ID: uc001kmy.2_intron_13_0_chr10_99025883_r.5p
GENE: (1)
chr10:99052129-99052378-


(8)
B-CELL 		(15)
BREAST 		(27)
CELL-LINE 		(13)
CERVIX 		(3)
HEART 		(3)
HELA 		(3)
LIVER 		(1)
OTHER 		(27)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
ACTGAGGCACAGAGTGAAGGGGAGGTGCCAGCCCGCGAATCCGGCCGGAGGTGAGCTGAGTTTGGTCCAGTTTCCTGGGAAACGCGGCCTTGGGCTGGTAGTCCTGCCGCCTTTGCCTTGGGTCACGGAGGCGCACGGTTCGGGCTTTGTTTCTTTCTCCCACGGCGTTTCTCATCGTCGCGCCTGCGGGGGCTGAGGCGCGGGGGTCGGGCCTGGGCGCTGGACTCCAGCCAAACCCCCCGCTCGGTCC
...................................................................................(((((...((((.....)))).)))))....(((((((.((.((.(((((((((((..((((.((((...........)))).))))...))))).)))))).)).)).)))))))...................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040015(GSM532900)
G623T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR040027(GSM532912)
G220T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040019(GSM532904)
G701T. (cervix)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040025(GSM532910)
G613T. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR040033(GSM532918)
G603T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR191430(GSM715540)
167genomic small RNA (size selected RNA from . (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR040010(GSM532895)
G529N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		GSM532873(GSM532873)
G699N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		GSM532888(GSM532888)
G761T. (cervix)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
......................................................................................GCCTTGGGCTGGTAGTCC..................................................................................................................................................1818.008.005.00--2.00-----------------------------------------------------------------------------------1.00---------------
................................................................................................................................................................................GTCGCGCCTGCGGGGGC.........................................................1717.007.00-6.00-1.00---------------------------------------------------------------------------------------------------
....AGGCACAGAGTGAAGGGG....................................................................................................................................................................................................................................1815.005.00------1.001.002.00--------------------------------------------1.00-------------------------------------------------
........ACAGAGTGAAGGGGAGGTG...............................................................................................................................................................................................................................1915.005.00-------------------------2.00------------------1.00--------------1.00---------------1.00---------------------------
.....GGCACAGAGTGAAGGGGAGGT................................................................................................................................................................................................................................2114.004.00-----4.00-------------------------------------------------------------------------------------------------
.........CAGAGTGAAGGGGAGGTGC..............................................................................................................................................................................................................................1914.004.00--2.00------------------------------------------------------------------1.00----------------1.00----------------
.........CAGAGTGAAGGGGAGGTG...............................................................................................................................................................................................................................1814.004.00-----------1.00--------1.00-----1.00---------------------------------------------1.00------------------------------
....................................................................................CGGCCTTGGGCTGGTAGTCCTG................................................................................................................................................2213.003.00---2.00---------------------------------1.00-----------------------------------------------------------------
..................................GCGAATCCGGCCGGAGGT......................................................................................................................................................................................................1813.003.00-------------2.00--------------------------------------------------------1.00--------------------------------
...................................................................................................................................................................................GCGCCTGCGGGGGCTGAGG....................................................1913.003.00-3.00-----------------------------------------------------------------------------------------------------
.............GTGAAGGGGAGGTGCCAG...........................................................................................................................................................................................................................1822.502.50-----------0.500.50---------------0.50-----------------------------------------------------------0.50-0.50------------
...................................CGAATCCGGCCGGAGGTGAGCTGA...............................................................................................................................................................................................2412.002.00--2.00----------------------------------------------------------------------------------------------------
.......CACAGAGTGAAGGGGAGGTG...............................................................................................................................................................................................................................2012.002.00----------1.00----------------1.00---------------------------------------------------------------------------
................................................................................................................................AGGCGCACGGTTCGGGC.........................................................................................................1712.002.00------------------2.00------------------------------------------------------------------------------------
.....................................................................................................................TTGGGTCACGGAGGCGCA...................................................................................................................1812.002.002.00------------------------------------------------------------------------------------------------------
.................AGGGGAGGTGCCAGCCCG.......................................................................................................................................................................................................................1812.002.00------1.00---1.00--------------------------------------------------------------------------------------------
...............................................................................................................TTTGCCTTGGGTCACGGAGG.......................................................................................................................2012.002.00----2.00--------------------------------------------------------------------------------------------------
..................................................................................................................GCCTTGGGTCACGGAGG.......................................................................................................................1712.002.00--2.00----------------------------------------------------------------------------------------------------
..............................................................................................................CTTTGCCTTGGGTCACGG..........................................................................................................................1812.002.00-2.00-----------------------------------------------------------------------------------------------------
..................................................................................CGCGGCCTTGGGCTGGTAGTCCTGC...............................................................................................................................................2512.002.002.00------------------------------------------------------------------------------------------------------
.........................................................................CCTGGGAAACGCGGCGCGG..............................................................................................................................................................192.000.00----2.00--------------------------------------------------------------------------------------------------
.......CACAGAGTGAAGGGGAGG.................................................................................................................................................................................................................................1812.002.00----------------------1.00-----------------------------------------1.00--------------------------------------
