ID: uc001knh.2_intron_1_0_chr10_99190411_f
GENE: (2)
chr10:99190361-99190761+


(2)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(1)
AGO3.ip
(11)
B-CELL
(4)
BRAIN
(6)
BREAST
(31)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(7)
HEART
(8)
HELA
(8)
LIVER
(2)
OTHER
(1)
RRP40.ip
(21)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CACCACCTCCGATGGAGCCCGACCATCCTTTCTACAGCAACATCAGTAAGGTATGGACAAACAGAGGTTTGGTCACTCCGCCCAGGATCAGGGGCTTTTAGTAGTGTCTGCCTAATCTCACTGAACTTACAATTCATGATAAAATAGTTAATTGTAATCCTTCCTTCTCCAGTGAATGACCTTCACTTACTAGAAGATATGGTTGATAGTTTACTATCTCCTTTTTTGTGTTTCCATAGTCAGATTTTATAAAACCCTGTGAATGTGAATGGGCCAAAATCGATACATCATGAAGTCTTTTAACAGATGTAACTCTTAATAAGTGGTGAACTTGGATTCTTTATTGCTTAGGATCGCAGGTATGCAGACCTCACAGAAGATCAGCTACCCTCCTGTGAGAG
.......................................................(((.....((((((.(((((((..((((........)))).......))))...))).))))))..((((.......))))..........)))............................................................................................................................................................................................................................................................
..................................................51.................................................................................................150.........................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR037941(GSM510479)
293DroshaTN. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR343337SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR040037(GSM532922)
G243T. (cervix)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343334SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR343335SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038857(GSM458540)
D20. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..................................................GTATGGACAAACAGAGG..............................................................................................................................................................................................................................................................................................................................................17167.0067.0061.00-1.00-------------1.00--1.00-----1.00------------1.00----------1.00----------------------------------------------------------
..................................................GTATGGACAAACAGAGGT.............................................................................................................................................................................................................................................................................................................................................18138.0038.0017.002.004.00--4.00---3.00--2.001.00-----1.001.00----------1.00-----------1.00--1.00-------------------------------------------------------------
..................................................GTATGGACAAACAGAGGA.............................................................................................................................................................................................................................................................................................................................................18114.0067.005.002.005.00--------------------1.00-----------------------1.00------------------------------------------------------------
..................................................GTATGGACAAACAGAGGTAA...........................................................................................................................................................................................................................................................................................................................................20110.0038.00-3.00--4.00------------------------1.00----1.00----------1.00--------------------------------------------------------------
..................................................GTATGGACAAACAGAGGAA............................................................................................................................................................................................................................................................................................................................................1918.0067.005.00---------------------1.00-------------1.00--1.00--------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................TGAACTTGGATTCTTTATTGCTTA...................................................2417.007.00---7.00--------------------------------------------------------------------------------------------------------
..................................................GTATGGACAAACAGAGGTA............................................................................................................................................................................................................................................................................................................................................1916.0038.00-4.002.00---------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGAAGAT....................2163.333.33-0.500.17----------------------0.17---0.17-------------------------0.67--0.33---0.170.50-------0.33------------------------0.170.17----------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGAAGATC...................2262.332.33-0.33--0.83-----------------------------------------------0.50-0.17----------0.17-----------------------0.17-0.17----------------
..................................................GTATGGACAAACAGAGGAATA..........................................................................................................................................................................................................................................................................................................................................2112.0067.00-2.00----------------------------------------------------------------------------------------------------------
...............................................................................GCCCAGGATCAGGGGCTTTTAGTAG.........................................................................................................................................................................................................................................................................................................2512.002.00------------------2.00-----------------------------------------------------------------------------------------
............TGGAGCCCGACCATCCTCTAC................................................................................................................................................................................................................................................................................................................................................................................212.000.00----------2.00-------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................AAGTCTTTTAACAGATGTAACTCTTAATAAGTGGTGAACTTGGATTCTTTATTGCTT....................................................5712.002.00-----------------2.00------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGAAGATCA..................2351.801.80--0.40-1.20-----------------------0.20-------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGAAGA.....................2061.501.50-0.170.33--------------------0.170.83-----------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGAAGATA...................2261.503.33----0.17-------------------0.17----0.17-----------------------------0.33----0.17----0.17-------------------------0.17-----0.17------
...........................................................................................................................................................................................................................................................................................................................................................................GCAGACCTCACAGAAGAT....................1861.171.17----------------------0.33-----0.17--------------------------------0.50--------------------------------------0.17-------
..................................................GTATGGACAAACAGAGGTAAA..........................................................................................................................................................................................................................................................................................................................................2111.0038.00-------------1.00----------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................GCAGGTATGCAGACCTCACAGAAGG.....................251.000.00------------------------------------------1.00-----------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................AAGTGGTGAACTTGGATTCTTTA..........................................................2311.001.00-----------------------------------------1.00------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................TGCAGACCTCACAGAAGATCAGCTACCCTCCCG......331.000.00--------------------------------------------1.00---------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................GTGAACTTGGATTCTTTATTGCTTAG..................................................2611.001.00----------------1.00-------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................GCAGACCTCACAGAAGA.....................1761.001.00---------------------------------------------------0.83----------------------------------------------0.17---------
