ID: uc001kjj.2_intron_0_0_chr10_95653918_f.5p
GENE: (1)
chr10:95653868-95654117+


(2)
AGO2.ip
(7)
B-CELL
(3)
BRAIN
(6)
BREAST
(13)
CELL-LINE
(5)
CERVIX
(1)
HEART
(1)
KIDNEY
(6)
LIVER
(2)
OTHER
(5)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CGCCACTGAGGAGCCGGCGGCCGCCGAGGCAGCTGGGGCGCCAGACCGCGGTAGGTGCTGGCTCTGCCTTTCCTCGCCGTGTTGCTCCCGCACCGAGCCGGGTGAGTGCGCGGTGTGGATCGGGCTCTGGTCTCGCTCGGGGGTCCCGAGCGGGCGCCGGCGGGTTGGGGTCCCCGCAACCCGGGCACAGTGCCCGCCGCGCCTCCGTCCCCACCCTGCCCGGGGCTCGGGAAACCCCTCGAGCTGTCAG
..........................................................................................................(((.((((((.((((((...)))))).((((((((...)))))))).)))))))))........................................................................................
...................................................................................................100.....................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189782TAX577746(Rovira)
total RNA. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040034(GSM532919)
G001N. (cervix)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
GSM532877(GSM532877)
G691N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR553575(SRX182781)
source: Kidney. (Kidney)
.....................................................................................................................................................GCGGGCGCCGGCGGGTTT...................................................................................1811.000.00-5.00---1.00----------1.00----------------1.00------1.00--1.00----1.00----
.......................................................................................................................................................GGGCGCCGGCGGGTTTGG.................................................................................185.000.002.00-------------1.00---------------------1.00-------1.00--------
.....................................................................................................................................................GCGGGCGCCGGCGGGTTTGG.................................................................................204.000.00--1.00-------------------1.00-1.00---------------------1.00------
........................................................................................................AGTGCGCGGTGTGGATCGGGC.............................................................................................................................2112.002.00----------2.00------------------------------------------
...................................................................................................................................................................................................GCCGCGCCTCCGTCCTCCC....................................192.000.00-------------1.00----------------1.00----------------------
.....................................................................................................GTGAGTGCGCGGTGTGGA...................................................................................................................................1812.002.00---------2.00-------------------------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGTTTG..................................................................................192.000.00---2.00-------------------------------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGCC....................................................................................171.000.00------------1.00----------------------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGTTGGGCG...............................................................................221.000.00---1.00-------------------------------------------------
......................................................................................................................................................CGGGCGCCGGCGGGTGC...................................................................................171.000.00--------------------------------------1.00--------------
..............CGGCGGCCGCCGAGGGGCC.........................................................................................................................................................................................................................191.000.00-------1.00---------------------------------------------
.......................................................................................................................................................GGGCGCCGGCGGGTTTGGT................................................................................191.000.00-----------------------------------1.00-----------------
..............................................CGCGGTAGGTGCTGGCTCTGCCTCTCC.................................................................................................................................................................................271.000.00---------------------------------------1.00-------------
..............................................................................................................................................................GGCGGGTTGGGGTCCGGG..........................................................................181.000.00--------1.00--------------------------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGTTTGAA................................................................................211.000.00-----------------1.00-----------------------------------
..............................................................................................................................................................GGCGGGTTGGGGTCCGCA..........................................................................181.000.00--------1.00--------------------------------------------
.......................................................................................................................................................GGGCGCCGGCGGGTTTTT.................................................................................181.000.00-----1.00-----------------------------------------------
.....................................................................................................................................................................................CGGGCACAGTGCCCGGTGG..................................................191.000.00-------------------------1.00---------------------------
..............................................................................................................................................................GGCGGGTTGGGGTCCCCC..........................................................................181.000.00-------------------------------1.00---------------------
.............................................................................................................GCGGTGTGGATCGGG..............................................................................................................................1511.001.00---------------------------1.00-------------------------
................................................................................................................................................CCCGAGCGGGCGCCGG..........................................................................................1611.001.00---------------------------------------------1.00-------
..........................................................................................................................................GGGGGTCCCGAGCGGTCGG.............................................................................................191.000.00---------------------1.00-------------------------------
..........................................................................................................................................................CGCCGGCGGGTTGGGTTAC.............................................................................191.000.00-------1.00---------------------------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGTTTGGC................................................................................211.000.00--1.00--------------------------------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGCTTG..................................................................................191.000.00--1.00--------------------------------------------------
..........................................................................................................................................................CGCCGGCGGGTTGGGGCTCG............................................................................201.000.00-----------------------------------------1.00-----------
......................................................................................................TGAGTGCGCGGTGTGGATCGGGC.............................................................................................................................2311.001.00--------------------------------1.00--------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGTTTGGG................................................................................211.000.00-----1.00-----------------------------------------------
