| (1) BREAST | (10) CELL-LINE | (3) CERVIX | (1) FIBROBLAST | (2) LIVER | (2) OTHER | (1) SKIN |
| TAAGACTCTTAACAGTCAGGATGGCTTGATAACAAGAGGAGGGCAGTGGGAAAAAAAAACAAAACAAAACTTCATCCTTAGGCAACCAAATCTCTAATGTGTTTTGAGGTAGATAGAATGTTAAGGTGAGAGGAGGGGGAAAAAAAACTGTAGAAACAAACAGACAATCTCTTTCCTCTCCTCACCCTGGCCTGGCTCAGGTGGTGAATGACAAGATTGTGGCCAGCAACCTCGTGACAGGTCTACCCAA .....................................................................................................((((((.((.......)).))))))............................................................................................................................ .....................................................................................................102..............................................151................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR037937(GSM510475) 293cand2. (cell line) | SRR029054(GSM402329) MCF7_smallRNAseq. (cell line) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR040036(GSM532921) G243N. (cervix) | SRR189785 | SRR040008(GSM532893) G727N. (cervix) | SRR390723(GSM850202) total small RNA. (cell line) | SRR330868(SRX091706) tissue: skin psoriatic involveddisease state:. (skin) | TAX577579(Rovira) total RNA. (breast) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR037932(GSM510470) 293cand4_rep1. (cell line) | SRR040031(GSM532916) G013T. (cervix) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................GGAGGGGGAAAAAAAA....................................................................................................... | 16 | 0 | 79.00 | 79.00 | 30.00 | 20.00 | 15.00 | 14.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................GGAGGGGGAAAAAAA........................................................................................................ | 15 | 0 | 64.00 | 64.00 | 20.00 | 16.00 | 14.00 | 13.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..................................................................................................................................AGGAGGGGGAAAAAAAA....................................................................................................... | 17 | 0 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................GAGGGGGAAAAAAAAC...................................................................................................... | 16 | 0 | 2.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................AGGTAGATAGAATGTCTTG............................................................................................................................. | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | |
| ...................................................................................................................................GGAGGGGGAAAAAAAGA...................................................................................................... | 17 | 0 | 1.00 | 64.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................TGAGGTAGATAGAATGTTA............................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .AAGACTCTTAACAGTGCA....................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................TGTGGCCAGCAACCTCGTGACAGG......... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................AGGAGGGGGAAAAAA......................................................................................................... | 15 | 0 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................GTGGGAAAAAAAAACAAAAAAA....................................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................GAGGGCAGTGGGAAAAGGGC................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ..................................AGAGGAGGGCAGTGGCGC...................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................AGAGGAGGGGGAAAAAAAA....................................................................................................... | 19 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - |
| ..................................................................................................................................AGGAGGGGGAAAAAAAAC...................................................................................................... | 18 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 |
| TAAGACTCTTAACAGTCAGGATGGCTTGATAACAAGAGGAGGGCAGTGGGAAAAAAAAACAAAACAAAACTTCATCCTTAGGCAACCAAATCTCTAATGTGTTTTGAGGTAGATAGAATGTTAAGGTGAGAGGAGGGGGAAAAAAAACTGTAGAAACAAACAGACAATCTCTTTCCTCTCCTCACCCTGGCCTGGCTCAGGTGGTGAATGACAAGATTGTGGCCAGCAACCTCGTGACAGGTCTACCCAA .....................................................................................................((((((.((.......)).))))))............................................................................................................................ .....................................................................................................102..............................................151................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR037937(GSM510475) 293cand2. (cell line) | SRR029054(GSM402329) MCF7_smallRNAseq. (cell line) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR040036(GSM532921) G243N. (cervix) | SRR189785 | SRR040008(GSM532893) G727N. (cervix) | SRR390723(GSM850202) total small RNA. (cell line) | SRR330868(SRX091706) tissue: skin psoriatic involveddisease state:. (skin) | TAX577579(Rovira) total RNA. (breast) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR037932(GSM510470) 293cand4_rep1. (cell line) | SRR040031(GSM532916) G013T. (cervix) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................GAAAAAAAAACAAAACAAAAGGTT................................................................................................................................................................................. | 24 | 3.00 | 0.00 | - | - | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................GAAAAAAAAACAAAACAAAACTTTC................................................................................................................................................................................ | 25 | 3.00 | 0.00 | - | - | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................AAAAAAAAACAAAACAAAACTTTGCT.............................................................................................................................................................................. | 26 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................GGAAAAAAAAACAAAACAATTTG................................................................................................................................................................................... | 23 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................GAAAAAAAAACAAAACAAAGGTT.................................................................................................................................................................................. | 23 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................GGAAAAAAAAACAAAACAATCCT................................................................................................................................................................................... | 23 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................GGAAAAAAAAACAAAACAAAACTAGG................................................................................................................................................................................ | 26 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................GGGAAAAAAAAACAAAACAAAAGGTC................................................................................................................................................................................. | 26 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................TGTTTTGAGGTAGATAGACG................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................AAAAAAACAAAACAAAACTTCCC............................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................GGGAAAAAAAAACAAAACAAAACAG.................................................................................................................................................................................. | 25 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................ACAATCTCTTTCCTCTATAG................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...............................................GGGAAAAAAAAACAAAACAAAACTGGGC............................................................................................................................................................................... | 28 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................GGAAAAAAAAACAAAACAAAACGGT................................................................................................................................................................................. | 25 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................GAAAAAAAAACAAAACAAAAGGTC................................................................................................................................................................................. | 24 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................AGACAATCTCTTTCCTCCGTT.................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................GGGAAAAAAAAACAAAACAAAACTGGT................................................................................................................................................................................ | 27 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................GAAAAAAAAACAAAACAAAAGGC.................................................................................................................................................................................. | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................AAAAACAAAACAAAACTCTGC............................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................TGAGAGGAGGGGGAATCGC......................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ....................................................AAAAAAACAAAACAAAACTCTTC............................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................GAAAAAAAAACAAAACAAAACGGTT................................................................................................................................................................................ | 25 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................GGAAAAAAAAACAAAACAAAAGGTA................................................................................................................................................................................. | 25 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................GGAAAAAAAAACAAAACAAAACTTGGC............................................................................................................................................................................... | 27 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................GAAAAAAAAACAAAACAAAAGGG.................................................................................................................................................................................. | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................AGGAGGGGGAAAAAAAGTTG.................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................AAAAAAACAAAACAAAACTCGGG............................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................TTAAGGTGAGAGGAGAAG................................................................................................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ...............................................GGGAAAAAAAAACAAAACACCCG.................................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................AGACAATCTCTTTCCTCAGGT.................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |