ID: uc001jci.1_intron_3_0_chr10_45959776_r.5p
GENE: MARCH8(3)
chr10:45984615-45984864-


(1)
B-CELL 		(1)
BRAIN 		(8)
CELL-LINE 		(1)
HEART 		(2)
LIVER 		(1)
OTHER 		(1)
TESTES 		(1)
XRN.ip

Sense strand
ATGAGAAGACTTTGGGACATTTCATGAGTCATTCAAGCAACATTTCTAAGGTAGAGTGCCACTGAAAAATGTTATTTATTACCTTGAGTCTTTTCTGTTCTTATGCCTTACATGTGTTTATACTCTTTTTTTTTTTTTTGAAAAGACGTTAGAGTTCTTGATACATTTCTGTAATCTGTTCTGGGACCATAAGAGGTATGTGGCAGTTACATTTTTCTGGTAAGGCAATTTTGAGTGTGTGTTGGGGGAA
....................................................((((((....((((..((((.............(((....)))..............))))...))))))))))..(((((((....)))))))........................................................................................................
..................................................51..............................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCTTG...........................................................................................................2463.000.009.003.0027.0021.002.001.00-----------
.......................................................................................................................ATACTCTTTTTTTTTTTTTCG..............................................................................................................2126.000.005.007.007.005.00-2.00-----------
.......................................................................................................................ATACTCTTTTTTTTTTTTCG...............................................................................................................2015.000.001.004.006.003.00-1.00-----------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTGTG............................................................................................................239.000.004.004.001.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTGTG................................................................................................................198.000.002.004.002.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTATG...............................................................................................................208.000.004.003.00-1.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTGTG.............................................................................................................228.000.006.002.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTGGG............................................................................................................238.000.003.004.00--1.00------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTGGG.............................................................................................................227.000.004.003.00---------------
.....................................................................................................................TTATACTCTTTTTTTTTTAG.................................................................................................................205.000.001.00-4.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTTCCTG.............................................................................................................225.000.00-1.001.003.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTGGG...............................................................................................................205.000.001.004.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTCG.................................................................................................................185.000.002.002.001.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTTGTG..............................................................................................................214.000.00-2.001.001.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTCGG.............................................................................................................224.000.003.00-1.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTTCTCG.............................................................................................................224.000.001.00-2.001.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTCTA.............................................................................................................224.000.002.00-2.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTGT..............................................................................................................214.000.001.002.00-1.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCTAG...........................................................................................................244.000.00--1.003.00-------------
...AGAAGACTTTGGGACATT.....................................................................................................................................................................................................................................1814.004.00--------4.00--------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCCG............................................................................................................233.000.00-2.001.00--------------
.......................................................................................................................ATACTCTTTTTTTTTGTTG................................................................................................................193.000.002.00--1.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTGTG...............................................................................................................203.000.002.001.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTATTG...........................................................................................................243.000.001.002.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCAG............................................................................................................233.000.001.001.00--1.00------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTCTAG............................................................................................................232.000.00-1.00-1.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTGGGG............................................................................................................232.000.001.00---1.00------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTCTCG............................................................................................................232.000.00-1.001.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCTGG...........................................................................................................242.000.00--1.001.00-------------
..................................................GTAGAGTGCCACTGAAAAATGTT.................................................................................................................................................................................2312.002.00----------2.00------
.......................................................................................................................ATACTCTTTTTTTTTTCCG................................................................................................................192.000.001.001.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTATTT...........................................................................................................242.000.00-1.001.00--------------
..GAGAAGACTTTGGGACAT......................................................................................................................................................................................................................................1812.002.00-------2.00---------
......................................................................................................................TATACTCTTTTTTTTTTTTAAG..............................................................................................................222.000.00--2.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTCCTG............................................................................................................232.000.00--2.00--------------
....................................................................................................................TTTATACTCTTTTTTTTTAAG.................................................................................................................212.000.001.001.00---------------
.........................................................................................................................ACTCTTTTTTTTTTTTTTATAG...........................................................................................................222.000.001.001.00---------------
