ID: uc001isb.2_intron_23_0_chr10_24959327_r.3p
GENE: ARHGAP21(2)
chr10:24959277-24959526-


(3)
B-CELL 		(11)
BRAIN 		(10)
BREAST 		(14)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TTCTAGGTTTTGATAATTGCTTGCTTTGTTATAATAATATAATAAATTTTAGTTTTTGATAATTGCATGCTTTGTGTAGTTTATGCATCAGAAAATAGTTCATATCGGCGCTCAGGTATTAACATTTTTACATAGAATTTTTTTAGATGAGGAAGTATATTGTGTTATGTAGTTAACTTTTAAATATCTTTTCACTTTAGGTCTCAAAAAATAAAGATGGAAAAGAACAAAGTGAAACTGTATCACTGTC
.....................................................................................................(((((........)))))..((((...((((....((((((((....))))))))....))))..))))................................................................................
..................................................................................................99......................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189784GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029128(GSM416757)
H520. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)
...................................................................................................................................................TGAGGAAGTATATTGTATAG...................................................................................20192.000.00178.00-2.001.00---2.00-1.00------1.00---1.001.001.00--1.00---1.00-------1.001.00---------------------
...................................................................................................................................................TGAGGAAGTATATTGTAAAG...................................................................................2051.000.0051.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTATAC...................................................................................2023.000.0022.00-1.00---------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTATAT...................................................................................2019.000.0015.00-1.00-1.001.001.00-----------------------------------------------------
....................................................................................................................................................................................................................AAAGATGGAAAAGAATTTT...................1915.000.00-14.00----------------------------1.00-----------------------------
...................................................................................................................................................TGAGGAAGTATATTGTAGAG...................................................................................2012.000.0011.00--------------1.00--------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTACAG...................................................................................209.000.009.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTAAAT...................................................................................209.000.009.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTATTG...................................................................................208.000.008.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTTTAG...................................................................................207.000.005.00------1.00---------------------------1.00------------------------
...................................................................................................................................................TGAGGAAGTATATTGTAT.....................................................................................186.000.001.00-----------1.001.00--1.00----------1.00--------------1.00-----------------
...................................................................................................................................................TGAGGAAGTATATTGTATA....................................................................................196.000.002.00---------1.00---1.00--------1.00--1.00---------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTAGAC...................................................................................206.000.006.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTGTAGTT.................................................................................225.000.001.00--2.00-1.001.00-----------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTATCG...................................................................................205.000.004.00---------1.00-------------------------------------------------
....................................................................................................................................................................................................................AAAGATGGAAAAGAATTT....................185.000.00-5.00----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTAAAC...................................................................................205.000.005.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTATAA...................................................................................204.000.001.00---1.001.00--------1.00---------------------------------------------
....................................................................................................................................................GAGGAAGTATATTGTATAG...................................................................................194.000.004.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTAATG...................................................................................203.000.003.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTCTAG...................................................................................203.000.003.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTAA.....................................................................................183.000.002.00-----------1.00-----------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTA......................................................................................172.000.00----1.00-------------------1.00-----------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTGTTGTT.................................................................................222.000.00-------------------1.00-----------1.00----------------------------
........................................................................................................................................................................................................................................TGAAACTGTATCACTCTG182.000.00----------------------------1.00----------1.00--------------------
...................................................................................................................................................TGAGGAAGTATATTGTACAC...................................................................................202.000.002.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTGTAGT..................................................................................212.000.00---------1.00--------1.00-----------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTGTGGTT.................................................................................222.000.00------1.00---------------------------------1.00-------------------
...................................................................................................................................................TGAGGAAGTATATTGTATGG...................................................................................201.000.001.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTG......................................................................................1711.001.00------------------------------------1.00-----------------------
...................................................................................................................................................TGAGGAAGTATATTGTATG....................................................................................191.000.00---------------------------------1.00--------------------------
..................................................................................................................................................................................................................ATAAAGATGGAAAAGAACAAA...................2121.001.00-----------1.00------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTCGCG...................................................................................201.000.001.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTCTT....................................................................................191.000.00---1.00--------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTATCC...................................................................................201.000.001.00-----------------------------------------------------------
.......................................................................................................ATCGGCGCTCAGGTATTAACATTTT..........................................................................................................................2511.001.00--------1.00---------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTAGAA...................................................................................201.000.001.00-----------------------------------------------------------
..................................................................................................................................................................................................................ATAAAGATGGAAAAGAACA.....................1921.001.00---------0.50--------0.50-----------------------------------------
......................................................................................................................................................................................................................AGATGGAAAAGAACAAAGTGAAACTGT.........2721.001.00--------1.00---------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTCT.....................................................................................181.000.001.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTTCTG...................................................................................201.000.001.00-----------------------------------------------------------
....................................................................................................................................................................................................................AAAGATGGAAAAGAATTTC...................191.000.00----------------------------------1.00-------------------------
...................................................................................................................................................TGAGGAAGTATATTGTGTAA...................................................................................201.000.001.00-----------------------------------------------------------
..................................................................................................................................................................................................................ATAAAGATGGAAAAGAAGAAA...................211.000.00-----------1.00------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTACAT...................................................................................201.000.001.00-----------------------------------------------------------
.......................CTTTGTTATAATAATTTTA................................................................................................................................................................................................................191.000.00-----------------1.00------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTCGA....................................................................................191.000.001.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTATTT...................................................................................201.000.001.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTCGAG...................................................................................201.000.001.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTTTTG...................................................................................201.000.001.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTGTATAT.................................................................................221.000.00----1.00-------------------------------------------------------
