ID: uc001kqq.1_intron_1_0_chr10_101995522_r.3p
GENE: CWF19L1(12)
chr10:101995472-101995721-


(1)
AGO2.ip 		(5)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(17)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
XRN.ip

Sense strand
GACGCCACTGGGAGGATATTGTTAGTATCTTCCAGTTAGACTTTTTAAGCCCTAGTTCCACTAAGTGGCTTGGGATCTATAGCAACATACATATCTTTTTTTCTTGTGCATTTAGACTGAATTATTTGCCTAGAGATGAACTCAGATTATAGATTTTTAAAGCATTATTGGACATCCTCATACAACTCTGTTTACTTTAGATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTTGACACAGGAGA
.................................................................................((.(((.................)))))....................((((((.(((((..((.(((........))).........((....))........))..)))))))))))..................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040024(GSM532909)
G613N. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
................................................................................................................................................................................CTCATACAACTCTGTTTACTTTAG..................................................24111.0011.00----4.00-2.00----1.00----1.00-1.00---------1.00-1.00---------
......................................................................................ATACATATCTTTTTTTTTG.................................................................................................................................................198.000.00--3.002.00-2.00-1.00--------------------------------
......................................................................................ATACATATCTTTTTTTTTTG................................................................................................................................................205.000.00--1.003.00---1.00--------------------------------
................................................................................................................................................................................CTCATACAACTCTGTTTACTTTAGA.................................................2513.003.00----------------------1.00---------1.00---1.00---
.............................................................................................................................................................................................................................TATTTTTATGTTGAACTTGACACAGGAGA2912.002.00--------------1.00----------------1.00--------
........................................................................................................................................................ATTTTTAAAGCATTATTGGACATCCTCATACAACTCTGTTTACTTTAGATTGCACAGCCAGGAGCAGCAT............................7012.002.00------------2.00---------------------------
...................................................................................................................................................................................................................................TATGTTGAACTTGACACAGG...2012.002.00---------2.00------------------------------
.................................................................................................................................................................................TCATACAACTCTGTTTACTTTAG..................................................2312.002.00------1.00--------1.00------------------------
...............................................................................................................................................AGATTATAGATTTTTAAAGCATTATTGGACATCCTCATACAACTCTGTTTACTTTAG..................................................5712.002.00----------2.00-----------------------------
....................................................................................................................CTGAATTATTTGCCTGGG....................................................................................................................181.000.00-----------------------------1.00----------
....................................................................................................................................................................................................................................ATGTTGAACTTGACACAGGAGA2211.001.00----1.00-----------------------------------
........................................................................................ACATATCTTTTTTTCTTG................................................................................................................................................1811.001.00-----1.00----------------------------------
....................................................................................................TTCTTGTGCATTTAGGAAG...................................................................................................................................191.000.001.00---------------------------------------
......................................................................................................................................GATGAACTCAGATTATAGATTTTTAAAGC.......................................................................................2911.001.00-------------------------------------1.00--
.............................................................................................................................................................................................GTTTACTTTAGATTGCACAGCCAGGAGCAG...............................3011.001.00---------------------------1.00------------
.........................................................................................................................................................................GGACATCCTCATACAACTCTGTTTACTTTAG..................................................3111.001.00---------------------1.00------------------
........................................................................................ACATATCTTTTTTTCTTTTTG.............................................................................................................................................211.000.00--1.00-------------------------------------
.......................................................................................TACATATCTTTTTTTCTTTTG..............................................................................................................................................211.000.00--1.00-------------------------------------
.....................................................................................CATACATATCTTTTTTTTTTG................................................................................................................................................211.000.00---1.00------------------------------------
..................................................................................CAACATACATATCTTTTTTT....................................................................................................................................................2011.001.00-------------1.00--------------------------
...........................................................................................................................................................................ACATCCTCATACAACTCTGTTTACTCA....................................................271.000.001.00---------------------------------------
.......................................................TTCCACTAAGTGGCTTGGGATCA............................................................................................................................................................................231.000.00-------------------------1.00--------------
..........................................................................................................................................................................................................................GCATATTTTTATGTTGAACTTGACACAGG...2911.001.00------------------------1.00---------------
......................................................................TGGGATCTATAGCAACATACATAT............................................................................................................................................................2411.001.00---------------------------------1.00------
...............................................................................................................................................................................CCTCATACAACTCTGTTTACTTTAG..................................................2511.001.00-----------1.00----------------------------
.......................................................................................................................AATTATTTGCCTAGAGATGA...............................................................................................................2011.001.00----------------------------------1.00-----
............................................................................................................................................................................................................................ATATTTTTATGTTGAACTTGACACAGGAGA3011.001.00-------------------1.00--------------------
....................................................................................................................................................................................................................................ATGTTGAACTTGACACAGGAG.2111.001.00--------1.00-------------------------------
......................................................................................ATACATATCTTTTTTCTTG.................................................................................................................................................191.000.00--1.00-------------------------------------
......................................................................................................................................................................................................................................GTTGAACTTGACACAGGAGA2011.001.00--------------------------1.00-------------
......................................................................................ATACATATCTTTTTTTTTCA................................................................................................................................................201.000.00--1.00-------------------------------------
..........................................................................................................................TATTTGCCTAGAGATGAACTCAGATTATAGATT...............................................................................................3311.001.00-----------------1.00----------------------
........TGGGAGGATATTGTTTAGA...............................................................................................................................................................................................................................191.000.00-----------------------------------1.00----
..................................................................................CAACATACATATCTTTTTTCTTG.................................................................................................................................................231.000.00-----1.00----------------------------------
.......................................................................................................................................................................................AACTCTGTTTACTTTTCA.................................................181.000.00-------------1.00--------------------------
................................................................................................................................................................................CTCATACAACTCTGTTTACTTTA...................................................2311.001.00-----------------------1.00----------------
.........................................................................................................GTGCATTTAGACTGA..................................................................................................................................1540.250.25--------------------------------------0.25-
.........................................................................................CATATCTTTTTTTCTTG................................................................................................................................................1750.200.20-----0.20----------------------------------