......................................................................................................................TATACTCTTTTTTTTTTTTTTGG.............................................................................................................232.000.001.001.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCTA............................................................................................................232.000.00---2.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTGTTG...........................................................................................................242.000.002.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTGTGG.............................................................................................................222.000.00-2.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTCGAG............................................................................................................232.000.00----1.00-1.00----------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCCTG...........................................................................................................242.000.00---1.00-1.00-----------
.......................................................................................................................ATACTCTTTTTTTTTTTAC................................................................................................................192.000.00-1.00--1.00------------
.....................................................................................................................TTATACTCTTTTTTTTTTTTTTTAAG...........................................................................................................262.000.00-1.00-1.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTATT............................................................................................................232.000.002.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTGGTG.............................................................................................................222.000.00-1.00----1.00----------
.......................................................................................................................ATACTCTTTTTTTTTTTTTGTGG............................................................................................................232.000.00-1.00-1.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTGGGG...........................................................................................................242.000.002.00----------------
.....................................................................................................................TTATACTCTTTTTTTTTTTTTTG..............................................................................................................2351.601.600.800.40-0.40-------------
.....................................................................................................................TTATACTCTTTTTTTTTCTTG................................................................................................................211.000.00--1.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTACTG..............................................................................................................211.000.00--1.00--------------
......................................................................................................................TATACTCTTTTTTTTTTTTCG...............................................................................................................211.000.00-1.00---------------
....GAAGACTTTGGGACATTT....................................................................................................................................................................................................................................1811.001.00-------1.00---------
.......................................................................................................................ATACTCTTTTTTTTTTTTCACT.............................................................................................................221.000.00---1.00-------------
......................................................................................................................TATACTCTTTTTTTTTTTTGAA..............................................................................................................221.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTGGG.................................................................................................................181.000.00-1.00---------------
...AGAAGACTTTGGGACATTTCA..................................................................................................................................................................................................................................2111.001.00---------------1.00-
.......................................................................................................................ATACTCTTTTTTTTTTTACAG..............................................................................................................211.000.00-1.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTGGGG.............................................................................................................221.000.00-1.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTCGGG.............................................................................................................221.000.001.00----------------
.............................................................................................................................TTTTTTTTTTTTTTGAAAAGAGGGG....................................................................................................251.000.00----1.00------------
......................................................................................................................TATACTCTTTTTTTTTTTTTAAAG............................................................................................................241.000.001.00----------------
.....................................................................................................................TTATACTCTTTTTTTTTTTCG................................................................................................................211.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTGAAAG..........................................................................................................251.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCTTA...........................................................................................................241.000.00--1.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTCCG.............................................................................................................221.000.00--1.00--------------
.....................................................................................................................TTATACTCTTTTTTTTTTTTTTTTAG...........................................................................................................261.000.00---1.00-------------
.....................................................................................................................TTATACTCTTTTTTTTTTTTCTTG.............................................................................................................241.000.00--1.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTGCT.............................................................................................................221.000.00-1.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTGTGG..............................................................................................................211.000.00-1.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTGTTT...........................................................................................................241.000.00-1.00---------------
.....................................................................................................................................................................TTTCTGTAATCTGTTCTGGGAC...............................................................2211.001.00-------1.00---------
....................................................................................................................TTTATACTCTTTTTTTTTTTTTTTAAT...........................................................................................................271.000.00-----1.00-----------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCCTA...........................................................................................................241.000.00----1.00------------
......................................................................................................................TATACTCTTTTTTTTTTTTTTCA.............................................................................................................231.000.001.00----------------
....................................................................................................................TTTATACTCTTTTTTTTTATTG................................................................................................................221.000.00-----1.00-----------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTACAT...........................................................................................................241.000.00----1.00------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTGCTT...........................................................................................................241.000.00------1.00----------