...................................................................................................................................................................................................GATATGGTTGATAGTAGGT...........................................................................................................................................................................................191.000.00--------------1.00---------------------------------------------------------------------------------------------
...................................................................................AGGATCAGGGGCTTTTAGTA..........................................................................................................................................................................................................................................................................................................2011.001.00------1.00-----------------------------------------------------------------------------------------------------
..................................................GTATGGACAAACAGAGGTGG...........................................................................................................................................................................................................................................................................................................................................2011.0038.00-1.00----------------------------------------------------------------------------------------------------------
..................................................GTATGGACAAACAGAGGTTTGGTA.......................................................................................................................................................................................................................................................................................................................................241.000.00--------------------------------1.00---------------------------------------------------------------------------
..................................................GTATGGACAAACAGAGGTTTA..........................................................................................................................................................................................................................................................................................................................................211.000.00-----------------------------------1.00------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................AGGTATGCAGACCTCACAGAAGTTC...................251.000.00-----------1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................TGGTGAACTTGGATTCTTTATTGCTTAG..................................................2811.001.00--------1.00---------------------------------------------------------------------------------------------------
...............AGCCCGACCATCCTTTCTACAGCAACACCA....................................................................................................................................................................................................................................................................................................................................................................301.000.00---------------------1.00--------------------------------------------------------------------------------------
.....................ACCATCCTTTCTACAGCAACATCGG...................................................................................................................................................................................................................................................................................................................................................................251.000.00---------------------------------1.00--------------------------------------------------------------------------
.............................................................CAGAGGTTTGGTCACTCCGCCCA.............................................................................................................................................................................................................................................................................................................................2311.001.00------1.00-----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................TGCAGACCTCACAGAAGAG....................191.000.00----------------------------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................CTAGAAGATATGGTTGATAGTTT.............................................................................................................................................................................................2311.001.00--------------------------1.00---------------------------------------------------------------------------------
........................................CATCAGTAAGGTATGGACA......................................................................................................................................................................................................................................................................................................................................................1911.001.00--1.00---------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................CGCAGGTATGCAGACCTT.............................181.000.00--------------------1.00---------------------------------------------------------------------------------------
..................................................GTATGGACAAACAGAGGTTTGGTCACTCCGCCC..............................................................................................................................................................................................................................................................................................................................3311.001.00------------------------------1.00-----------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................GGTATGCAGACCTCACAGAAGATT...................241.000.00--------1.00---------------------------------------------------------------------------------------------------
..................................................GTATGGACAAACAGAGGTT............................................................................................................................................................................................................................................................................................................................................1911.001.00--1.00---------------------------------------------------------------------------------------------------------
......................................................................................................................CACTGAACTTACAATTAAAA.......................................................................................................................................................................................................................................................................201.000.00----------------------------------------1.00-------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................GTGGTGAACTTGGATTCTTTATTGCTT....................................................2711.001.00--------1.00---------------------------------------------------------------------------------------------------
..................................................GTATGGACAAACAGAGGAAAA..........................................................................................................................................................................................................................................................................................................................................2111.0067.00--1.00---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................CAGACCTCACAGAAGATCAGCTACCCTCCTGCG....331.000.00---------------------------1.00--------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGACCTCACAGAAGATC...................2160.670.67-0.50----------------------0.17-----------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................GCAGACCTCACAGAAGATC...................1960.670.67-0.33----------------------------------------------------------------------------------------0.17--------0.17--------
...................................................................................................................................................................................................................................................................................................................................................................GCAGGTATGCAGACCTCACAGAAGATC...................2750.600.60-0.40----------------------------0.20-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................GCAGACCTCACAGAAGATCAG.................2140.500.50-0.25--------------------------------------------------------------------------0.25-------------------------------
..................................................GTATGGACAAACAGAG...............................................................................................................................................................................................................................................................................................................................................1640.500.50----------------------0.50-------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................CAGACCTCACAGAAGATC...................1860.500.50----------------------------------------------------0.17-0.17--------------------------------------0.17--------------
............................................................................................................................................................................................................................................................................................................................................................................CAGACCTCACAGAAGATCAGCTACC............2540.500.50-----------------------------------------------------0.50------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGAAGATCAGT................2540.500.25--0.50---------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGAAG......................1960.500.50-0.170.17-------------------------------------------------------------------0.17-------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGACCTCACAGAAGATA...................2160.500.50------------------------0.33--------------------------------------------0.17--------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGACCTCACAGAAGAT....................2060.500.50--------------------------------------------------------------------0.17-------------------0.17-----0.17-------------
...............................CTACAGCAACATCAGTAAG...............................................................................................................................................................................................................................................................................................................................................................1970.430.43-----------------------------------------------------------------0.29------------------------------------0.14-----
..................................................................................................................................................................................................................................................................................................................................................................CGCAGGTATGCAGACCTCACAGAAG......................2550.400.40--------------------------------------------------0.20--------------------------------0.20------------------------
.....................................................................................................................................................................................................................................................................................................................................................................AGGTATGCAGACCTCACAGA........................2080.380.38--------------------------------------------------------0.38---------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................TGCAGACCTCACAGAAGATCAGCTACCCTCCTG......3330.330.33--------------------------------------------------------------0.33---------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................AGGTATGCAGACCTCACAGAAGAT....................2460.330.33------0.17----0.17------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................GTATGCAGACCTCACAGAAGATC...................2360.330.33--------------------------0.17-----------------------0.17---------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................AGGTATGCAGACCTCACAGAAGATA...................2560.330.33-----------0.17-------------------------------------------------------0.17----------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGAA.......................1870.290.29--------------------------------------------------------------------------0.29---------------------------------
.....................ACCATCCTTTCTACAGCAACATCA....................................................................................................................................................................................................................................................................................................................................................................2470.290.29-------------------------------------------------------------------------0.29----------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................GTATGCAGACCTCACAGAAGATCAGCT...............2740.250.25-------------------------------------------------------------------------------0.25----------------------------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGAAGATCAGC................2540.250.25-------------------------0.25----------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGACCTCACAGAAGATCAGCTACCCT..........3040.250.25-----------------------------------------------------------------------------0.25------------------------------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGAAGATCAGCT...............2640.250.25-----------------------------------------------------------0.25------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................TCACAGAAGATCAGCTAC.............1840.250.25---------------------------------------------------------0.25--------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................CAGACCTCACAGAAGATCAGCT...............2240.250.25--------------------------------0.25---------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................CGCAGGTATGCAGACCTCACAGAAGATCA..................2940.250.25------------------------------------------------------------------0.25-----------------------------------------
..................................................GTATGGACAAACAGAGAA.............................................................................................................................................................................................................................................................................................................................................1840.250.50----------------------------------------------------------0.25-------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................AGACCTCACAGAAGATCAGCTACC............2440.250.25---------------------------------------------------------0.25--------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGAAGATCAG.................2440.250.25--0.25---------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................AGGTATGCAGACCTCACA..........................1880.250.25-----------0.12------------------------------------------------------------0.12-----------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGACCTCACAGAAGATCAGC................2440.250.25------------------------------------------------------------------------------0.25-----------------------------
.....................ACCATCCTTTCTACAG............................................................................................................................................................................................................................................................................................................................................................................1690.220.22--------------------------------------------------------------------------------0.22---------------------------
..................................................GTATGGACAAACAGAAAAA............................................................................................................................................................................................................................................................................................................................................1990.220.11-----------------------0.11----------0.11-------------------------------------------------------------------------
............TGGAGCCCGACCATCC.....................................................................................................................................................................................................................................................................................................................................................................................1650.200.20--------------------------------------------------0.20---------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................CAGGTATGCAGACCTCACAGAAG......................2350.200.20-------------------------------0.20----------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................TCGCAGGTATGCAGACCTCACA..........................2250.200.20------------------------------------------------------------------------------------0.20-----------------------
.............................................................................................................................................................................................................................................................................................................................................................AGGATCGCAGGTATGCAG..................................1850.200.20------------0.20-----------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................GCAGACCTCACAGAAGATCA..................2050.200.20-----------------------0.20------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................CAGACCTCACAGAAGATCA..................1950.200.20-----------------------0.20------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................AAGATCAGCTACCCTCCTGTGAGA.2450.200.20---------------------------------------------------------------------------------------0.20--------------------
.ACCACCTCCGATGGAGCCCGACCATC......................................................................................................................................................................................................................................................................................................................................................................................2650.200.20-------------------------------------------------------------------------------------0.20----------------------
