGCCACTGCACTCCAACCTAGG................................................................... 3160.170.17-----------0.17-------------------------------------------------------------------------------