ID: uc001kqp.2_intron_1_0_chr10_101950726_r.5p
GENE: (19)
chr10:101952855-101953104-


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(8)
BREAST 		(6)
CELL-LINE 		(4)
CERVIX 		(1)
HELA 		(2)
LIVER 		(2)
OTHER 		(3)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
TCAGCAGAACATGATCATTCTCTGTCATGTGTGGTAACTCCTCAAGATGGGTGGGTTTACTTTGTAACAATAGATAGCTGTGTTTTCATAGCAGTGGTATAGGAATGAGGCAGTAGTTGTTAAGGTAGTCTTCTGTGCCTTCAGACCAGGGTTGAGTCCTGACTATCCCTTTGTAATAATCTTAGGCAACTTACTTGACTTTTTTGATGTTCATATTTCCTCACCTGTAAAACAGGAATGTCTCATAGAA
.................................................................((((((.....((((((....)))))).((..(((....)))..))....)))))).................................................................................................................................
.................................................................66............................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189783SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189785SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR040032(GSM532917)
G603N. (cervix)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
.........................................................................................................TGAGGCAGTAGTTGTATAG..............................................................................................................................19183.000.00156.005.009.001.00-1.004.00-1.00---1.00-1.00-------1.00--------1.001.00--1.00-----
.........................................................................................................TGAGGCAGTAGTTGTACAG..............................................................................................................................1965.000.0047.0010.004.00---1.00-----1.00---1.00------1.00-----------------
.........................................................................................................TGAGGCAGTAGTTGTGTGG..............................................................................................................................198.000.00---4.00-2.00--------------------1.00---------1.00----
.........................................................................................................TGAGGCAGTAGTTGTATG...............................................................................................................................188.000.007.00-------1.00--------------------------------
.........................................................................................................TGAGGCAGTAGTTGTATA...............................................................................................................................186.000.004.00--1.00----1.00--------------------------------
.........................................................................................................TGAGGCAGTAGTTGTACA...............................................................................................................................186.000.006.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTTTAG..............................................................................................................................1915.001.005.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTATCG..............................................................................................................................195.000.005.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTACCG..............................................................................................................................193.000.003.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTATAA..............................................................................................................................193.000.003.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTACAA..............................................................................................................................193.000.003.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTATAT..............................................................................................................................193.000.003.00----------------------------------------
......................................................................TAGATAGCTGTGTTTTCA..................................................................................................................................................................1812.002.00-------2.00---------------------------------
.........................................................................................................TGAGGCAGTAGTTGTACAT..............................................................................................................................192.000.002.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTGCT...............................................................................................................................182.000.00---------------------1.00----------------1.00--
.........................................................................................................TGAGGCAGTAGTTGTTTA...............................................................................................................................1812.001.00---------------1.00-1.00-----------------------
.........................................................................................................TGAGGCAGTAGTTGTGTG...............................................................................................................................182.000.00-----1.00------------------1.00----------------
.........................................................................................................................................................................TTTGTAATAATCTTAGGCAACTTACTTGACTTTTTTGATGTTCATATTTCCTCACCTGTAAAACAGGAATGTC........7312.002.00----------2.00------------------------------
.........................................................................................................TGAGGCAGTAGTTGTAAAG..............................................................................................................................192.000.002.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTTACAG.............................................................................................................................2012.001.00-1.00----------------------------1.00----------
.........................................................................................................TGAGGCAGTAGTTGTTC................................................................................................................................1712.001.002.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTAGCG..............................................................................................................................191.000.001.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTTA................................................................................................................................1711.001.00----------------------------------1.00------
.........................................................................................................TGAGGCAGTAGTTGTACG...............................................................................................................................181.000.001.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTT.................................................................................................................................1611.001.001.00----------------------------------------
............................................................................................AGTGGTATAGGAATGAGGAGGC........................................................................................................................................221.000.00-------------1.00---------------------------
.........................................................................................................TGAGGCAGTAGTTGTATGG..............................................................................................................................191.000.00------------------1.00----------------------
