ID: uc001jsr.1_intron_1_0_chr10_73862726_r.5p
GENE: (6)
chr10:73887640-73887889-


(1)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(13)
CELL-LINE 		(1)
HEART 		(3)
LIVER 		(3)
OTHER 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AATATATCTTCAAGGAAAGAGAATCATTTGATGGCCGAAATATTTTAAAGGTCAGTATGAAGCAGAGTGAATTGGAAATCCTTTGGCACATGTCCTAAATAAGGCAGGAAAACAAGTAGTTCTCCGTATATTTCTTCATACTTCTTCATACTTTTTCTCATACTTTTTTTTTTTAATTATCTAAAGGGAAAGAGAGGAAAAGTAGCTGGTCCTCTTAAGGCTTTGGCACTTCTAGAGTATTTGAAATTGG
.....................................................(((((((((.((.((((...((((((((((.(((....)))......))))..(((.(((.....))).)))....)))))))))).)).)))))))))..................................................................................................
..................................................51.................................................................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189782SRR189785SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343334SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029128(GSM416757)
H520. (cell line)
.............................................................................................................................................................TCATACTTTTTTTTTTTAAAG........................................................................219.000.005.001.002.001.00-------------------------
...............................................................................................................................................................ATACTTTTTTTTTTTAATTTCTG....................................................................238.000.003.002.001.002.00-------------------------
..............................................................................................................................................................CATACTTTTTTTTTTTAAAG........................................................................207.000.002.00-3.002.00-------------------------
............AGGAAAGAGAATCATTTGATGGCC......................................................................................................................................................................................................................2415.005.00--------5.00--------------------
..................................................GTCAGTATGAAGCAGAGTGA....................................................................................................................................................................................2014.004.00-----4.00-----------------------
.............................................................................................................................................................TCATACTTTTTTTTTTTCTAG........................................................................214.000.003.001.00---------------------------
..................................CCGAAATATTTTAAACTGT.....................................................................................................................................................................................................194.000.00-------4.00---------------------
.............................................................................................................................................................TCATACTTTTTTTTTTTAAAAG.......................................................................224.000.001.00-2.00-1.00------------------------
.............................................................................................................................................................TCATACTTTTTTTTTTTCTTG........................................................................214.000.00-3.001.00--------------------------
.............................................................................................................................................................TCATACTTTTTTTTTTTCTG.........................................................................204.000.00-3.00-------1.00-------------------
..............................................................................................................................................................CATACTTTTTTTTTTTAATG........................................................................203.000.00-1.001.001.00-------------------------
.............................................................................................................................................................TCATACTTTTTTTTTCACT..........................................................................193.000.00----3.00------------------------
.............................................................................................................................................................TCATACTTTTTTTTTTTCG..........................................................................193.000.00-2.001.00--------------------------
..................................................................................................................................................................CTTTTTTTTTTTAATTATCTCTTG................................................................2463.000.170.670.67-1.330.33------------------------
..................................................GTCAGTATGAAGCAGAGT......................................................................................................................................................................................1812.002.00-----2.00-----------------------
...............................................................................................................................................................ATACTTTTTTTTTTTAATTAATAG...................................................................242.000.002.00----------------------------
...........AAGGAAAGAGAATCATTTG............................................................................................................................................................................................................................1912.002.00------------2.00----------------
.................................................................................................................................................................ACTTTTTTTTTTTAATTCTTC....................................................................211.000.00--1.00--------------------------
...............................................................................................................................................................ATACTTTTTTTTTTTAATAATG.....................................................................221.000.00-1.00---------------------------
..........CAAGGAAAGAGAATCATTTGAT..........................................................................................................................................................................................................................2211.001.00-------------------1.00---------
............................................................................................................................................................................................................................CTTTGGCACTTCTAGAATA...........191.000.00--------------------1.00--------
..............................................................CAGAGTGAATTGGAAAGT..........................................................................................................................................................................181.000.00----------------------1.00------
.........TCAAGGAAAGAGAATCATTTGATGGCCG.....................................................................................................................................................................................................................2811.001.00---------------------------1.00-
.............................................................................................................................................................TCATACTTTTTTTTTTTATAT........................................................................211.000.001.00----------------------------
...............................................................................................................................................................ATACTTTTTTTTTTTATCTG.......................................................................201.000.00--1.00--------------------------
...............................................................................................................................................................ATACTTTTTTTTTTTAATTAATAT...................................................................241.000.001.00----------------------------
