ID: uc001jat.2_intron_2_0_chr10_43892039_r.3p
GENE: HNRNPF(1)
chr10:43891989-43892238-


(3)
AGO2.ip 		(6)
B-CELL 		(17)
BREAST 		(39)
CELL-LINE 		(3)
CERVIX 		(2)
HEART 		(5)
HELA 		(8)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(22)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCCGCGCAGGCCCTGGGGCCGACCTTCCTGCCGGGCCGGGCGGTCCGAGGCTGCTGGAGTGCCGTGAGCAGGCCGCGGGAACGTCGCCGTCACCTTGTCTCGGGGCCTCGGCGCTGCTTCCCGCCAAAACACGTTTACCGCGCGCCCGGGCCTCCCACCTTGCGGAAGGGACCCCACCACCACTTGGATTTCTGTTGCAGGTTGAGAACAAAAACATGCACCTGGAGTTTCCCCGGAGCCCTCTGCGTGG
..................................................(((((((....))...)))))...(((((((((.(((((...(((((...)))))...))))).)).)))))))..............................................................................................................................
..................................................51...........................................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037936(GSM510474)
293cand1. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR343335SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191542(GSM715652)
64genomic small RNA (size selected RNA from t. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR191519(GSM715629)
86genomic small RNA (size selected RNA from t. (breast)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
.........................................................................................................CCTCGGCGCTGCTTCCCGC..............................................................................................................................1917.007.00-----1.00--1.00------2.00------------------1.00------------------------------------------------------1.00-1.00-------------------
.........................................................................................................CCTCGGCGCTGCTTCCCGCC.............................................................................................................................2016.006.00--------1.001.00---2.00--1.00---------------------------------------------------------------------------1.00------------------
.........................................................................................................CCTCGGCGCTGCTTCCCGCCAAA..........................................................................................................................2314.004.00-------------------------------1.00-----------------1.00---1.00---------------1.00-----------------------------------------
..........................................................GTGCCGTGAGCAGGCCGCGG............................................................................................................................................................................2013.003.00----------3.00----------------------------------------------------------------------------------------------------
...............................................AGGCTGCTGGAGTGCCGTGAGCAGG..................................................................................................................................................................................2513.003.00--3.00------------------------------------------------------------------------------------------------------------
.........................................................................................................CCTCGGCGCTGCTTCCCGCCAT...........................................................................................................................2213.001.00----------------------------------------------1.00--------------------------------------1.00-----------1.00-------------
.....................................................................................................................................................................................ACTTGGATTTCTGTTGCAGGTTGAGAA..........................................2713.003.00---------------------------------2.00------------------------------------------------------1.00----------------------
.........................................................................................................CCTCGGCGCTGCTTCCCGCCAAT..........................................................................................................................233.000.00------------------------------------------------------------------------------------------1.00---1.00---1.00------------
.....................................................................AGGCCGCGGGAACGTCGCC..................................................................................................................................................................1913.003.00----------------1.00---1.00------------------1.00-----------------------------------------------------------------------
..................................................................................................................................................................CGGAAGGGACCCCACCACCACCTGG...............................................................2512.002.002.00--------------------------------------------------------------------------------------------------------------
.........................................................................................TCACCTTGTCTCGGGGCCTCGGCT.........................................................................................................................................242.000.00---------2.00-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ACCTGGAGTTTCCCCGGAG............1912.002.00--------------1.00-----------------------------------------------------------1.00------------------------------------
...................................................................GCAGGCCGCGGGAACGTCGCC..................................................................................................................................................................2112.002.00-------------------------------------------------------1.00----------------------------------------1.00--------------
........................TTCCTGCCGGGCCGGGCGGTCT............................................................................................................................................................................................................2212.001.00---------------------1.00------------------------------------------------------------------------------1.00----------
........................................................................................................................................................................................TGGATTTCTGTTGCAGGTTGAGAACA........................................2612.002.00-------2.00-------------------------------------------------------------------------------------------------------
........................TTCCTGCCGGGCCGGGCGGTCAT...........................................................................................................................................................................................................2312.001.00-------------------------2.00-------------------------------------------------------------------------------------
..................................................................................................................................................................CGGAAGGGACCCCACCACCAC...................................................................2112.002.001.00--------------------------------------------------------------------------------------------------1.00-----------
.................................................................................................................................................................................CACCACTTGGATTTCTGTTGCAG..................................................2312.002.00---------------------------2.00-----------------------------------------------------------------------------------
...............................................................................................................................................................................................................ACAAAAACATGCACCTGG.........................1812.002.00-2.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................CACCACCACTTGGATTTCTGTTGCAG..................................................2612.002.00------2.00--------------------------------------------------------------------------------------------------------