Antisense strand
GACGCCACTGGGAGGATATTGTTAGTATCTTCCAGTTAGACTTTTTAAGCCCTAGTTCCACTAAGTGGCTTGGGATCTATAGCAACATACATATCTTTTTTTCTTGTGCATTTAGACTGAATTATTTGCCTAGAGATGAACTCAGATTATAGATTTTTAAAGCATTATTGGACATCCTCATACAACTCTGTTTACTTTAGATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTTGACACAGGAGA
.................................................................................((.(((.................)))))....................((((((.(((((..((.(((........))).........((....))........))..)))))))))))..................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040024(GSM532909)
G613N. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
......................................................................................................................................................................................................................AGCAGCATATTTTTAATCG................. 1910.000.003.007.00--------------------------------------
......................................................................................................................................................................................................................AGCAGCATATTTTTAACCG................. 191.000.001.00---------------------------------------
......................................................................................ATACATATCTTTTTTTCTA................................................................................................................................................. 191.000.00--------1.00-------------------------------
....................................................................................................TTCTTGTGCATTTAGACTCCTC................................................................................................................................ 221.000.00--------------------1.00-------------------
......................................................................................................................................................................................................................AGCAGCATATTTTTAATC.................. 181.000.00-1.00--------------------------------------
......................................................................................................................................................................................................................AGCAGCATATTTTTAAACG................. 191.000.001.00---------------------------------------
......................................................................................................................................................................................................................AGCAGCATATTTTTATGTACAG.............. 221.000.001.00---------------------------------------
...............................................................................................................................................TTTAAAAATCTATAATCT......................................................................................... 1840.250.25---------------------------------------0.25