.......................................................................................................................ATACTCTTTTTTTTTTTTCCCG.............................................................................................................221.000.00--1.00--------------
..............................................................................................................................TTTTTTTTTTTTTGAAAAGAAGGG....................................................................................................241.000.00------1.00----------
.......................................................................................................................ATACTCTTTTTTTTTTTATCA..............................................................................................................211.000.00-1.00---------------
........................................................................................................................TACTCTTTTTTTTTTTTTTGCG............................................................................................................221.000.00--1.00--------------
........................................................................................................................TACTCTTTTTTTTTTTTTTCCAC...........................................................................................................231.000.00----1.00------------
.......................................................................................................................ATACTCTTTTTTTTTTTGGGG..............................................................................................................211.000.00-1.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTACA...............................................................................................................201.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTGAAG...........................................................................................................241.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTGCAC................................................................................................................191.000.00-----1.00-----------
......................................................................................................................TATACTCTTTTTTTTTTTCG................................................................................................................201.000.00---1.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTGACAG..........................................................................................................251.000.00----1.00------------
....................................................................................................................TTTATACTCTTTTTTTCTTG..................................................................................................................201.000.00--1.00--------------
...................................................................................................................................................................CATTTCTGTAATCTGTTCTGGGA................................................................2311.001.00-----------1.00-----
.......................................................................................................................ATACTCTTTTTTTTTTTTTTGACCC..........................................................................................................251.000.00------1.00----------
.......................................................................................................................ATACTCTTTTTTTTTTTTTGGAG............................................................................................................231.000.00-1.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCCT............................................................................................................231.000.001.00----------------
...............................TTCAAGCAACATTTCTAAGGTAGAGT.................................................................................................................................................................................................2611.001.00---------1.00-------
..........TTTGGGACATTTCATGAGTCATTCAAGC....................................................................................................................................................................................................................2811.001.00------------1.00----
.......................................................................................................................ATACTCTTTTTTTTTTTTTCTAT............................................................................................................231.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTCGGG............................................................................................................231.000.001.00----------------
.....................................................................................................................TTATACTCTTTTTTTTCTTG.................................................................................................................201.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTCGTC............................................................................................................231.000.00-----1.00-----------
.TGAGAAGACTTTGGGACATTTCATGAG..............................................................................................................................................................................................................................2711.001.00---------1.00-------
.......................................................................................................................ATACTCTTTTTTTTTTTTCA...............................................................................................................201.000.00-1.00---------------
.....................................................................................................................TTATACTCTTTTTTTTTTTTTTAACT...........................................................................................................261.000.00---1.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTGCG............................................................................................................231.000.00-----1.00-----------
.......................................................................................................................ATACTCTTTTTTTTTTCTAG...............................................................................................................201.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTCGAG.............................................................................................................221.000.00----1.00------------
.......................................................................................................................ATACTCTTTTTTTTTTTATTC..............................................................................................................211.000.00--1.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTTCCG..............................................................................................................211.000.00--1.00--------------
........................................................................................................................TACTCTTTTTTTTTTTTTTAACG...........................................................................................................231.000.00---1.00-------------
...AGAAGACTTTGGGACATTTCATGAG..............................................................................................................................................................................................................................2511.001.00-------1.00---------
.........................................................................................................................ACTCTTTTTTTTTTTTTTGAATG..........................................................................................................231.000.00----1.00------------
.......................................................................................................................ATACTCTTTTTTTTTTTGTCG..............................................................................................................211.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCAAG...........................................................................................................241.000.00--1.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCATC...........................................................................................................241.000.001.00----------------