........................................................................................................................TAAGGTAGTCTTCTGTAC................................................................................................................181.000.001.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTTTAT..............................................................................................................................1911.001.001.00----------------------------------------
.........................................................................ATAGCTGTGTTTTCATAGCAGCGGT........................................................................................................................................................251.000.00-------------------------1.00---------------
.........................................................................................................TGAGGCAGTAGTTGTCGAG..............................................................................................................................191.000.001.00----------------------------------------
.........................................................................................................................................................................................................................TCCTCACCTGTAAAACTCTG.............201.000.00--------------------1.00--------------------
.........................................................................................................TGAGGCAGTAGTTGTGGT...............................................................................................................................181.000.00-------------------------------------1.00---
.........................................................................................................TGAGGCAGTAGTTGTAGAG..............................................................................................................................191.000.001.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTAT................................................................................................................................171.000.001.00----------------------------------------
..................TCTCTGTCATGTGTGGTAACTC..................................................................................................................................................................................................................2211.001.00-------1.00---------------------------------
.........................................................................................................TGAGGCAGTAGTTGTAAA...............................................................................................................................181.000.00---------------------------------1.00-------
.........................................................................................................TGAGGCAGTAGTTGTCTAG..............................................................................................................................191.000.001.00----------------------------------------
............................................................................................................................................TCAGACCAGGGTTGAGTCCCGAC.......................................................................................231.000.00---------1.00-------------------------------
......................................................................TAGATAGCTGTGTTTTGT..................................................................................................................................................................181.000.00---------1.00-------------------------------
.........................................................................................................TGAGGCAGTAGTTGTACT...............................................................................................................................181.000.001.00----------------------------------------
.........................................................................................................TGAGGCAGTAGTTGTGGTT..............................................................................................................................191.000.00-----1.00-----------------------------------
.........................................................................................................TGAGGCAGTAGTTGTATTG..............................................................................................................................191.000.001.00----------------------------------------
........................................................................................................ATGAGGCAGTAGTTGTTATAGT............................................................................................................................221.000.00-------------------1.00---------------------
.......AACATGATCATTCTCTACTC...............................................................................................................................................................................................................................201.000.00----------------------------1.00------------
.CAGCAGAACATGATC..........................................................................................................................................................................................................................................1560.830.83---------------------------------------0.83-
.................................GTAACTCCTCAAGATG.........................................................................................................................................................................................................1620.500.50----------------------------------------0.50

Antisense strand
TCAGCAGAACATGATCATTCTCTGTCATGTGTGGTAACTCCTCAAGATGGGTGGGTTTACTTTGTAACAATAGATAGCTGTGTTTTCATAGCAGTGGTATAGGAATGAGGCAGTAGTTGTTAAGGTAGTCTTCTGTGCCTTCAGACCAGGGTTGAGTCCTGACTATCCCTTTGTAATAATCTTAGGCAACTTACTTGACTTTTTTGATGTTCATATTTCCTCACCTGTAAAACAGGAATGTCTCATAGAA
.................................................................((((((.....((((((....)))))).((..(((....)))..))....)))))).................................................................................................................................
.................................................................66............................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189783SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189785SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR040010(GSM532895)
G529N. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR040032(GSM532917)
G603N. (cervix)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
.............................................................................................................................................................TTACAAAGGGATAGTCAGG.......................................................................... 1915.005.00----5.00------------------------------------
...........................................................................................................................TCTGAAGGCACAGAAGACTACC......................................................................................................... 2212.002.00---------1.00-1.00-----------------------------
...........................................................................AGCTGTGTTTTCATATTA............................................................................................................................................................. 181.000.00---------------------------1.00-------------
...........................................................................................................CTACCTTAACAACTACTGCCT.......................................................................................................................... 2111.001.00-----------1.00-----------------------------
.....................................................................................................................................................TATTACAAAGGGATAGTCAGGACTCAACC........................................................................ 2911.001.00-----------------------------1.00-----------