ID: uc001jss.1_intron_8_0_chr10_73973090_r.5p
GENE: (1)
chr10:73975340-73975589-


(4)
B-CELL 		(2)
BRAIN 		(1)
BREAST 		(10)
CELL-LINE 		(2)
CERVIX 		(2)
FIBROBLAST 		(4)
HEART 		(2)
HELA 		(1)
KIDNEY 		(2)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
TGCAGAAAGACACAGCTTTCCTCTTCCTCTCCAAACCACCTCGAAGCAGGGTTAAGTTGGTTATTCCTCTCTTTCCTTCCGAGCAGTCTCGTAGCGCAGGGCCATGTAGGACAGGTAGATGCTGCATTTGCTGTCTCCGCGACAACTGCCTGTTCTTCCGGAGCTCGTGGTCTGAGGGCCCGACTTTCATCTTAGTCTGTTTTTGTGGGGAACATTTTTTTTTTAAGCTTTTCCTTTGAAAGTCTTTTTT
..................................................................................................(((((....(((((((((((.....((....)).(((.....)))..)))))))))))..((((........))))..))))).....................................................................
.............................................................................................94.......................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR040017(GSM532902)
G645T. (cervix)
..................................................................................................GGGCCATGTAGGACAGG.......................................................................................................................................17121.0021.0021.00----------------------------------
..................................................................................................GGGCCATGTAGGACAGGTAGA...................................................................................................................................2114.004.00-3.00-------1.00-------------------------
.......................................................................................................ATGTAGGACAGGTAGATG.................................................................................................................................1813.003.00--3.00--------------------------------
.................................................................................................................................................................AGCTCGTGGTCTGAGGGC.......................................................................1813.003.003.00----------------------------------
..................................................................................................GGGCCATGTAGGACAGGTA.....................................................................................................................................1912.002.00-----2.00-----------------------------
.......AGACACAGCTTTCCTAGGG................................................................................................................................................................................................................................192.000.00--------2.00--------------------------
..................................................................................................GGGCCATGTAGGACAGGTAGATG.................................................................................................................................2312.002.00-1.00-----1.00---------------------------
.................................................................................................AGGGCCATGTAGGACAGGTAG....................................................................................................................................2112.002.00---2.00-------------------------------
..................................................................................................GGGCCATGTAGGACAGGTAGATGCTGC.............................................................................................................................2712.002.00-1.00-----------------------------1.00---
............................................................................................AGCGCAGGGCCATGTAGG............................................................................................................................................1812.002.00-2.00---------------------------------
........................................................................................................................................................................GGTCTGAGGGCCCGAAGT................................................................181.000.00-----------------1.00-----------------
....................................................................................................GCCATGTAGGACAGGTAGATGCTGCATT..........................................................................................................................2811.001.00-------------------1.00---------------
..................................................................................................GGGCCATGTAGGACAGGTAGATGCT...............................................................................................................................2511.001.00----------------1.00------------------
.....................................................................................GTCTCGTAGCGCAGGGCCATGTAGGA...........................................................................................................................................2611.001.00-1.00---------------------------------
...................................................................................................GGCCATGTAGGACAGCAGC....................................................................................................................................191.000.00--------------1.00--------------------
..................................................................................GCAGTCTCGTAGCGCAGGGCCATG................................................................................................................................................2411.001.00---1.00-------------------------------
.......................................................................................................ATGTAGGACAGGTAGATGCTG..............................................................................................................................2111.001.00----1.00------------------------------
....................................................................................................GCCATGTAGGACAGGTAGA...................................................................................................................................1911.001.00----------------------------1.00------
..............................................................................................CGCAGGGCCATGTAGGACAGG.......................................................................................................................................2111.001.00---------1.00-------------------------
..........CACAGCTTTCCTCTTCCTCTC...........................................................................................................................................................................................................................2111.001.00-------------1.00---------------------
...................................CCACCTCGAAGCAGGGTTAAGTTGGT.............................................................................................................................................................................................2611.001.00-1.00---------------------------------
...............................................................................................GCAGGGCCATGTAGGACAGGTAGAT..................................................................................................................................2511.001.00--------------------------1.00--------