.............................................................................................................................................................................................................................................................................................................................................................AGGATCGCAGGTATGCA...................................1750.200.20-----------------------------------------------------0.20------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................TGCAGACCTCACAGAAGATCA..................2150.200.20--0.20---------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................GCAGGTATGCAGACCTCACAGAAGAT....................2650.200.20----------------------------------------------------------------------------------0.20-------------------------
.....................................................................................................................................................................................................................................................................................................................................................................AGGTATGCAGACCTCACAGAAGATCA..................2650.200.20--------------------------------------------------------------------------------------0.20---------------------
................................................................................................................................................................................................................................................................................................................................................................ATCGCAGGTATGCAGACCTCACAGA........................2550.200.20---------------------------0.20--------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................CGCAGGTATGCAGACCTCACAGAAGA.....................2650.200.20------------------------------------------------------------------0.20-----------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................GTATGCAGACCTCACAGAAGATCA..................2450.200.20------------------------------------------------------------------------0.20-----------------------------------
..............................................................................................................................................................................................................................................................................................................................................................GGATCGCAGGTATGCAGACCTCACA..........................2550.200.20--------------------------0.20---------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGACCTCACAGAAGA.....................1960.170.17------------------------0.17-----------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................GTATGCAGACCTCACAGAAGA.....................2160.170.17--------------------------------------------------------------------------------------------0.17---------------
..........................................................................................................................................................................................................................................................................................................................................................................TGCAGACCTCACAGAAGAT....................1960.170.17------------------------------------------------------0.17-----------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................AGGTATGCAGACCTCACAGAAGATC...................2560.170.17--------------------------------------------------------------------0.17---------------------------------------
....................GACCATCCTTTCTACAGCAACA.......................................................................................................................................................................................................................................................................................................................................................................2260.170.17------0.17-----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................TGCAGACCTCACAGAAGATC...................2060.170.17----------------------------------------------------0.17-------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................GAAGATCAGCTACCCTCC........1860.170.17--------------------------------------------------0.17---------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGACCTCACAGAAGAA....................2060.170.17------------------------------------------------------0.17-----------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGACCTCACAGAAG......................1860.170.17---------------------------------------------------------------------------0.17--------------------------------
....................GACCATCCTTTCTACAGCAAC........................................................................................................................................................................................................................................................................................................................................................................2160.170.17----------------------------------------------------------------0.17-------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGACCTCACAGAAGACCAG.................2360.170.17---------------------------0.17--------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................GTATGCAGACCTCACAGAAGAT....................2260.170.17----------------------------------------------------------------------0.17-------------------------------------
........................ATCCTTTCTACAGCAACATCAGTA.................................................................................................................................................................................................................................................................................................................................................................2470.140.14------0.14-----------------------------------------------------------------------------------------------------
......................CCATCCTTTCTACAGCAACATCAGTA.................................................................................................................................................................................................................................................................................................................................................................2670.140.14--------------------------------------------------------------------------------------------------------0.14---
............................TTTCTACAGCAACATCAGTAAG...............................................................................................................................................................................................................................................................................................................................................................2270.140.14--------------------------------------------------0.14---------------------------------------------------------
.....................ACCATCCTTTCTACAGCAACATCAG...................................................................................................................................................................................................................................................................................................................................................................2570.140.14---------------------------------0.14--------------------------------------------------------------------------
........................ATCCTTTCTACAGCAACATCA....................................................................................................................................................................................................................................................................................................................................................................2170.140.14----------------------------------------------------------------0.14-------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................GTATGCAGACCTCACAGAA.......................1970.140.14-------------------------------------------------------------------------------------------------------0.14----
.............................TTCTACAGCAACATCAGT..................................................................................................................................................................................................................................................................................................................................................................1880.120.12-------------------------------0.12----------------------------------------------------------------------------
.......................CATCCTTTCTACAGCAA.........................................................................................................................................................................................................................................................................................................................................................................1780.120.12------------------------------0.12-----------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................TATGCAGACCTCACAGA........................1780.120.12--------------------------------------------------------0.12---------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................ATGCAGACCTCACAGA........................1680.120.12----------------------------------------------------------------------------------------------------------0.12-