................................................................TGAGCAGGCCGCGGGAACGT......................................................................................................................................................................2012.002.00-----------------------------------1.00---------------1.00-----------------------------------------------------------
...........................................TCCGAGGCTGCTGGAGTG.............................................................................................................................................................................................1812.002.00-----1.00----------------------------------------------------------1.00----------------------------------------------
..................................................................AGCAGGCCGCGGGAACGT......................................................................................................................................................................1812.002.00------------2.00--------------------------------------------------------------------------------------------------
...........................CTGCCGGGCCGGGCGGTCCGAGG........................................................................................................................................................................................................2312.002.00-----------1.00------------------1.00--------------------------------------------------------------------------------
....................................................................................................................................................................................CACTTGGATTTCTGTTGCAGA.................................................212.000.00---2.00-----------------------------------------------------------------------------------------------------------
..........................................GTCCGAGGCTGCTGGAGTGC............................................................................................................................................................................................2012.002.00-1.00------------------------------------------------------------------1.00------------------------------------------
...................................................................GCAGGCCGCGGGAACGTCGCCGTCAC.............................................................................................................................................................2612.002.00--2.00------------------------------------------------------------------------------------------------------------
..........................................GTCCGAGGCTGCTGGAG...............................................................................................................................................................................................1712.002.00---1.00-------------------------1.00---------------------------------------------------------------------------------
................................................................................................................................................................TGCGGAAGGGACCCCACCACCACTTGGAC.............................................................292.000.002.00--------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................GTTGAGAACAAAAACATGCACCTGGAGT......................2812.002.00-------2.00-------------------------------------------------------------------------------------------------------
..................................................................AGCAGGCCGCGGGAATGGG.....................................................................................................................................................................191.000.001.00--------------------------------------------------------------------------------------------------------------
............................................................................................................................................................ACCTTGCGGAAGGGACCCCACCACCA....................................................................2611.001.00-----------------------------------------------1.00---------------------------------------------------------------
.........................................................................................................CCTCGGCGCTGCTTCCCGA..............................................................................................................................191.000.00-----------------------------------------------------------1.00---------------------------------------------------
.....................................................................AGGCCGCGGGAACGTCGC...................................................................................................................................................................1811.001.00-----1.00---------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................GTTGAGAACAAAAACATG................................1811.001.00---------------------------------------------------------------------------------1.00-----------------------------
...................................................................................................................................................................GGAAGGGACCCCACCACCA....................................................................1911.001.00-----------------1.00---------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TTGAGAACAAAAACATGCACCCGG.........................241.000.00-------------------1.00-------------------------------------------------------------------------------------------
.................................................................GAGCAGGCCGCGGGAACG.......................................................................................................................................................................1811.001.00-------------------------------------------------------------------------------1.00-------------------------------
..................................................CTGCTGGAGTGCCGTGAGCAGGCCGC..............................................................................................................................................................................2611.001.00-----------1.00---------------------------------------------------------------------------------------------------
.......................................................................................................................................................................GGGACCCCACCACCAACCA................................................................191.000.00---------------------------------------------------------1.00-----------------------------------------------------
.........................................................................................................CCTCGGCGCTGCTTCCCGCAT............................................................................................................................2111.007.00-----------------------1.00---------------------------------------------------------------------------------------
........................TTCCTGCCGGGCCGGGCGATA.............................................................................................................................................................................................................211.000.00------------------1.00--------------------------------------------------------------------------------------------
.................................................GCTGCTGGAGTGCCGTGAGC.....................................................................................................................................................................................2011.001.00------------------------------1.00--------------------------------------------------------------------------------
........................................................................................................................................................................................................GTTGAGAACAAAAACATGCA..............................2011.001.00-------------------------------1.00-------------------------------------------------------------------------------
.........................TCCTGCCGGGCCGGGCGGTCTTT..........................................................................................................................................................................................................231.000.00--------------------------------------------------------------------------------------1.00------------------------
