ID: uc001jwy.1_intron_0_0_chr10_76871537_f.5p
GENE: (1)
chr10:76871487-76871736+


(1)
AGO2.ip
(2)
B-CELL
(3)
BREAST
(16)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(1)
HELA
(1)
KIDNEY
(1)
LIVER
(1)
OTHER
(10)
SKIN
(1)
XRN.ip

Sense strand
GGGAGCTGAGGCTGAGGAGAGGGGAGCTTGGGGGGCGCCTGCTGCCAAGGGTGAGTGGGGAGTCTGGGATGGAGCCGGGGGCTGCCGAGGGACCGCGACCTGGAGGGGCCCCGGGGAGACGGTTGAGGGAACCGGGATAGTCAGCTCTGGAATGGAATCTGAAGCAAATGGAGGTTGTCGAACTGAGGGCCTGAAGGCTGAGGGATAAGTGGAGGCCGAGGAACGAGAGGGAGAGAGCGAGAGGGGGAGG
...............................................................................................................((((....(((((..((.((((......((..(((..(((......)))..)))..))...)))).)).)))))....)))).........................................................
..............................................................................................................111................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR040031(GSM532916)
G013T. (cervix)
SRR037931(GSM510469)
293GFP. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
................................................................................................................................................................................GTCGAACTGAGGGCC...........................................................15124.0024.00--6.004.003.00--3.001.00-1.00-2.00----1.00----1.00-------------1.00--1.00--------
............................................................................................................................................................................GGTTGTCGAACTGAGGGC............................................................1816.006.00-6.00----------------------------------------------
.............................................................................................................................................................TCTGAAGCAAATGGAGGT...........................................................................1816.006.006.00-----------------------------------------------
...................................................................................................................GAGACGGTTGAGGGAACCG....................................................................................................................1913.003.00-----3.00------------------------------------------
.....................................................................................................................................................................................ACTGAGGGCCTGAAGGCTGAGGGACAAG.........................................282.000.00------2.00-----------------------------------------
.........................................................................................................................................................................................AGGGCCTGAAGGCTGAGGGA.............................................2012.002.002.00-----------------------------------------------
.......................................................................GAGCCGGGGGCTGCCGAG.................................................................................................................................................................1812.002.00-------------------------1.00----1.00-----------------
...................................................................................................................................................................................................................................AGGGAGAGAGCGAGAGGGC....191.000.00-----------------------------------1.00------------
.....................................................................................................................................................................AAATGGAGGTTGTCGAAA...................................................................181.000.00----------------------------------------1.00-------
...............................................................................................................................................................................................TGAAGGCTGAGGGATAAGTGGAGGCCGAG..............................2911.001.00---------------1.00--------------------------------
.............................................................................................................................AGGGAACCGGGATAGA.............................................................................................................161.000.00-------------1.00----------------------------------
..............................................................................................................................................................................................................AAGTGGAGGCCGAGGAGGA.........................191.000.00---------1.00--------------------------------------
..................................................................................................................................................................................................AGGCTGAGGGATAAGTGG......................................1811.001.00--------------------------------------1.00---------
.......................................................................................................................................................ATGGAATCTGAAGCAAATGGA..............................................................................2111.001.00----------1.00-------------------------------------
............................................................................................................................................................ATCTGAAGCAAATGGAGGTTGTCGA.....................................................................2511.001.00----------------------------------1.00-------------
..................................................................................................................................................................................................................GGAGGCCGAGGAACGAGAGGG...................2111.001.00---------------------------------1.00--------------
......TGAGGCTGAGGAGAGCC...................................................................................................................................................................................................................................171.000.00------1.00-----------------------------------------
............................................................................GGGGGCTGCCGAGGGTTTG...........................................................................................................................................................191.000.00------------------------1.00-----------------------
......TGAGGCTGAGGAGAGGGGAA................................................................................................................................................................................................................................201.000.00-----------------------1.00------------------------
.......................................................TGGGGAGTCTGGGATGGAGCCG.............................................................................................................................................................................2211.001.00-------------------------------1.00----------------
.......................................................................................................................................................................................................................................AGAGAGCGAGAGGGGGCAGA201.000.00-----------------------------1.00------------------
...................................................................................................................................................................GCAAATGGAGGTTGTCGAACTGAGGGC............................................................2711.001.00----------------1.00-------------------------------
....................................................................................................................................................................................................................................GGGAGAGAGCGAGAGGGC....181.000.00--------------------1.00---------------------------
...........................................................................................ACCGCGACCTGGAGGACTG............................................................................................................................................191.000.00------------------1.00-----------------------------
........................................................................................................................................................................................................................................GAGAGCGAGAGGGGGGACC191.000.00---------------------1.00--------------------------
................................................................................................................................................................................................................................GAGAGGGAGAGAGCGAGAAAGG....221.000.00--------------------------1.00---------------------
.......................................................................................................................................................................................................................................AGAGAGCGAGAGGGGGAGTATT221.000.00-------------1.00----------------------------------
.........................................................................................................................................................................................................................GAGGAACGAGAGGGAGAGAAA............211.000.00----------------------------1.00-------------------
...................................................................................................................................CCGGGATAGTCAGCTCTG.....................................................................................................1811.001.00---------------------------1.00--------------------
..........................................................................................................................................................................GAGGTTGTCGAACTGACGTA............................................................201.000.00--------------------------------1.00---------------
.......................................................................................................................................................................................................GAGGGATAAGTGGAGGCCGAGGAA...........................2411.001.00-------------------------------------1.00----------
................................................................................................................................................................................................................................GAGAGGGAGAGAGCGAGTGGT.....211.000.00-------------------1.00----------------------------
...........................................................................................................GCCCCGGGGAGACGGGGCG............................................................................................................................191.000.00-----------------------------------------1.00------
........AGGCTGAGGAGAGGGGAG................................................................................................................................................................................................................................1820.500.50------------------------------------------0.50-----
.......................................................................................................................................................................................................................................AGAGAGCGAGAGGGGGA..1760.330.33--------0.17------0.17--------------------------------
..............................................................................................................................................AGCTCTGGAATGGAATC...........................................................................................1740.250.25----------------------------------------------0.25-
............................................................................................................................................TCAGCTCTGGAATGG...............................................................................................1570.140.14----------------0.14-------------------------------
...........................................................................CGGGGGCTGCCGAGG................................................................................................................................................................1580.120.12-----------------------------------------------0.12

