ID: uc001kcs.1_intron_3_0_chr10_85903863_f.3p
GENE: GHITM(4)
chr10:85904431-85904680+


(1)
AGO2.ip 		(3)
B-CELL 		(2)
BREAST 		(8)
CELL-LINE 		(8)
HEART 		(4)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGTGCTTGTATGTTTTATCTCATTTAGTCCTTACAGTAACTCCCAAGTATGCATAATTATCATAATTATTTCCATGATAAATGAAGTGAATAAGATTTAAAGTGTAAAATGATTTATCCCGAGGTCGCCCAGCTAGTGTGTGACTCAACCAGAAATCAAATCTGTAATTTCATAGATTAATCATGTCATGTTTCTTACAGAATTTGGCCTCAGTATGTCAAGGATAGAATTCATTCCACCTATATGTACT
........................................................................................................................((.(((((.((.....)).)))))))...............((((((...(((.(((.......))))))....))))))..................................................
....................................................................................................................117................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
....................................................................................................................................CTAGTGTGTGACTCAACCAGAAATCAAATCTGTAATTTCATAGATTAATCATGTCATGTTTCTTACAG..................................................68116.0016.00-15.00---------------------------------1.00--
.....................................................................................................................................TAGTGTGTGACTCAACCAGAAATCAAATCTGTAATTTCATAGATTAATCATGTCATGTTTCTTACAG..................................................67113.0013.0013.00-------------------------------------
................................................................................................................................CCAGCTAGTGTGTGACTCAACCAGAAATCAAATCTGTAATTTCATAGATTAATCATGTCATGTTTCTTACAG..................................................7218.008.007.001.00------------------------------------
.................................................................................................................................CAGCTAGTGTGTGACTCAACCAGAAATCAAATCTGTAATTTCATAGATTAATCATGTCATGTTTCTTACAG..................................................7118.008.008.00-------------------------------------
..............................................................................................................................GCCCAGCTAGTGTGTGACTCAACCAGAAATCAAATCTGTAATTTCATAGATTAATCATGTCATGTTTCTTACAG..................................................7415.005.005.00-------------------------------------
....................................................................................................................................................................................................................GTATGTCAAGGATAGAATTCATTCC.............2513.003.00----1.00-----1.00-1.00-------------------------
............................................................................................................................................................................................................................AGGATAGAATTCATTCCACC..........2013.003.00-----1.00-----2.00--------------------------
...........................................................................................................................................................................................................................AAGGATAGAATTCATTCCACC..........2113.003.00--3.00-----------------------------------
...................................................................................................................................................................................................................AGTATGTCAAGGATAGAATT...................2012.002.00-------1.00--------1.00---------------------
..............................................................................................................................................................................................................................GATAGAATTCATTCCACC..........1812.002.00----------1.00----------1.00----------------
............................................................................................................................................................................................................................AGGATAGAATTCATTCCA............1821.501.50-------1.00----------------------------0.50-
.........................................................................................................................AGGTCGCCCAGCTAGTGCGTG............................................................................................................211.000.00-------------------------1.00------------
........................................................................................................................................................................................................................GTCAAGGATAGAATTCATTCCACC..........2411.001.00--1.00-----------------------------------
................................................................................................................................................................................................................CTCAGTATGTCAAGGATAGAATTCATTCC.............2911.001.00---1.00----------------------------------
.....................................................................................................................................................................................................................TATGTCAAGGATAGAATTCATT...............2211.001.00----1.00---------------------------------
...................................................................................................................................................................................................................AGTATGTCAAGGATAGAAT....................1911.001.00----------------------------------1.00---
...........................................................................................................................................................................................................................AAGGATAGAATTCATTCC.............1811.001.00-----1.00--------------------------------
..................................................................................................................................................................................................................CAGTATGTCAAGGATAGAATTCATTC..............2611.001.00------------------------------1.00-------
................................................................................................................................................................................................................CTCAGTATGTCAAGGATAGAAT....................2211.001.00-------------------1.00------------------
......................................................................................................................................................................................................................ATGTCAAGGATAGAATTCATTCCAC...........2511.001.00------------------1.00-------------------
.......................................................................................................................................................................................................................TGTCAAGGATAGAATTCATTCCACC..........2511.001.00----1.00---------------------------------
.....................................................................................................................................................................................................................TATGTCAAGGATAGAATTCATTCCACC..........2711.001.00-----1.00--------------------------------
.............................................................................................................................CGCCCAGCTAGTGTGTGACTCAACCAGAAATCAAATCTGTAATTTCATAGATTAATCATGTCATGTTTCTTACAG..................................................7511.001.00-------------1.00------------------------
.....................................................................................................................................................................................................................TATGTCAAGGATAGAATTCATTCC.............2411.001.00--1.00-----------------------------------
.................................................................................................................................................................................................................TCAGTATGTCAAGGATAGAATTCATTCC.............2811.001.00---1.00----------------------------------
....................................................................................................................................................................................................................GTATGTCAAGGATAGAAT....................1811.001.00--------1.00-----------------------------
....................................................................................................................................................................................................................GTATGTCAAGGATAGAATT...................1911.001.00-----------------1.00--------------------
................................................................................................................................................................................................................CTCAGTATGTCAAGGATAGAATTCATTCCAC...........3111.001.00---------1.00----------------------------