..................................................................................................................................................................CGGAAGGGACCCCACCACCACCCGG...............................................................2511.002.00------------------------1.00--------------------------------------------------------------------------------------
........................................................................................................................................................................................................GTTGAGAACAAAAACATGC...............................1911.001.00-1.00-------------------------------------------------------------------------------------------------------------
...........................................TCCGAGGCTGCTGGAGTGC............................................................................................................................................................................................1911.001.00---------------------------------------------------------------------------------------1.00-----------------------
...............................................................................................TGTCTCGGGGCCTCGGC..........................................................................................................................................1711.001.00----1.00----------------------------------------------------------------------------------------------------------
................................................................TGAGCAGGCCGCGGGAACGTCGCCGC................................................................................................................................................................261.000.001.00--------------------------------------------------------------------------------------------------------------
...............................................AGGCTGCTGGAGTGCCGTGAG......................................................................................................................................................................................2111.001.00----------------------------1.00----------------------------------------------------------------------------------
................................................................................................................................................................................CCACCACTTGGATTTCTGTTGCAGG.................................................2511.001.00------1.00--------------------------------------------------------------------------------------------------------
.........................................................................................................CCTCGGCGCTGCTTCCCGCCA............................................................................................................................2111.001.00--------------------------------------------------------------1.00------------------------------------------------
................................................................................................................................................................................CCACCACTTGGATTTCTGTTGCAG..................................................2411.001.00-----------1.00---------------------------------------------------------------------------------------------------
...............................................................GTGAGCAGGCCGCGGGAACGTC.....................................................................................................................................................................2211.001.00--------------1.00------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................GTTGCAGGTTGAGAACAAAAACATGCA..............................2711.001.00---------------------------------------------1.00-----------------------------------------------------------------
.........................TCCTGCCGGGCCGGGCGGTCCGAGGCTGC....................................................................................................................................................................................................2911.001.00--------------------------------1.00------------------------------------------------------------------------------
...........................................................................................ACCTTGTCTCGGGGCCTC.............................................................................................................................................1811.001.00------------------------------------------------------------------------1.00--------------------------------------
........................TTCCTGCCGGGCCGGGCGAAT.............................................................................................................................................................................................................211.000.00------------------------------------------------------1.00--------------------------------------------------------
.................GCCGACCTTCCTGCCGGGC......................................................................................................................................................................................................................1911.001.00----------------------------------------------------1.00----------------------------------------------------------
.....................................GGGCGGTCCGAGGCTGCT...................................................................................................................................................................................................1811.001.00-----------------------------------1.00---------------------------------------------------------------------------
........................................................................................................................................................................................................................TGCACCTGGAGTTTCCCCGGAGC...........2311.001.00------------------------------------------------------------------------------------1.00--------------------------
.........................................................................................................................................................................................................TTGAGAACAAAAACATGCACCTAG.........................241.000.00------------------------------------------------------------1.00--------------------------------------------------
..................................................................................................................................................................................................................................GTTTCCCCGGAGCCCT........1611.001.00------------------------------------1.00--------------------------------------------------------------------------
...............GGGCCGACCTTCCTGCCGGGCCGGG..................................................................................................................................................................................................................2511.001.00-----------------------------------------------------------------------------------1.00---------------------------
.............................................................................................................................................................................................................................CTGGAGTTTCCCCGGAGCCCTCTGCGTG.2811.001.00----1.00----------------------------------------------------------------------------------------------------------
...................................................................GCAGGCCGCGGGAACGTCG....................................................................................................................................................................1911.001.00-1.00-------------------------------------------------------------------------------------------------------------
................................................................................................................................................................TGCGGAAGGGACCCCACCACCACCCGG...............................................................271.000.00------------------------1.00--------------------------------------------------------------------------------------
............................TGCCGGGCCGGGCGGTCCGAGGCTGCTGG.................................................................................................................................................................................................2911.001.00-----------------------------------------------------------------------1.00---------------------------------------
.....................................................................AGGCCGCGGGAACGTCGAC..................................................................................................................................................................191.000.00-------------------------------------------------------------1.00-------------------------------------------------
................................................................................................................................................................TGCGGAAGGGACCCCACCACCACCTGG...............................................................271.000.001.00--------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................ACCCCACCACCACTTGGATTTCTGTTGCAG..................................................3011.001.00----------------------------------------------------------1.00----------------------------------------------------
...............................................................................................................................................................TTGCGGAAGGGACCCCACCACCACTTGGAAT............................................................311.000.001.00--------------------------------------------------------------------------------------------------------------
..................................GCCGGGCGGTCCGAGGCTGCTGGAGTGC............................................................................................................................................................................................2811.001.00---1.00-----------------------------------------------------------------------------------------------------------
.............................GCCGGGCCGGGCGGTCCGAGGCTGCTG..................................................................................................................................................................................................2711.001.00-1.00-------------------------------------------------------------------------------------------------------------
...........................CTGCCGGGCCGGGCGGTCCGAG.........................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------------------------1.00---------------
........................................CGGTCCGAGGCTGCTGGAGTGCCGCG........................................................................................................................................................................................261.000.00-------------------1.00-------------------------------------------------------------------------------------------
...................................................................GCAGGCCGCGGGAACGTCGC...................................................................................................................................................................2011.001.00------------------------------------------------------------------------------1.00--------------------------------
.....................................................................AGGCCGCGGGAACGTCGCCG.................................................................................................................................................................2011.001.00------------------------------------------1.00--------------------------------------------------------------------
...........................................................................................................................................................................................................GAGAACAAAAACATGCACCTG..........................2111.001.00-----------------------------------------------------------------1.00---------------------------------------------
.....................................................................................................................................................................................................................................TCCCCGGAGCCCTCTC.....161.000.00----1.00----------------------------------------------------------------------------------------------------------
.................................................GCTGCTGGAGTGCCGTGCG......................................................................................................................................................................................191.000.00-------------------------------------------------------------------1.00-------------------------------------------
..............................................................................................................................................................................................................AACAAAAACATGCACCTGGAG.......................2111.001.00------1.00--------------------------------------------------------------------------------------------------------
..................................GCCGGGCGGTCCGAGGCTGCT...................................................................................................................................................................................................2111.001.00-----------------------------1.00---------------------------------------------------------------------------------
......................................................................................................................................................................................................................CATGCACCTGGAGTTTCCCCGGAGC...........2511.001.00-------------------------------------------1.00-------------------------------------------------------------------
..........................................................................................................................................................................................................TGAGAACAAAAACATGCACCTGGAGTTTCCCCG...............3311.001.00--------------------------------------------------1.00------------------------------------------------------------
...............................................................................................................................................................................ACCACCACTTGGATTTCTGTT......................................................2111.001.00------------------------------------1.00--------------------------------------------------------------------------
.............................GCCGGGCCGGGCGGTCCGAGGCTGCTGGA................................................................................................................................................................................................2911.001.00----------------------------------1.00----------------------------------------------------------------------------
.....................................................................................................................................................................AAGGGACCCCACCACCACC..................................................................191.000.00------------------------------------------------------------------1.00--------------------------------------------
...........................................................................................................................................................................................................GAGAACAAAAACATGCACCTGGAGTTTCC..................2911.001.00-----------------------------------------1.00---------------------------------------------------------------------
.................................................................GAGCAGGCCGCGGGAACAG......................................................................................................................................................................191.000.00----------------------------------------------------------------------1.00----------------------------------------
.................................................GCTGCTGGAGTGCCGTGAG......................................................................................................................................................................................1911.001.00--------------------------------------------------------1.00------------------------------------------------------
........................TTCCTGCCGGGCCGGGCGGA..............................................................................................................................................................................................................201.000.00-----------------------1.00---------------------------------------------------------------------------------------
........................TTCCTGCCGGGCCGGGCGGTC.............................................................................................................................................................................................................2111.001.00--------------------1.00------------------------------------------------------------------------------------------
....................................................................................................CGGGGCCTCGGCGCTAAA....................................................................................................................................181.000.00-----------------1.00---------------------------------------------------------------------------------------------
..........................................................................GCGGGAACGTCGCCGTCACC............................................................................................................................................................2011.001.00--------------------------------------------------------------------------------1.00------------------------------
.........................................................................................................................................................................................................TTGAGAACAAAAACATGCA..............................1911.001.00-------------------------------------------------------------------------1.00-------------------------------------
........................................................................................................................................................................................TGGATTTCTGTTGCAGGTTGAGA...........................................2311.001.00------------1.00--------------------------------------------------------------------------------------------------
......................................................................................................................TCCCGCCAAAACACGTTTA.................................................................................................................1911.001.00--------------------------------------------1.00------------------------------------------------------------------
....................................................................................................CGGGGCCTCGGCGCTCTA....................................................................................................................................181.000.00--------------------------------1.00------------------------------------------------------------------------------
.......................................................................................................................................................................................................GGTTGAGAACAAAAACATGC...............................2011.001.00---------------------------------------------------------------------------------------------1.00-----------------
..........................................................................................................CTCGGCGCTGCTTCCCGCCAAA..........................................................................................................................2211.001.00---------------------1.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................ACATGCACCTGGAGTTTCCCCGGAGCCCTCTG.....3211.001.001.00--------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CACCACTTGGATTTCTGTTGCA...................................................2211.001.00--------------------------------------1.00------------------------------------------------------------------------
..........................................................................................................CTCGGCGCTGCTTCCCGC..............................................................................................................................1811.001.00--------1.00------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CCACTTGGATTTCTGTTGCAGGT................................................2311.001.00------------------------------------------------1.00--------------------------------------------------------------
.............................................................................................CTTGTCTCGGGGCCTCGG...........................................................................................................................................1811.001.00----1.00----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ACCTGGAGTTTCCCCGGAGCCCTCTG.....2611.001.001.00--------------------------------------------------------------------------------------------------------------
.CCGCGCAGGCCCTGGGGC.......................................................................................................................................................................................................................................1811.001.00---------------------------------------------------------------1.00-----------------------------------------------
...................................................................................................................................................................GGAAGGGACCCCACCACC.....................................................................1811.001.00-----------------------------------------------------------------------------1.00---------------------------------
.....................................................................AGGCCGCGGGAACGTCGCCGTCACCT...........................................................................................................................................................2611.001.00----------------------------------------------------------------------------1.00----------------------------------
..............................................................................................................................................................................CACCACCACTTGGATTTCTGTTGCAGA.................................................2711.002.00---------------------------------------------------------------------------1.00-----------------------------------
........................................................................CCGCGGGAACGTCGCCGGC...............................................................................................................................................................191.000.00-------------1.00-------------------------------------------------------------------------------------------------
........................................................................................................................................................................................TGGATTTCTGTTGCAG..................................................1630.670.67--------------------------------------0.33----------------------------------------------------------------------0.33-
....................................................................................................................................................................................................GCAGGTTGAGAACAAAAA....................................1820.500.50-------------------------------------0.50-------------------------------------------------------------------------
.........................................GGTCCGAGGCTGCTGG.................................................................................................................................................................................................1620.500.50-------------------------------------------------------------------------------------------------------0.50-------
....................GACCTTCCTGCCGGGCCG....................................................................................................................................................................................................................1820.500.50----------------------------------------------------------------------------------------------------------0.50----
...............................................................................................TGTCTCGGGGCCTCGG...........................................................................................................................................1620.500.50---0.50-----------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................TTCCCCGGAGCCCTCTGCGTG.2120.500.50-----------------------------------------------------------------------------------------------------------0.50---
......................................................................................................................................................................AGGGACCCCACCACCAC...................................................................1740.500.500.50--------------------------------------------------------------------------------------------------------------
...............................................AGGCTGCTGGAGTGCCGTG........................................................................................................................................................................................1950.400.40-------------------------------------0.20------------------------------------------------------------------------0.20
...................................................................................................................................................................................................TGCAGGTTGAGAACAAAA.....................................1830.330.33-0.33-------------------------------------------------------------------------------------------------------------
...........................................TCCGAGGCTGCTGGAG...............................................................................................................................................................................................1630.330.33-----------------------------------------------------------------------------------------------------0.33---------
..........................................................................................................................................................................................................................................GGAGCCCTCTGCGTGG1630.330.33-----------------------------------------------------------------------------------------------------0.33---------
................................................................................................GTCTCGGGGCCTCGG...........................................................................................................................................1540.250.25----0.25----------------------------------------------------------------------------------------------------------
.....................................................................................................GGGGCCTCGGCGCTG......................................................................................................................................1590.110.11-----------------------------------------------------------------------------------------------------0.11---------

Antisense strand
CCCGCGCAGGCCCTGGGGCCGACCTTCCTGCCGGGCCGGGCGGTCCGAGGCTGCTGGAGTGCCGTGAGCAGGCCGCGGGAACGTCGCCGTCACCTTGTCTCGGGGCCTCGGCGCTGCTTCCCGCCAAAACACGTTTACCGCGCGCCCGGGCCTCCCACCTTGCGGAAGGGACCCCACCACCACTTGGATTTCTGTTGCAGGTTGAGAACAAAAACATGCACCTGGAGTTTCCCCGGAGCCCTCTGCGTGG
..................................................(((((((....))...)))))...(((((((((.(((((...(((((...)))))...))))).)).)))))))..............................................................................................................................
..................................................51...........................................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037936(GSM510474)
293cand1. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR343335SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR343334SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191542(GSM715652)
64genomic small RNA (size selected RNA from t. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR191519(GSM715629)
86genomic small RNA (size selected RNA from t. (breast)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191457(GSM715567)
27genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
.........................................................................................................................................................................................................................................CGGAGCCCTCTGCGTCTG 183.000.00--------------------------2.00-------------1.00----------------------------------------------------------------------
............GCAGGAAGGTCGGCCCCAG........................................................................................................................................................................................................................... 1911.001.00-------------------------------------1.00-------------------------------------------------------------------------
.......................................GCGGTCCGAGGCTGCTGGAGTGT............................................................................................................................................................................................ 231.000.00----------------------------1.00----------------------------------------------------------------------------------
..............................................................................................................................................................................................TGTTTTTGTTCTCAACCTGCAACAGA.................................. 2611.001.00----------------------------------------------------------------------------------1.00----------------------------
..............................................................................................................................................................................................TTTGTTCTCAACCTGCAACAGA...................................... 2211.001.00-----1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CGCAAGGTGGGAGGC...................................................................................... 1521.001.00------------------------------------------------------------------------------------------------------0.50-----0.50--
...........................................................................................................................................................................................................................ACCTGGAGTTTCCCCGCG............. 181.000.00----------------------1.00----------------------------------------------------------------------------------------
.........................................................................................................................................CCGCGCGCCCGGGCCTCAG.............................................................................................. 191.000.00------------------1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ACCTGGAGTTTCCCCGCCA............ 191.000.00----------------------1.00----------------------------------------------------------------------------------------
.....................................CAGCCTCGGACCGCCC..................................................................................................................................................................................................... 1620.500.50---------------------------------------------------------------------------------------------------------0.50-----
.......................................................................................................................................................................................................................................CCACGCAGAGGGCTCCGGG 1920.500.50--------------------------------------------------------------------------------------------------------0.50------
....................................GCCTCGGACCGCCCG....................................................................................................................................................................................................... 1520.500.50--------0.50------------------------------------------------------------------------------------------------------
...............................................................................................................................................GTGGGAGGCCCGGGC............................................................................................ 1590.110.11--------------0.11------------------------------------------------------------------------------------------------