....AGGCACAGAGTGAAGGGGAG..................................................................................................................................................................................................................................2012.002.00--------------------------1.00---1.00------------------------------------------------------------------------
....................................................................................CGGCCTTGGGCTGGTAGTCCT.................................................................................................................................................2112.002.00-------2.00-----------------------------------------------------------------------------------------------
......................................................................................GCCTTGGGCTGGTAGTCCTG................................................................................................................................................2012.002.00--------------1.00---------------------------------------------------------------------1.00------------------
......................................................................................GCCTTGGGCTGGTAGTC...................................................................................................................................................1721.501.501.00--0.50---------------------------------------------------------------------------------------------------
...............GAAGGGGAGGTGCCAGC..........................................................................................................................................................................................................................1731.331.331.00-----------------------------------------------------------------------------------------------0.33------
.........................................................................................................GCCGCCTTTGCCTTGGGTCA.............................................................................................................................2011.001.00--1.00----------------------------------------------------------------------------------------------------
............................................CCGGAGGTGAGCTGAGTT............................................................................................................................................................................................1811.001.00--------------1.00----------------------------------------------------------------------------------------
................................................................................................................................AGGCGCACGGTTCGGGCT........................................................................................................1811.001.00-----------------------------------------------------------------1.00-------------------------------------
........................................................................TCCTGGGAAACGCGGCGC................................................................................................................................................................181.000.00--------------------------------------------------1.00----------------------------------------------------
................................................................................................................................................................................................................................CTCCAGCCAAACCCCCCGCTTT....221.000.00-------------------------------------------------------1.00-----------------------------------------------
.......................GGTGCCAGCCCGCGAATCC................................................................................................................................................................................................................1911.001.00----------------------------------1.00--------------------------------------------------------------------
...........................................GCCGGAGGTGAGCTGAGTTTGG.........................................................................................................................................................................................2211.001.00----------------------------------------------------------1.00--------------------------------------------
..............................................................................GAAACGCGGCCTTGGGCTGGT.......................................................................................................................................................2111.001.00-----------------------------------------1.00-------------------------------------------------------------
..................GGGGAGGTGCCAGCCCGC......................................................................................................................................................................................................................1811.001.00-------------------------------------------------------------------1.00-----------------------------------
..............................................................................GAAACGCGGCCTTGGGC...........................................................................................................................................................1711.001.00---1.00---------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................GGGGGTCGGGCCTGGCGGG..............................191.000.00---------------------------------1.00---------------------------------------------------------------------
.................................................................................................................TGCCTTGGGTCACGGAGG.......................................................................................................................1811.001.00--1.00----------------------------------------------------------------------------------------------------
..........AGAGTGAAGGGGAGGTGCC.............................................................................................................................................................................................................................1911.001.00------------------------------------------------------1.00------------------------------------------------
............................................................................GGGAAACGCGGCCTTGGGCTGG........................................................................................................................................................2211.001.00----------------------------1.00--------------------------------------------------------------------------
..TGAGGCACAGAGTGAAGGGG....................................................................................................................................................................................................................................2011.001.00---------------------1.00---------------------------------------------------------------------------------
..................................................................................................................................................................................CGCGCCTGCGGGGGCGG.......................................................171.000.00-----------------------------------------------------------------------------1.00-------------------------
.......................................................................................................................................................................................CTGCGGGGGCTGAGGCGCGG...............................................2011.001.00-----------------------------------------------------------------------------------1.00-------------------
.....................GAGGTGCCAGCCCGCGAATCCGG..............................................................................................................................................................................................................2311.001.00-------------------------------1.00-----------------------------------------------------------------------
..............................................................................GAAACGCGGCCTTGGGCTGGTAG.....................................................................................................................................................2311.001.00-------1.00-----------------------------------------------------------------------------------------------
.....................................AATCCGGCCGGAGGTG.....................................................................................................................................................................................................1611.001.001.00------------------------------------------------------------------------------------------------------
...............................CCCGCGAATCCGGCCGGA.........................................................................................................................................................................................................1811.001.00----------------------------------------------------------------------------1.00--------------------------
..................................GCGAATCCGGCCGGAGGTGAGCTGA...............................................................................................................................................................................................2511.001.001.00------------------------------------------------------------------------------------------------------
.............................................................................GGAAACGCGGCCTTGGGCTGGTAG.....................................................................................................................................................2411.001.00--------1.00----------------------------------------------------------------------------------------------
........................GTGCCAGCCCGCGAATCCG...............................................................................................................................................................................................................1911.001.00--------------------------------------------------------------------------1.00----------------------------
.....................................AATCCGGCCGGAGGTGAGCTGAGTTTGGTCCAG....................................................................................................................................................................................3311.001.00---------1.00---------------------------------------------------------------------------------------------
......................................................................................GCCTTGGGCTGGTAGTCCT.................................................................................................................................................1911.001.00---------------------------------------------------------------1.00---------------------------------------
....AGGCACAGAGTGAAGGGGA...................................................................................................................................................................................................................................1911.001.00------1.00------------------------------------------------------------------------------------------------
.............................................................................................................................................................TCCCACGGCGTTTCTCAT...........................................................................1811.001.00--------------------------------------------------------------------1.00----------------------------------
.........CAGAGTGAAGGGGAGGTGCCAGCC.........................................................................................................................................................................................................................2411.001.00--------------------------------------------------------1.00----------------------------------------------
...GAGGCACAGAGTGAAGGGGA...................................................................................................................................................................................................................................2011.001.00---------------------------------------------------------1.00---------------------------------------------
...............GAAGGGGAGGTGCCAGCC.........................................................................................................................................................................................................................1811.001.00--------------------1.00----------------------------------------------------------------------------------
.......................GGTGCCAGCCCGCGAATC.................................................................................................................................................................................................................1811.001.00------------------------------------------1.00------------------------------------------------------------
........................................................................TCCTGGGAAACGCGGCAGC...............................................................................................................................................................191.000.00----------------1.00--------------------------------------------------------------------------------------
....................................GAATCCGGCCGGAGGTGA....................................................................................................................................................................................................1811.001.00-----------1.00-------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................GGGGGTCGGGCCTGGTTAG..............................191.000.00---------------------------------------1.00---------------------------------------------------------------
.CTGAGGCACAGAGTGAAGGGG....................................................................................................................................................................................................................................2111.001.00---------------------------------------------------------------------------------1.00---------------------
...................................................................................GCGGCCTTGGGCTGGTAGT....................................................................................................................................................1911.001.00------------------------------------------------------------------------------1.00------------------------
....................................................................................CGGCCTTGGGCTGGTAGTCCTGCC..............................................................................................................................................2411.001.00----------------------------------------------1.00--------------------------------------------------------
.........................TGCCAGCCCGCGAAT..................................................................................................................................................................................................................1511.001.00--------------------------------------1.00----------------------------------------------------------------
............AGTGAAGGGGAGGTGCTAGC..........................................................................................................................................................................................................................201.000.00------------1.00------------------------------------------------------------------------------------------
.........................................................................................................................GTCACGGAGGCGCACGGTTCG............................................................................................................2111.001.00---------------------------------------------1.00---------------------------------------------------------
....AGGCACAGAGTGAAGGGGAA..................................................................................................................................................................................................................................2011.001.00------1.00------------------------------------------------------------------------------------------------
.........................................................................................................................................GTTCGGGCTTTGTTTCTTTCTCC..........................................................................................2311.001.00----------------------------------------------------1.00--------------------------------------------------
..................................................................................................................................GCGCACGGTTCGGGCTTTG.....................................................................................................1911.001.001.00------------------------------------------------------------------------------------------------------
.......................GGTGCCAGCCCGCGAATCCG...............................................................................................................................................................................................................2011.001.00-----------------------1.00-------------------------------------------------------------------------------
..........................................................................................................................................................................................CGGGGGCTGAGGCGCGGGGGTTA.........................................231.000.00------------------------------------1.00------------------------------------------------------------------
....................................................................................................GTCCTGCCGCCTTTGCC.....................................................................................................................................1711.001.00-------------------------------------------1.00-----------------------------------------------------------
..........AGAGTGAAGGGGAGGTGCCA............................................................................................................................................................................................................................2011.001.00-------------------------------------------------------------1.00-----------------------------------------