........................................AATAAATTTTAGTTTTTTGTT.............................................................................................................................................................................................211.000.00-----------------1.00------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTAG.....................................................................................181.000.00---1.00--------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTTTTT...................................................................................201.000.001.00-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGTGTGGAT.................................................................................221.000.00---------------1.00--------------------------------------------
....................................................................................................................................................GAGGAAGTATATTGTATAA...................................................................................191.000.001.00-----------------------------------------------------------
......................................................................................................................................................................................................................................AGTGAAACTGTATCACTGT.1930.670.67---------------------------------------------0.67--------------
...................................................................................................................................................................................................................TAAAGATGGAAAAGAACAAAG..................2120.500.50--------------------------------------------0.50---------------
...............................................................................................................................................................................................................AAAATAAAGATGGAAAAGAACAAAGTGAAACT...........3220.500.50-------------------------------------------------0.50----------
...............................................................................................................................................................................................................AAAATAAAGATGGAAAAGAACAAAGT.................2620.500.50-----------------------------------------------0.50------------
...............................................................................................................................................................................................................AAAATAAAGATGGAAAAGAACA.....................2220.500.50-------------0.50----------------------------------------------
..................................................................................................................................................................................................................ATAAAGATGGAAAAGAACAAATT.................2320.501.00-----------------------------------------------------0.50------
..................................................................................................................................................................................................................ATAAAGATGGAAAAGAACAAAGTGAAACTGTAT.......3320.500.50------------------------------------------------0.50-----------
.........................................................................................................................................................................................................................TGGAAAAGAACAAAGTGAAACT...........2220.500.50--------0.50---------------------------------------------------
...................................................................................................................................................................................................................TAAAGATGGAAAAGAACAAAGTGAAACTG..........2920.500.50------------------------------------------------------0.50-----
.................................................................................................................................................................................................................AATAAAGATGGAAAAGAACAAAGTG................2520.500.50----------------------------------------------------0.50-------
..........................................................................................................................................................................................................................GGAAAAGAACAAAGTGAAACT...........2120.500.50--------------------------------------------------0.50---------
..................................................................................................................................................................................................................ATAAAGATGGAAAAGAACAAAGT.................2320.500.50--------0.50---------------------------------------------------
.................................................................................................................................................................................................................AATAAAGATGGAAAAGAACA.....................2020.500.50-------------0.50----------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGAATA....................................................................................1990.440.110.33--------------------------------------------------------0.11--
...............................................................................................................................................................................................................................AGAACAAAGTGAAACTG..........1780.380.38-------------------------------------------------------0.38----
..............................................................................................................................................................................................................................AAGAACAAAGTGAAACTG..........1840.250.25--------------------------------------------------------0.25---
.....................................................................................................................................................................................................................AAGATGGAAAAGAACAAAGT.................2040.250.25--------------------------------------------0.25---------------
....................................................................................................................................................................................................................AAAGATGGAAAAGAACA.....................1760.170.17----------0.17-------------------------------------------------
...................................................................................................................................................................................................................TAAAGATGGAAAAGAAC......................1770.140.14----------------------------------------------0.14-------------
...................................................................................................................................................TGAGGAAGTATATTGCAT.....................................................................................1890.110.11-----------------------------------------------------------0.11
...................................................................................................................................................TGAGGAAGTATATTGCA......................................................................................1790.110.11------------------0.11-----------------------------------------
.......................................................................................................................................................................................................................GATGGAAAAGAACAAAG..................1790.110.11----------------------------------------------------------0.11-
...................................................................................................................................................TGAGGAAGTATATTGCCTA....................................................................................1990.110.11-------------------0.11----------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGAAAG....................................................................................1990.110.110.11-----------------------------------------------------------
...................................................................................................................................................TGAGGAAGTATATTG........................................................................................1590.110.11--------------------0.11---------------------------------------
...................................................................................................................................................TGAGGAAGTATATTGGATT....................................................................................1990.110.110.11-----------------------------------------------------------

Antisense strand
TTCTAGGTTTTGATAATTGCTTGCTTTGTTATAATAATATAATAAATTTTAGTTTTTGATAATTGCATGCTTTGTGTAGTTTATGCATCAGAAAATAGTTCATATCGGCGCTCAGGTATTAACATTTTTACATAGAATTTTTTTAGATGAGGAAGTATATTGTGTTATGTAGTTAACTTTTAAATATCTTTTCACTTTAGGTCTCAAAAAATAAAGATGGAAAAGAACAAAGTGAAACTGTATCACTGTC
.....................................................................................................(((((........)))))..((((...((((....((((((((....))))))))....))))..))))................................................................................
..................................................................................................99......................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189784GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029128(GSM416757)
H520. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)
................................................................................................................................................................................................................................GAACAAAGTGAAACTGGTG....... 191.000.00--------------------------------1.00---------------------------
.............................................................................................................................................................................................................AAAAAATAAAGATGGAAAAGATCAG.................... 251.000.00-------------------------------------------1.00----------------
......................................................................TTTGTGTAGTTTATGAAAG................................................................................................................................................................. 191.000.00--1.00---------------------------------------------------------
..........................................................CACAAAGCATGCAATTAT.............................................................................................................................................................................. 1820.500.50---------------------------------------------------0.50--------
.........................................................CACAAAGCATGCAATTATC.............................................................................................................................................................................. 1920.500.50----------------------------------------------0.50-------------