................................................................GAGTGAATTGGAAATTTCC.......................................................................................................................................................................191.000.00-------------------------1.00---
........................................................................................................................................................TTTTCTCATACTTTTTTTATTT............................................................................221.000.00----1.00------------------------
..............................................................................................................................................................CATACTTTTTTTTTTTATTTG.......................................................................211.000.00---1.00-------------------------
..................................CCGAAATATTTTAAACTTT.....................................................................................................................................................................................................191.000.00-------1.00---------------------
.......CTTCAAGGAAAGAGACAG.................................................................................................................................................................................................................................181.000.00----------1.00------------------
.............................................................................................................................................................TCATACTTTTTTTTTCCG...........................................................................181.000.00-1.00---------------------------
............................................................................................................................................................CTCATACTTTTTTTTTTTTAAG........................................................................221.000.00-1.00---------------------------
...........AAGGAAAGAGAATCATTTGATGGCCG.....................................................................................................................................................................................................................2611.001.00--------------------------1.00--
.............................................................................................................................................................TCATACTTTTTTTTTTTAACTG.......................................................................221.000.001.00----------------------------
.............................................................................................................................................................TCATACTTTTTTTTTTTCACT........................................................................211.000.00----1.00------------------------
................................................................................................................................................................TACTTTTTTTTTTTAATTTCTG....................................................................221.000.00---1.00-------------------------
......................................................................................................................................................CTTTTTCTCATACTTACAG.................................................................................191.000.00-------------1.00---------------
..............................................................................................................................................................CATACTTTTTTTTTTTAATTAATAG...................................................................251.000.001.00----------------------------
.......................................................................................................................................................TTTTTCTCATACTTTTTTTTCTG............................................................................231.000.00-1.00---------------------------
.............................................................................................................................................................................................................................TTTGGCACTTCTAGAGTAG..........191.000.00------1.00----------------------
..................................................................................................................................................CATACTTTTTCTCATACTTTG...................................................................................211.000.00-----------1.00-----------------
.............................................................................................................................................................TCATACTTTTTTTTTCTCC..........................................................................191.000.00----1.00------------------------
...............AAAGAGAATCATTTGAAG.........................................................................................................................................................................................................................181.000.00------------------1.00----------
.........................................................TGAAGCAGAGTGAATAGCT..............................................................................................................................................................................191.000.00------------------------1.00----
...............................................................................................................................................................ATACTTTTTTTTTTTAATTTCTT....................................................................231.000.00---1.00-------------------------
...............................................................................................................................................................ATACTTTTTTTTTTTAATTCCTG....................................................................231.000.00--1.00--------------------------
........TTCAAGGAAAGAGAATCATTTGA...........................................................................................................................................................................................................................2311.001.00-----1.00-----------------------
................................................................................................................................TATTTCTTCATACTTCTTTTTC....................................................................................................221.000.00--------------1.00--------------
..........CAAGGAAAGAGAATCATTTGATGGCC......................................................................................................................................................................................................................2611.001.00---------------1.00-------------
......TCTTCAAGGAAAGAGAATCATTTGATGGC.......................................................................................................................................................................................................................2911.001.00-----------------------1.00-----
................................................................................................................CAAGTAGTTCTCCGTTTG........................................................................................................................181.000.00------1.00----------------------
..........CAAGGAAAGAGAATCATTTGATGGCCGA....................................................................................................................................................................................................................2811.001.00-----------------1.00-----------
.........................................................................................................................................................................TTTTTAATTATCTAAACAAG.............................................................201.000.00------1.00----------------------
..........................................................................................................................................................TTCTCATACTTTTTTTTTTTTCTT........................................................................241.000.00---1.00-------------------------
...............................................................................................................................................CTTCATACTTTTTCTCACAG.......................................................................................201.000.00-----------1.00-----------------
