ID: uc001kcu.2_intron_1_0_chr10_85936326_f.5p
GENE: (2)
chr10:85936276-85936525+


(3)
B-CELL
(1)
BRAIN
(2)
BREAST
(5)
CELL-LINE
(1)
CERVIX
(3)
HEART
(7)
LIVER
(1)
OTHER
(1)
RRP40.ip
(5)
SKIN
(1)
TESTES
(4)
UTERUS
(1)
XRN.ip

Sense strand
CAGGCTCTGCTGCCACCGAGTCCCTAGCCCCAACTCAACAAACCTGAAAGGTAAGTACCCCCACCTCGTCCAGACTGTGGGGCAGAAGTTCTACAGTGGCCATGGGACCAGCCACACACACTGATCAGCCCCCACCCATGGCTGGCATCAGGCTCTGGCTGGGAGGACATCTTTGTTTTGTTGATTAATTTGTTGACTCCCCCCCAAAAGTCAACAAATTAATCATTTTAAACTGAATACATTCTGCCAT
..............................................................................(((((.(((((......(((((..((....)))))))....)))..)).)))))......................................................................................................................
.............................................................................78.....................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
..................................................................................CAGAAGTTCTACAGTCCG......................................................................................................................................................1820.000.004.002.001.001.001.003.002.00----1.00----1.00-------1.001.001.00-1.00-------
..................................................................................CAGAAGTTCTACAGTCCGA.....................................................................................................................................................1916.000.001.003.001.00-4.001.00-3.001.00-1.00----------------1.00--------
..................................................................................CAGAAGTTCTACAGTCC.......................................................................................................................................................1711.000.003.001.00-1.00--1.00-1.00---1.00-1.00------1.00-------1.00------
..................................................................................CAGAAGTTCTACAGTGAC......................................................................................................................................................182.000.00---------2.00--------------------------
..................................................................................CAGAAGTTCTACAGTCACG.....................................................................................................................................................192.000.00---2.00--------------------------------
...........................................CTGAAAGGTAAGTACTGC.............................................................................................................................................................................................181.000.00----------------------1.00-------------
...............................................................................................................CCACACACACTGATCGCT.........................................................................................................................181.000.00-------------1.00----------------------
..................................................................................CAGAAGTTCTACAGTCCAG.....................................................................................................................................................191.000.00---1.00--------------------------------
..................................................................................CAGAAGTTCTACAGTCCCG.....................................................................................................................................................191.000.00--1.00---------------------------------
..................................................................................CAGAAGTTCTACAGTCGCG.....................................................................................................................................................191.000.00--1.00---------------------------------
..................................................................................CAGAAGTTCTACAGTCCA......................................................................................................................................................181.000.00-1.00----------------------------------
..................................................................................CAGAAGTTCTACAGTCCGC.....................................................................................................................................................191.000.00-1.00----------------------------------
.................................................................................................................................................CATCAGGCTCTGGCTGG........................................................................................1711.001.00------------------------------1.00-----
..................................................................................CAGAAGTTCTACAGTCCTG.....................................................................................................................................................191.000.00-------------------1.00----------------
..................................................................................CAGAAGTTCTACAGTCGC......................................................................................................................................................181.000.00--1.00---------------------------------
...............................................................................................................CCACACACACTGATCAGAGTA......................................................................................................................211.000.00--------------------1.00---------------
..........................................................................................................................................................CTGGCTGGGAGGACAT................................................................................1620.500.50-------------------------------0.50----
.............................................................................................................................................CTGGCATCAGGCTCTGG............................................................................................1750.200.20----------------------------------0.20-
.......................................................................................................................................................GCTCTGGCTGGGAGGAC..................................................................................1750.200.20-----------------------------------0.20

Antisense strand
CAGGCTCTGCTGCCACCGAGTCCCTAGCCCCAACTCAACAAACCTGAAAGGTAAGTACCCCCACCTCGTCCAGACTGTGGGGCAGAAGTTCTACAGTGGCCATGGGACCAGCCACACACACTGATCAGCCCCCACCCATGGCTGGCATCAGGCTCTGGCTGGGAGGACATCTTTGTTTTGTTGATTAATTTGTTGACTCCCCCCCAAAAGTCAACAAATTAATCATTTTAAACTGAATACATTCTGCCAT
..............................................................................(((((.(((((......(((((..((....)))))))....)))..)).)))))......................................................................................................................
.............................................................................78.....................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
.........................................................................................................................................................................................................................................TGAATACATTCTGCCAATAT 201.000.00------------------1.00-----------------
.........................................................................................................................................................................................................TTAATTTGTTGACTTTTGGGG............................ 2111.001.00---------------1.00--------------------
..................................................................................................GCCATGGGACCAGCCAGAG..................................................................................................................................... 191.000.00----------1.00-------------------------
..TAGGGACTCGGTGGCAGCAGAGCC................................................................................................................................................................................................................................ 2411.001.00-----------------------1.00------------
..................................................................................................GCCATGGGACCAGCCAGC...................................................................................................................................... 181.000.00-----------------1.00------------------
.......................................................................................................................................................GTCCTCCCAGCCAGAGC.................................................................................. 1750.400.40--------------------------------0.40---
............CTAGGGACTCGGTGG............................................................................................................................................................................................................................... 1540.250.25---------------------------------0.25--