ID: uc001jao.1_intron_8_0_chr10_43696337_r.3p
GENE: RASGEF1A(4)
chr10:43696287-43696536-


(5)
CELL-LINE
(4)
CERVIX
(3)
LIVER
(1)
OTHER
(18)
SKIN

Sense strand
AGACCCCTCCTCAGCAGTCCTCAGAGGAGCCCATGCTGTGCCCCACTTTGTCCTTGAAGGCCTGAAGGCTGCGGTTTAGATAGGGGCTGTGGGCTCACGTTGGTTAGGCACATCCCTGGAGGTGAGATGGATCCTACCCACAGTGGTGGTGGCCTTGCTGCCAGCCCATGCTGGCACCCTTATTGCCCTTGACCCCACAGGAGAATGGCACAGTGAAGAAGGCCATTGCCCAGATGACACAGAGCCTGTT
...................................................((.....((((....))))..)).........((((((..(((...........((((.((((.(((..((((.((....)).))))..))).))))...)))).)))..))))))...................................................................................
..................................................51....................................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR040030(GSM532915)
G013N. (cervix)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040011(GSM532896)
G529T. (cervix)
SRR343336DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR343335SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................................GTGGCCTTGCTGCCACG.....................................................................................172282.000.001802.00376.0025.0021.0017.0013.004.004.00-3.003.003.002.00-2.00----1.00-1.001.001.00--1.001.00--1.00-----
....................................................................................................................................................GTGGCCTTGCTGCCACGA....................................................................................1812.000.0011.001.00----------------------------------
........................................................AAGGCCTGAAGGCTGCCGGC..............................................................................................................................................................................203.000.00---------------2.00---------1.00----------
..............................................................................................................................................................................................................GGCACAGTGAAGAAGGC...........................1722.002.00----------------1.50----------------0.50--
....................................................................................................................................................GTGGCCTTGCTGCCAAG.....................................................................................171.000.001.00-----------------------------------
....................................................................................................................................................................................TATTGCCCTTGACCCCACCTGT................................................221.000.00-------------1.00----------------------
....................................................................................................................................................................................TATTGCCCTTGACCCGTCG...................................................191.000.00------------------1.00-----------------
....................................................................................................................................................................................TATTGCCCTTGACCCAACA...................................................191.000.00-------------1.00----------------------
..........................................................................................GGGCTCACGTTGGTTGGAT.............................................................................................................................................191.000.00--------1.00---------------------------
......................................................................................................................................................................................................................................CAGATGACACAGAGCCTTCC201.000.00-----------------1.00------------------
.......................................................................................................................................................................................................................................AGATGACACAGAGCCTGGCT201.000.00--------------------------------1.00---
........................................................AAGGCCTGAAGGCTGCGAGA..............................................................................................................................................................................201.000.00-1.00----------------------------------
....................................................................................................................................................................................TATTGCCCTTGACCCGGCC...................................................191.000.00--------1.00---------------------------
...........................................................................................................................................................................................................AATGGCACAGTGAAGAACTG...........................201.000.00--------1.00---------------------------
......................................................................................................................................................................................................................GAAGAAGGCCATTGCACA..................181.000.00------------------------1.00-----------
......................................................................................................................................................................................................................................CAGATGACACAGAGCCTG..1840.500.50-----------------0.25----------------0.25-
........................................................................................................................................................................................................................................GATGACACAGAGCCTG..1690.110.11-----------------------------------0.11

Antisense strand
AGACCCCTCCTCAGCAGTCCTCAGAGGAGCCCATGCTGTGCCCCACTTTGTCCTTGAAGGCCTGAAGGCTGCGGTTTAGATAGGGGCTGTGGGCTCACGTTGGTTAGGCACATCCCTGGAGGTGAGATGGATCCTACCCACAGTGGTGGTGGCCTTGCTGCCAGCCCATGCTGGCACCCTTATTGCCCTTGACCCCACAGGAGAATGGCACAGTGAAGAAGGCCATTGCCCAGATGACACAGAGCCTGTT
...................................................((.....((((....))))..)).........((((((..(((...........((((.((((.(((..((((.((....)).))))..))).))))...)))).)))..))))))...................................................................................
..................................................51....................................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR040030(GSM532915)
G013N. (cervix)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040011(GSM532896)
G529T. (cervix)
SRR343336DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR343335SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................TTTAGATAGGGGCTGGA............................................................................................................................................................... 171.000.00-----------------------------1.00------
..ACCCCTCCTCAGCAGTGT...................................................................................................................................................................................................................................... 181.000.00-------------------------------1.00----
.........................................................................................................................................................................................................................................ATGACACAGAGCCTGGGG 181.000.00----------------------------1.00-------
.GACCCCTCCTCAGCAGGTG...................................................................................................................................................................................................................................... 191.000.00--------------------1.00---------------