........................................................................................................................................................................................................GCCTCCGTCCCCACCACCC...............................191.000.00-------------------1.00---------------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGTTTT..................................................................................191.000.00--1.00--------------------------------------------------
.......................................................................................................................................................GGGCGCCGGCGGGTTTG..................................................................................171.000.001.00----------------------------------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGGGCG..................................................................................191.000.001.00----------------------------------------------------
..............CGGCGGCCGCCGAGGGC...........................................................................................................................................................................................................................171.000.00------------------------------------------1.00----------
.....................................................................................................................................................GCGGGCGCCGGCGGGTTTGGT................................................................................211.000.00---1.00-------------------------------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGCGC...................................................................................181.000.00-----------------------------1.00-----------------------
.........................................................CTGGCTCTGCCTTTCCTCGCC............................................................................................................................................................................2111.001.00----------------------------1.00------------------------
....................................................................................................................................................AGCGGGCGCCGGCGGC......................................................................................161.000.00-------------------------------------1.00---------------
.........GGAGCCGGCGGCCGCCGCGGC............................................................................................................................................................................................................................211.000.001.00----------------------------------------------------
...................................................................................................................................................GAGCGGGCGCCGGCGGG......................................................................................1720.500.50----0.50------------------------------------------------
..................................................................................................CGGGTGAGTGCGCGGTG.......................................................................................................................................1720.500.50---------------------------------------------------0.50-
............GCCGGCGGCCGCCGAGGC............................................................................................................................................................................................................................1830.330.33----------------------------------------------------0.33

Antisense strand
CGCCACTGAGGAGCCGGCGGCCGCCGAGGCAGCTGGGGCGCCAGACCGCGGTAGGTGCTGGCTCTGCCTTTCCTCGCCGTGTTGCTCCCGCACCGAGCCGGGTGAGTGCGCGGTGTGGATCGGGCTCTGGTCTCGCTCGGGGGTCCCGAGCGGGCGCCGGCGGGTTGGGGTCCCCGCAACCCGGGCACAGTGCCCGCCGCGCCTCCGTCCCCACCCTGCCCGGGGCTCGGGAAACCCCTCGAGCTGTCAG
..........................................................................................................(((.((((((.((((((...)))))).((((((((...)))))))).)))))))))........................................................................................
...................................................................................................100.....................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189782TAX577746(Rovira)
total RNA. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040034(GSM532919)
G001N. (cervix)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
GSM532877(GSM532877)
G691N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR553575(SRX182781)
source: Kidney. (Kidney)
............................................................................GTGCGGGAGCAACACGG............................................................................................................................................................. 1712.002.00---------------1.00-------------------------------1.00-----
...............GGCGGCCGCCGAGGCCGC......................................................................................................................................................................................................................... 181.000.00-------------------------------------------------1.00---
........................CGAGGCAGCTGGGGCGTGCG.............................................................................................................................................................................................................. 201.000.00------------------1.00----------------------------------
.......................................................................................................................................................................................................CGCCTCCGTCCCCACAA.................................. 171.000.00--------------------1.00--------------------------------
................................................................................................................................................................................................CCCGCCGCGCCTCCGTTG........................................ 181.000.00----------------------------------1.00------------------
.....................................................................................................................................CGCTCGGGGGTCCCGGT.................................................................................................... 171.000.00-----------------------1.00-----------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGGCCC.................................................................................. 191.000.00-----------1.00-----------------------------------------
..........GAGCCGGCGGCCGCCGGT.............................................................................................................................................................................................................................. 181.000.00--------------------------1.00--------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGGGGG.................................................................................. 191.000.00----1.00------------------------------------------------
.............CCGGCGGCCGCCGAGGCGCGC........................................................................................................................................................................................................................ 211.000.00------1.00----------------------------------------------
........................................................................................CGCACCGAGCCGGGTTCTG............................................................................................................................................... 191.000.00------1.00----------------------------------------------
.......................................................................................................GAGTGCGCGGTGTGGCCTA................................................................................................................................ 191.000.00------1.00----------------------------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGGGCG.................................................................................. 191.000.00----1.00------------------------------------------------
.....................................................................................................................................................GCGGGCGCCGGCGGGGCC................................................................................... 181.000.00-----------1.00-----------------------------------------
...............................................................................................................................................................GCGGGTTGGGGTCCCCGCG........................................................................ 191.000.00----1.00------------------------------------------------
.......................................................................................................................................................................................................................CCCGAGCCCCGGGCAG................... 1620.500.50--------------------------------------------------0.50--