.....................................................................................................................TTATACTCTTTTTTTTTTTTAACT.............................................................................................................241.000.00---1.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTGGGA............................................................................................................231.000.00-----1.00-----------
.......................................................................................................................ATACTCTTTTTTTTTTTTCAG..............................................................................................................211.000.00-1.00---------------
.TGAGAAGACTTTGGGACATTTCATGAGT.............................................................................................................................................................................................................................2811.001.00---------1.00-------
......................................................................................................................TATACTCTTTTTTTTTTTTTTGGCC...........................................................................................................251.000.00----1.00------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCTC............................................................................................................231.000.001.00----------------
...AGAAGACTTTGGGACATTT....................................................................................................................................................................................................................................1911.001.00----------------1.00
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCTAT...........................................................................................................241.000.00---1.00-------------
.........................................................................................................................ACTCTTTTTTTTTTTTTTATGG...........................................................................................................221.000.00--1.00--------------
...........................................................................................................................TCTTTTTTTTTTTTTTGAAAAGTTGG.....................................................................................................261.000.00-----1.00-----------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCCCC...........................................................................................................241.000.00---1.00-------------
.....................................................................................................................TTATACTCTTTTTTTTTTTTATTT.............................................................................................................241.000.00--1.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTTTCGG..............................................................................................................211.000.001.00----------------
.....................................................................................................................TTATACTCTTTTTTTTTCG..................................................................................................................191.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTGGGC.............................................................................................................221.000.00-1.00---------------
......................................................................................................................TATACTCTTTTTTTTCTTG.................................................................................................................191.000.00-1.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTGCGG.............................................................................................................221.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTCTGG.............................................................................................................221.000.00---1.00-------------
.......................................................................................................................ATACTCTTTTTTTTTTTGGTG..............................................................................................................211.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTCTCG...............................................................................................................201.000.00-1.00---------------
..................................................................................................................TGTTTATACTCTTTTTTTTTTTTTCTTG............................................................................................................281.000.00---1.00-------------
.....................................................................................................................TTATACTCTTTTTTTTTTTTTTAT.............................................................................................................241.000.00-1.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTCAAC.............................................................................................................221.000.00--1.00--------------
.......................................................................................................................ATACTCTTTTTTTTTTCGAG...............................................................................................................201.000.00----1.00------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTAGC............................................................................................................231.000.00------1.00----------
.....................................................................................................................TTATACTCTTTTTTTTTTTTTTTTCG...........................................................................................................261.000.001.00----------------
............................................................................................................................CTTTTTTTTTTTTTTGAAAACG........................................................................................................221.000.00----1.00------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTGTC.............................................................................................................221.000.00-1.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTATTG..............................................................................................................211.000.001.00----------------
..........................................................................................................................CTCTTTTTTTTTTTTTTGAAAAG.........................................................................................................2311.001.00-1.00---------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTGTTT............................................................................................................231.000.001.00----------------
.......................................................................................................................ATACTCTTTTTTTTTTTTTTCGG............................................................................................................231.000.00-1.00---------------
.....................................................................................................................TTATACTCTTTTTTTTTTTTTTGG.............................................................................................................2450.201.600.20----------------

Antisense strand
ATGAGAAGACTTTGGGACATTTCATGAGTCATTCAAGCAACATTTCTAAGGTAGAGTGCCACTGAAAAATGTTATTTATTACCTTGAGTCTTTTCTGTTCTTATGCCTTACATGTGTTTATACTCTTTTTTTTTTTTTTGAAAAGACGTTAGAGTTCTTGATACATTTCTGTAATCTGTTCTGGGACCATAAGAGGTATGTGGCAGTTACATTTTTCTGGTAAGGCAATTTTGAGTGTGTGTTGGGGGAA
....................................................((((((....((((..((((.............(((....)))..............))))...))))))))))..(((((((....)))))))........................................................................................................
..................................................51..............................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR189785SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
..................................................................................................................................................................................................................................AATTTTGAGTGTGTGTTCCG.... 201.000.00-------------1.00---
...............................................................................................................................TTTTTTTTTTTTGAAAAGATG...................................................................................................... 211.000.00--------------1.00--