...........................................................................................................................................................TCTCATACTTTTTTTTTTTTTTG........................................................................231.000.00-1.00---------------------------
..................................................GTCAGTATGAAGCAGAGTGAATTGGA..............................................................................................................................................................................2611.001.00----------------1.00------------
....................................................................................................................................................................TTTTTTTTTTAATTATCTAATG................................................................221.000.00------1.00----------------------
............AGGAAAGAGAATCATTTGATGGC.......................................................................................................................................................................................................................2311.001.00----------1.00------------------
.............................................................................................................................................................TCATACTTTTTTTTTTTCCCG........................................................................211.000.00---------1.00-------------------
.....................................................................................................................................................................TTTTTTTTTAATTATCTAATG................................................................211.000.00------1.00----------------------
..........CAAGGAAAGAGAATCATTTGATGGCCG.....................................................................................................................................................................................................................2711.001.00---------------------1.00-------
...............................................................................................................................................................ATACTTTTTTTTTTTAATTTTAT....................................................................231.000.001.00----------------------------
...................................................................................................................................................................TTTTTTTTTTTAATTATCTAAATG...............................................................241.000.00-1.00---------------------------
.............................................................................................................................................................TCATACTTTTTTTTTTTGG..........................................................................191.000.00---1.00-------------------------
............................................................................................................................................................CTCATACTTTTTTTTTTTTTTC........................................................................221.000.00---------1.00-------------------
..................................................................................................................................................................CTTTTTTTTTTTAATTATCTCTGG................................................................2460.330.170.17--0.17-------------------------
........................................................................................................................................................................................AGGGAAAGAGAGGAAAAG................................................1880.250.25----------------------------0.25
...................................................................................................TAAGGCAGGAAAACAAGT.....................................................................................................................................1840.250.25----------0.25------------------
.............................................................................................................................................................TCATACTTTTTTTTTTTAATT........................................................................2150.200.20---0.20-------------------------
..................................................................................................................................................................CTTTTTTTTTTTAATTATCTCTT.................................................................2360.170.17---0.17-------------------------
..................................................................................................................................................................CTTTTTTTTTTTAATTATCT....................................................................2060.170.17---0.17-------------------------
..............................................................................................................................................................CATACTTTTTTTTTTTAATT........................................................................2060.170.17--0.17--------------------------
..................................................................................................................................................................CTTTTTTTTTTTAATTATCTCTTT................................................................2460.170.17---0.17-------------------------
..............................................................................................................................................................CATACTTTTTTTTTTTAATTTG......................................................................2260.170.170.17----------------------------
..................................................................................................................................................................CTTTTTTTTTTTAATTATCTCTTA................................................................2460.170.17-0.17---------------------------
.............................................................................................................................................................TCATACTTTTTTTTTTTAAT.........................................................................2060.170.17----0.17------------------------
..............................................................................................................................................................CATACTTTTTTTTTTTAATTTTAA....................................................................2460.170.17--0.17--------------------------

Antisense strand
AATATATCTTCAAGGAAAGAGAATCATTTGATGGCCGAAATATTTTAAAGGTCAGTATGAAGCAGAGTGAATTGGAAATCCTTTGGCACATGTCCTAAATAAGGCAGGAAAACAAGTAGTTCTCCGTATATTTCTTCATACTTCTTCATACTTTTTCTCATACTTTTTTTTTTTAATTATCTAAAGGGAAAGAGAGGAAAAGTAGCTGGTCCTCTTAAGGCTTTGGCACTTCTAGAGTATTTGAAATTGG
.....................................................(((((((((.((.((((...((((((((((.(((....)))......))))..(((.(((.....))).)))....)))))))))).)).)))))))))..................................................................................................
..................................................51.................................................................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189782SRR189785SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343334SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR029128(GSM416757)
H520. (cell line)
..............................................................................................................................................................CATACTTTTTTTTTTTACTAG....................................................................... 211.000.00-------1.00---------------------
......................................................................................................................................................................................AAAGGGAAAGAGAGGAAATATG.............................................. 221.000.00-1.00---------------------------
...............AAAGAGAATCATTTGAATC........................................................................................................................................................................................................................ 191.000.00------1.00----------------------
......................................................................................................................................................................................AAAGGGAAAGAGAGGAAATTTA.............................................. 221.000.00---------1.00-------------------