......................................................................................................................................................................................................................ATGTCAAGGATAGAATTCATTCCACC..........2611.001.00--------------------1.00-----------------
..........................................................................................................................................................................................................TTTGGCCTCAGTATGTCAAGGATA........................2411.001.00---------------------------------1.00----
.........................................................................................................................................................................................................................TCAAGGATAGAATTCATTCCACCTATATG....2911.001.00--------------------------1.00-----------
.................................................................................................................................CAGCTAGTGTGTGACTCAACC....................................................................................................2111.001.00--1.00-----------------------------------
...................................................................................................................................................................................................................AGTATGTCAAGGATAGAATTCA.................2211.001.00--------------1.00-----------------------
..............................................................................................................................................................................................................................GATAGAATTCATTCCACCT.........1911.001.00---------1.00----------------------------
......................................................................................................................................................................................................................ATGTCAAGGATAGAATTCT.................191.000.00---------------1.00----------------------
...................................................................................................................................................................................................................AGTATGTCAAGGATAGAATTC..................2111.001.00----1.00---------------------------------
......................................................................................................................................................................................................................ATGTCAAGGATAGAATTCATTCC.............2311.001.00--------1.00-----------------------------
.......................................................................................................................................................................................................................TGTCAAGGATAGAATTCATT...............2011.001.00---1.00----------------------------------
....................................................................................................................................................................................................................GTATGTCAAGGATAGAATTCATTCCACC..........2811.001.00--------------------------------1.00-----
...................................................................................................................................................................................................................AGTATGTCAAGGATAGAA.....................1811.001.00-------1.00------------------------------
........................................................................................................................................................................................................................GTCAAGGATAGAATTCATT...............1911.001.00---1.00----------------------------------
.................................................................................................................................................................................................................TCAGTATGTCAAGGATAGAATTC..................2311.001.00-----------------------------1.00--------
......................TTTAGTCCTTACAGTAACTCCCAAGTACGCA.....................................................................................................................................................................................................311.000.00------1.00-------------------------------
.......................................................................................................................................................................................................................TGTCAAGGATAGAATTCATTC..............2111.001.00-----1.00--------------------------------
...................................................................................................................................................................................................................AGTATGTCAAGGATAGAATTCATTCCACC..........2911.001.00---1.00----------------------------------
.....................................................................................................................................................................................CATGTCATGTTTCTTACAG..................................................1911.001.00-------------------------------1.00------
...................................................................................................................................................................................................................AGTATGTCAAGGATAGAATTCATTCCAC...........2811.001.00----------------------------1.00---------
........................................................................................................................................................................................................................GTCAAGGATAGAATTCAT................1811.001.00---------------------------1.00----------
...........................................................................................................................................................................................................................AAGGATAGAATTCATTC..............1720.500.50----0.50---------------------------------
............................................................................................................................................................................................................................AGGATAGAATTCATTCC.............1720.500.50---0.50----------------------------------
..............................................................................................................................................................................................................................GATAGAATTCATTCC.............1570.140.14----0.14---------------------------------
...........................................................................................................................................................................................................................AAGGATAGAATTCATT...............1680.120.12-------------------------------------0.12

Antisense strand
TGTGCTTGTATGTTTTATCTCATTTAGTCCTTACAGTAACTCCCAAGTATGCATAATTATCATAATTATTTCCATGATAAATGAAGTGAATAAGATTTAAAGTGTAAAATGATTTATCCCGAGGTCGCCCAGCTAGTGTGTGACTCAACCAGAAATCAAATCTGTAATTTCATAGATTAATCATGTCATGTTTCTTACAGAATTTGGCCTCAGTATGTCAAGGATAGAATTCATTCCACCTATATGTACT
........................................................................................................................((.(((((.((.....)).)))))))...............((((((...(((.(((.......))))))....))))))..................................................
....................................................................................................................117................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
...............................................................................................................................................................................ATTAATCATGTCATGAATG........................................................ 191.000.00----------------------1.00---------------
..................................CATACTTGGGAGTTACT....................................................................................................................................................................................................... 1711.001.00------------------------1.00-------------
............................................................................................................................................................................................................................AGGATAGAATTCATTATTT........... 191.000.00-----------------------1.00--------------
.....................................................................................................................CCCGAGGTCGCCCAGCTAC.................................................................................................................. 191.000.00------1.00-------------------------------
.....................................................................................................................CCCGAGGTCGCCCAGCTAGTCA............................................................................................................... 221.000.00------1.00-------------------------------