ID: uc001jmp.1_intron_2_0_chr10_64975378_r.3p
GENE: JMJD1C(3)
chr10:64975328-64975577-


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(2)
B-CELL 		(5)
BRAIN 		(7)
BREAST 		(13)
CELL-LINE 		(3)
HEART 		(10)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(2)
UTERUS

Sense strand
TCTTATAAATTAGGGATCCCAAGCTGATTTCTAAACATTTCTACTGAGTAAAGAAATTATACCAAATATTTGATTAGCTCATTCTATTTAATTTTTGTTTTTGTTTTGTATCATGGATTAGGTACTAGAACCACAGAATGTCGATCCTTCTATGGTTCAAATGACCTTTCTAGATGATGTTGTTCACTCTTTGTTAAAAGGTGAAAATATTGGCATTACATCACGACGCAGGTCTCGTGCCAATCAAAAC
.......................................................................................................................((((....((((((.((((.........)))).)))))).....))))....((((((......))).)))............................................................
......................................................................................................................119......................................................................192........................................................
SizePerfect hitTotal NormPerfect NormTAX577739(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...........................................................................................................................ACTAGAACCACAGAATGTCGATC........................................................................................................23116.0016.001.00-------3.001.003.00----2.00----------------1.00----1.00------------1.00-1.00---1.00-1.00-
...........................................................................................................................ACTAGAACCACAGAATGTCGAT.........................................................................................................22112.0012.00-2.00------1.00--3.00--2.00------------1.00---1.00-------------------1.00-1.00------
...........................................................................................................................ACTAGAACCACAGAATGTCGATCC.......................................................................................................2419.009.001.002.004.00-------------------------------------------1.00----------1.00--
...........................................................................................................................ACTAGAACCACAGAATGTCG...........................................................................................................2017.007.00-------4.00--------1.00---2.00---------------------------------------
...........................................................................................................................ACTAGAACCACAGAATGTCGATCCT......................................................................................................2517.007.005.00------------------------1.00--------------1.00-------------------
...........................................................................................................................ACTAGAACCACAGAATGTCGA..........................................................................................................2117.007.00-----------------2.00-2.00---1.00--------------------1.00----1.00----------
...........................................................................................................................................................................AGATGATGTTGTTCACT..............................................................1714.004.00------4.00-----------------------------------------------------
.............................................................................CTCATTCTATTTAATTTTTGTT.......................................................................................................................................................2213.003.00----3.00-------------------------------------------------------
...........................................................................................................................ACTAGAACCACAGAATGTCGATA........................................................................................................2313.0012.00---------2.00--------------------------------------------1.00-----
...........................................................................................................................................................................AGATGATGTTGTTCACTCTTTG.........................................................2212.002.00---1.00--------1.00-----------------------------------------------
...........................................................................................................................................................................AGATGATGTTGTTCACTCT............................................................1912.002.00---1.00-----------------1.00--------------------------------------
...........................................................................................................................................................................AGATGATGTTGTTCACTC.............................................................1812.002.00---1.00--------------1.00-----------------------------------------
...........................................................................................................................................................................................................AAAATATTGGCATTACATCACG.........................2212.002.00-------------2.00----------------------------------------------
......................................................................................................................................................................................................................ATTACATCACGACGCAGGTA................201.000.00--------------------------1.00---------------------------------
...............................................................................................................................................................AATGACCTTTCTAGATGATG.......................................................................2011.001.00-----1.00------------------------------------------------------
...............................................................................................................................................................................................TGTTAAAAGGTGAAAATAT........................................1911.001.00-----1.00------------------------------------------------------
.............................................................................................................................TAGAACCACAGAATGTCGATCC.......................................................................................................2211.001.00---1.00--------------------------------------------------------
.................................................................................................................TGGATTAGGTACTAGAACCACAGA.................................................................................................................2411.001.00-----1.00------------------------------------------------------
..........................................................................................................................TACTAGAACCACAGAATGTCGA..........................................................................................................2211.001.00-1.00----------------------------------------------------------
.....................................................................................................................................................................CTTTCTAGATGATGTTGTTCACT..............................................................2311.001.00----------------------------------1.00-------------------------
..............................................................................................TTGTTTTTGTTTTGTATCATGGATTAG.................................................................................................................................2711.001.00-----------------------------------1.00------------------------
............................................................................................................................CTAGAACCACAGAATGT.............................................................................................................1711.001.00-------------------------------------------1.00----------------
.........................................................................................................................GTACTAGAACCACAGAATGTCGATCC.......................................................................................................2611.001.00------------------------------1.00-----------------------------
.........................................................................................................................................ATGTCGATCCTTCTATGGT..............................................................................................1911.001.00------------------------------------------------1.00-----------