...............................................................................................................CAGGTAGATGCTGCATTTGCTGTCTCCGCG.............................................................................................................3011.001.00------------1.00----------------------
........................................................................................................TGTAGGACAGGTAGATGCTCTG............................................................................................................................221.000.00------1.00----------------------------
......................................................................................................CATGTAGGACAGGTAGATGC................................................................................................................................2011.001.00----1.00------------------------------
......................................................................................................................................................................................................................TTTTTTTTTTAAGCTTTTGGGC..............221.000.00--------------------1.00--------------
..................................................................................................GGGCCATGTAGGACAGGTAG....................................................................................................................................2011.001.00------------------1.00----------------
....................................................................................................GCCATGTAGGACAGGTAGATGC................................................................................................................................2211.001.00-------------------------1.00---------
.............................................................................................GCGCAGGGCCATGTAGGACAGG.......................................................................................................................................2211.001.00-1.00---------------------------------
....................................................................................................GCCATGTAGGACAGGT......................................................................................................................................1611.001.00----------1.00------------------------
..................................................................................................GGGCCATGTAGGACAGGTAGATGCTGCA............................................................................................................................2811.001.00---------------1.00-------------------
........................................................................................................TGTAGGACAGGTAGATGCTGCAT...........................................................................................................................2311.001.00---------------------1.00-------------
......................................................................................................CATGTAGGACAGGTAGATG.................................................................................................................................1911.001.00------------------------------1.00----
...AGAAAGACACAGCTTTCCTCTTCC...............................................................................................................................................................................................................................2411.001.00-----------------------------1.00-----
...................................................................................................................................................................................................................ACATTTTTTTTTTAAGCTCT...................201.000.00--------------------------------1.00--
........................................................................................................TGTAGGACAGGTAGATG.................................................................................................................................1720.500.50---------------------------------0.50-

Antisense strand
TGCAGAAAGACACAGCTTTCCTCTTCCTCTCCAAACCACCTCGAAGCAGGGTTAAGTTGGTTATTCCTCTCTTTCCTTCCGAGCAGTCTCGTAGCGCAGGGCCATGTAGGACAGGTAGATGCTGCATTTGCTGTCTCCGCGACAACTGCCTGTTCTTCCGGAGCTCGTGGTCTGAGGGCCCGACTTTCATCTTAGTCTGTTTTTGTGGGGAACATTTTTTTTTTAAGCTTTTCCTTTGAAAGTCTTTTTT
..................................................................................................(((((....(((((((((((.....((....)).(((.....)))..)))))))))))..((((........))))..))))).....................................................................
.............................................................................................94.......................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR040017(GSM532902)
G645T. (cervix)
............................................ACCAACTTAACCCTGCT............................................................................................................................................................................................. 1711.001.00------1.00----------------------------
........................................................................................................................................................AGACCACGAGCTCCGGAAGAA............................................................................. 2111.001.00-------1.00---------------------------
.........AGGAAGAGGAAAGCTGTGT.............................................................................................................................................................................................................................. 1911.001.00------------------------1.00----------
..................................................GTTAAGTTGGTTATTAC....................................................................................................................................................................................... 171.000.00----------------------1.00------------
...........................................AAGCAGGGTTAAGTTTGGA............................................................................................................................................................................................ 191.000.00-----------------------1.00-----------
...............CTTTCCTCTTCCTCTCGGGC....................................................................................................................................................................................................................... 201.000.00---------------------------1.00-------
.....................................................................................................................................................GACCACGAGCTCCGGAAGAACAG.............................................................................. 2311.001.00-----------1.00-----------------------
............................................................GAAGGAAAGAGAGGAATAA........................................................................................................................................................................... 1930.330.33----------------------------------0.33