............AGTGAAGGGGAGGTGCCA............................................................................................................................................................................................................................1821.001.00---------------------------0.50----------------------------------------------------------------0.50----------
.............GTGAAGGGGAGGTGCCAGCCC........................................................................................................................................................................................................................2111.001.00------------1.00------------------------------------------------------------------------------------------
............................................................................GGGAAACGCGGCCTTGGGCTGGTAG.....................................................................................................................................................2511.001.00-----------------------1.00-------------------------------------------------------------------------------
.................................................................................ACGCGGCCTTGGGCTGGTA......................................................................................................................................................1911.001.00------------------------------------------------------------1.00------------------------------------------
..................GGGGAGGTGCCAGCCTAG......................................................................................................................................................................................................................181.000.00-------------------------------------------------------------------------1.00-----------------------------
................................................................................................................................AGGCGCACGGTTCGGGCTTT......................................................................................................2011.001.00----------1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GGGTCGGGCCTGGGCGCGCG...........................2021.000.50-----------------1.00-------------------------------------------------------------------------------------
.....GGCACAGAGTGAAGGGGA...................................................................................................................................................................................................................................1811.001.00-------------------1.00-----------------------------------------------------------------------------------
......................AGGTGCCAGCCCGCGGGGA.................................................................................................................................................................................................................191.000.00---------1.00---------------------------------------------------------------------------------------------
......................................................................................GCCTTGGGCTGGTAGTCCTGC...............................................................................................................................................2111.001.00--1.00----------------------------------------------------------------------------------------------------
.....GGCACAGAGTGAAGGGGAGGTG...............................................................................................................................................................................................................................2211.001.00-----------------1.00-------------------------------------------------------------------------------------
...............................................................................AAACGCGGCCTTGGGC...........................................................................................................................................................1611.001.00---1.00---------------------------------------------------------------------------------------------------
...........................................GCCGGAGGTGAGCTGAGTT............................................................................................................................................................................................1911.001.00--------------------------------------------------------------------------------1.00----------------------
..........................................................................CTGGGAAACGCGGCCTTG..............................................................................................................................................................1811.001.00---------------------------------------------------1.00---------------------------------------------------
....................................................................................................................................GCACGGTTCGGGCTTTGT....................................................................................................1811.001.00---1.00---------------------------------------------------------------------------------------------------
..........................................GGCCGGAGGTGAGCTGAGTTTGG.........................................................................................................................................................................................2311.001.00----------------------1.00--------------------------------------------------------------------------------
...................................CGAATCCGGCCGGAGGTGAGCTGAG..............................................................................................................................................................................................2511.001.00-------------------------------------------------1.00-----------------------------------------------------
...................................................................................................................................................................................................AGGCGCGGGGGTCGGGGC.....................................181.000.00----------------------------------------1.00--------------------------------------------------------------
............................................................................................................................................................................................GGGGCTGAGGCGCGGTAG............................................181.000.00--------------------------------------------------------------1.00----------------------------------------
.........................TGCCAGCCCGCGAATATTG..............................................................................................................................................................................................................1911.001.00---------------1.00---------------------------------------------------------------------------------------
........................................................................................CTTGGGCTGGTAGTCCTG................................................................................................................................................1820.500.500.50------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GGGTCGGGCCTGGGCGC..............................1720.500.50---------------------------------------------------------------------------------------------0.50---------
..........AGAGTGAAGGGGAGGTG...............................................................................................................................................................................................................................1780.500.50--------------------------------------------------------------------------------------------------0.25--0.120.12
.....................................................................................GGCCTTGGGCTGGTAGTC...................................................................................................................................................1820.500.50-----------------------------------------------------------------------------------------0.50-------------
...........GAGTGAAGGGGAGGTGCC.............................................................................................................................................................................................................................1820.500.50-------------------------------------------------------------------------------------------0.50-----------
....................................................................................................................................................GTTTCTTTCTCCCACGG.....................................................................................1720.500.500.50------------------------------------------------------------------------------------------------------
..........AGAGTGAAGGGGAGGTGC..............................................................................................................................................................................................................................1870.430.43-------------0.14--------------------------------------------------------------------------0.14-----------0.14--
...GAGGCACAGAGTGAAGGG.....................................................................................................................................................................................................................................1830.330.33-----------0.33-------------------------------------------------------------------------------------------
....AGGCACAGAGTGAAGGG.....................................................................................................................................................................................................................................1730.330.33------------------------------0.33------------------------------------------------------------------------
...........GAGTGAAGGGGAGGTGC..............................................................................................................................................................................................................................1780.250.25----0.25--------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GGGTCGGGCCTGGGC................................1560.170.17-------------------------------0.17-----------------------------------------------------------------------
....................................................................................................................................................................................................GGCGCGGGGGTCGGG.......................................1560.170.17---------------------------------------------------------------------------------------------------0.17---

Antisense strand
ACTGAGGCACAGAGTGAAGGGGAGGTGCCAGCCCGCGAATCCGGCCGGAGGTGAGCTGAGTTTGGTCCAGTTTCCTGGGAAACGCGGCCTTGGGCTGGTAGTCCTGCCGCCTTTGCCTTGGGTCACGGAGGCGCACGGTTCGGGCTTTGTTTCTTTCTCCCACGGCGTTTCTCATCGTCGCGCCTGCGGGGGCTGAGGCGCGGGGGTCGGGCCTGGGCGCTGGACTCCAGCCAAACCCCCCGCTCGGTCC
...................................................................................(((((...((((.....)))).)))))....(((((((.((.((.(((((((((((..((((.((((...........)))).))))...))))).)))))).)).)).)))))))...................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040015(GSM532900)
G623T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR040027(GSM532912)
G220T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040019(GSM532904)
G701T. (cervix)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040025(GSM532910)
G613T. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR040033(GSM532918)
G603T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR191430(GSM715540)
167genomic small RNA (size selected RNA from . (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR040010(GSM532895)
G529N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		GSM532873(GSM532873)
G699N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		GSM532888(GSM532888)
G761T. (cervix)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
.......................................................................................................................................................................CAGGCGCGACGATGAGAAA................................................................ 1913.003.00----3.00--------------------------------------------------------------------------------------------------
.........................................................................................................CCAAGGCAAAGGCGGC................................................................................................................................. 1612.002.00------------------------1.00-----------------------------------------1.00------------------------------------
............................................................TTTGGTCCAGTTTCCTGCT........................................................................................................................................................................... 191.000.00--------------------------------1.00----------------------------------------------------------------------
........................................................................................................TGCCGCCTTTGCCTTCGC................................................................................................................................ 181.000.00-------------------1.00-----------------------------------------------------------------------------------
..................................................................................................................................................................CGGCGTTTCTCATCGTCGATT................................................................... 211.000.00----------------------------------------------------------------------------------1.00--------------------
....................................................CCCAGGAAACTGGACCAAACTCAGCTC........................................................................................................................................................................... 2711.001.00-----------------------------------------------1.00-------------------------------------------------------
..........................................................................CTGGGAAACGCGGCCTAGT............................................................................................................................................................. 191.000.00-------------------------------------------------------------------------------1.00-----------------------
........CACCTCCCCTTCACTCTGT............................................................................................................................................................................................................................... 1911.001.00-----------------------------1.00-------------------------------------------------------------------------
........CCTCCCCTTCACTCTGT................................................................................................................................................................................................................................. 1731.001.00-----------------------------0.33-----------------------------------------------------------------0.33-0.33-----
.........................................................................................................CCCAAGGCAAAGGCGGC................................................................................................................................ 1711.001.00------------------------1.00------------------------------------------------------------------------------
...............................CTCAGCTCACCTCCGGCCGGATTCGCGGG.............................................................................................................................................................................................. 2911.001.00----------------1.00--------------------------------------------------------------------------------------
.....................................................................................................................................................................................................GCGCGGGGGTCGGGCGCGC.................................. 191.000.00------------------------------------------------1.00------------------------------------------------------
......................................................................................................................................................................................................CGCGGGGGTCGGGCCTGG.................................. 181.000.00-------------------------------------------------------------------------------------1.00-----------------
.................................................................................................................................................................................TCGCGCCTGCGGGGGATTG...................................................... 191.000.00---------------1.00---------------------------------------------------------------------------------------
....................................................TGGACCAAACTCAGCTC..................................................................................................................................................................................... 1711.001.00-----------------------------------------------------------------------1.00-------------------------------
.........................................................................................................................................................................................................................CGCTGGACTCCAGCCAAAGGG............ 211.000.00---------1.00---------------------------------------------------------------------------------------------
....................................................TCCCAGGAAACTGGACCAAACTCAGCTC.......................................................................................................................................................................... 2811.001.00-----------------------------------1.00-------------------------------------------------------------------
.........................................................................................................CAAGGCAAAGGCGGC.................................................................................................................................. 1520.500.50----------------------------------------------------------------------------------------------0.50--------