...........................................................................................................................................................................AGATGATGTTGTTCACTCTT...........................................................2011.001.00----------------------------1.00-------------------------------
...............................................................................................................................GAACCACAGAATGTCGATCC.......................................................................................................2011.001.00------------------------1.00-----------------------------------
.......................................................................................................................AGGTACTAGAACCACAGAATGT.............................................................................................................2211.001.00---1.00--------------------------------------------------------
.............................................................................CTCATTCTATTTAATTTTTGTTTTTGTA.................................................................................................................................................281.000.00----1.00-------------------------------------------------------
.........................................................................................AATTTTTGTTTTTGTTTCTTG............................................................................................................................................211.000.00---------------------------------------------1.00--------------
.............................................................................................................................TAGAACCACAGAATGTCGATCCT......................................................................................................2311.001.00------------------1.00-----------------------------------------
................................................................................................................................AACCACAGAATGTCGATCT.......................................................................................................191.000.00-----------------------------------------1.00------------------
......................................................................................................................................................................TTTCTAGATGATGTTGTTCACT..............................................................2211.001.00-----1.00------------------------------------------------------
............................................................................................................................CTAGAACCACAGAATGTCGA..........................................................................................................2011.001.00----------------1.00-------------------------------------------
...........................................................................................................................ACTAGAACCACAGAATGTCGATCCTT.....................................................................................................2611.001.001.00-----------------------------------------------------------
...........................................................................................................................ACTAGAACCACAGAATGTCGATCT.......................................................................................................2411.0016.00--1.00---------------------------------------------------------
..........................................................................................................................TACTAGAACCACAGAATG..............................................................................................................1811.001.00-------------------------------------------------------1.00----
.............................................................................CTCATTCTATTTAATTCTC..........................................................................................................................................................191.000.00-----------------------------------------------------------1.00
........................................................................................................................GGTACTAGAACCACAGAATGTC............................................................................................................2211.001.00---------------------1.00--------------------------------------
...................................................................................CTATTTAATTTTTGTAGAG....................................................................................................................................................191.000.00------------------------------------------1.00-----------------
........................................................................................................................GGTACTAGAACCACAGAATGTCG...........................................................................................................2311.001.00---------------------------------1.00--------------------------
..........................................................................................ATTTTTGTTTTTGTTTTGTAGCCG........................................................................................................................................241.000.00----------------------1.00-------------------------------------
..........................................................................................................................TACTAGAACCACAGAATGTCGATCC.......................................................................................................2511.001.00-----------------------------1.00------------------------------
..........................................................................................................................................................GTTCAAATGACCTTTCTAGATGATGTTGT...................................................................2911.001.00---------------------------------------1.00--------------------
.................................................................................................................................................CCTTCTATGGTTCAAATGACCTTTC................................................................................2511.001.00-----------------------------------------------1.00------------
.......................................................................................................................AGGTACTAGAACCACAGAATGTCGAAAA.......................................................................................................281.000.00--------------------------------------1.00---------------------
....ATAAATTAGGGATCCAAA....................................................................................................................................................................................................................................181.000.00------------------------------------1.00-----------------------
.....................................................................................................................TTAGGTACTAGAACCACAGAATGTC............................................................................................................2511.001.00------------1.00-----------------------------------------------
...........................................................................................................................................................................AGATGATGTTGTTCACTCTTT..........................................................2111.001.00------------1.00-----------------------------------------------
.................................................................................TTCTATTTAATTTTTGTTTTTGTTTTGCATC..........................................................................................................................................311.000.00----------------------1.00-------------------------------------

Antisense strand
TCTTATAAATTAGGGATCCCAAGCTGATTTCTAAACATTTCTACTGAGTAAAGAAATTATACCAAATATTTGATTAGCTCATTCTATTTAATTTTTGTTTTTGTTTTGTATCATGGATTAGGTACTAGAACCACAGAATGTCGATCCTTCTATGGTTCAAATGACCTTTCTAGATGATGTTGTTCACTCTTTGTTAAAAGGTGAAAATATTGGCATTACATCACGACGCAGGTCTCGTGCCAATCAAAAC
.......................................................................................................................((((....((((((.((((.........)))).)))))).....))))....((((((......))).)))............................................................
......................................................................................................................119......................................................................192........................................................
SizePerfect hitTotal NormPerfect NormTAX577739(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................................GAGTAAAGAAATTATTCTA.......................................................................................................................................................................................... 191.000.00----1.00-------------------------------------------------------