Antisense strand
GGGAGCTGAGGCTGAGGAGAGGGGAGCTTGGGGGGCGCCTGCTGCCAAGGGTGAGTGGGGAGTCTGGGATGGAGCCGGGGGCTGCCGAGGGACCGCGACCTGGAGGGGCCCCGGGGAGACGGTTGAGGGAACCGGGATAGTCAGCTCTGGAATGGAATCTGAAGCAAATGGAGGTTGTCGAACTGAGGGCCTGAAGGCTGAGGGATAAGTGGAGGCCGAGGAACGAGAGGGAGAGAGCGAGAGGGGGAGG
...............................................................................................................((((....(((((..((.((((......((..(((..(((......)))..)))..))...)))).)).)))))....)))).........................................................
..............................................................................................................111................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR040031(GSM532916)
G013T. (cervix)
SRR037931(GSM510469)
293GFP. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
..................................................................................................................................................................................................................................GAGGGAGAGAGCGAGAGGGCT... 211.000.00--------1.00---------------------------------------
...............................................................................................................................................................................................................................CGAGAGGGAGAGAGCGAGAGGGCT... 241.000.00--------------1.00---------------------------------
...........CTGAGGAGAGGGGAGCTTGGA.......................................................................................................................................................................................................................... 211.000.00---------1.00--------------------------------------
...............GGAGAGGGGAGCTTGGCGAT....................................................................................................................................................................................................................... 201.000.00-----------1.00------------------------------------
...................................................................................................................................................................................................................................CCTCTCGCTCTCTCCCT...... 1740.750.75--------0.25-----------------------------------0.250.25--
...................................................................................................................................................................................................................................CCCTCTCGCTCTCTCCCT..... 1830.670.67--------------0.33----------------------------0.33----