...........................CTTTCTACAGCAACATCA....................................................................................................................................................................................................................................................................................................................................................................1880.120.12-----------------------------------------------------------------------------------------------------------0.12
.......................................................................................................................................................................................................................................................................................................................................................................GTATGCAGACCTCACAGA........................1880.120.12--------------------------------------------------------0.12---------------------------------------------------
.................................ACAGCAACATCAGTAAG...............................................................................................................................................................................................................................................................................................................................................................1790.110.11---------------------------------------------------------0.11--------------------------------------------------
..................................................GTATGGACAAACAGAAAA.............................................................................................................................................................................................................................................................................................................................................1890.110.11--0.11---------------------------------------------------------------------------------------------------------
..................................................GTATGGACAAACAGA................................................................................................................................................................................................................................................................................................................................................1590.110.11---------------------------------------------------------------------------0.11--------------------------------

Antisense strand
CACCACCTCCGATGGAGCCCGACCATCCTTTCTACAGCAACATCAGTAAGGTATGGACAAACAGAGGTTTGGTCACTCCGCCCAGGATCAGGGGCTTTTAGTAGTGTCTGCCTAATCTCACTGAACTTACAATTCATGATAAAATAGTTAATTGTAATCCTTCCTTCTCCAGTGAATGACCTTCACTTACTAGAAGATATGGTTGATAGTTTACTATCTCCTTTTTTGTGTTTCCATAGTCAGATTTTATAAAACCCTGTGAATGTGAATGGGCCAAAATCGATACATCATGAAGTCTTTTAACAGATGTAACTCTTAATAAGTGGTGAACTTGGATTCTTTATTGCTTAGGATCGCAGGTATGCAGACCTCACAGAAGATCAGCTACCCTCCTGTGAGAG
.......................................................(((.....((((((.(((((((..((((........)))).......))))...))).))))))..((((.......))))..........)))............................................................................................................................................................................................................................................................
..................................................51.................................................................................................150.........................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR037941(GSM510479)
293DroshaTN. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR343337SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR040037(GSM532922)
G243T. (cervix)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343334SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR343335SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM359178(GSM359178)
hela_nucl_t. (hela)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038857(GSM458540)
D20. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..............................................................................................................................................................................................................................................................CCCTGTGAATGTGAAATTT................................................................................................................................ 192.000.00---------------2.00--------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................TCTTTTAACAGATGTTAA........................................................................................ 182.000.00-------2.00----------------------------------------------------------------------------------------------------
...........................................................................................................................................................AATCCTTCCTTCTCCCGG.................................................................................................................................................................................................................................... 181.000.00-----------1.00------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................TTTTGGCCCATTCACATTCACAGGG.......................................................................................................................... 2511.001.00----------1.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................AATGTGAATGGGCCAAATTTG....................................................................................................................... 211.000.00--------------1.00---------------------------------------------------------------------------------------------
............................................TCTGTTTGTCCATACCTTACT................................................................................................................................................................................................................................................................................................................................................ 2111.001.00------1.00-----------------------------------------------------------------------------------------------------
......................................................................................................................................AAGGAAGGATTACAATTAACTATTTTATCATG........................................................................................................................................................................................................................................... 3211.001.00------------------------------------------------1.00-----------------------------------------------------------
..........................CCTTTCTACAGCAACGGGC.................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-1.00----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................CCCTGTGAATGTGAAGTT................................................................................................................................. 181.000.00-------------------------------------1.00----------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................CCACTTATTAAGAGTTAC........................................................................... 1811.001.00---------------------1.00--------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................ACCCTGTGAATGTGAACCA................................................................................................................................. 191.000.00-------1.00----------------------------------------------------------------------------------------------------
.......................................................................................CTACTAAAAGCCCCTGA......................................................................................................................................................................................................................................................................................................... 1720.500.50------------------------------------------------------------0.50-----------------------------------------------
.................GCTGTAGAAAGGATGGTCGGG........................................................................................................................................................................................................................................................................................................................................................................... 2140.250.25-------------------------------------------------------------------0.25----------------------------------------
................TGTAGAAAGGATGGTCGGGC............................................................................................................................................................................................................................................................................................................................................................................. 2050.200.20---------------------------------------------------------------------------------0.20--------------------------
....GGCTCCATCGGAGGT.............................................................................................................................................................................................................................................................................................................................................................................................. 1570.140.14-------------------------0.14----------------------------------------------------------------------------------