ID: uc001ioo.2_intron_40_0_chr10_17083220_r.3p
GENE: (26)
chr10:17083170-17083419-


(6)
BREAST
(8)
CELL-LINE
(2)
CERVIX
(1)
KIDNEY
(1)
LIVER
(6)
OTHER
(54)
SKIN

Sense strand
TCACTATGAAAATACTGCACCAAATATATATGTGTGTGTGTCTCTGTGTGTGTATATATACACACACATATATACACATCATATATGTGTGTGTGTACATACACAGATGATTTTTATTTATTTTTTTTAAAGGAAAATCTCATCTTGGAGCACTTATGAAGTATATAATAGTGGTTCTTAACAGTCATTTCTTTTTCCAGCATGTGAGAATGTGGTAATAGTCAATCAAACCTATGGCATCTTAGAGAGT
..........................................................((((((((((((((((.......)))))))))))))))).......(((((((((((.((((.......)))).)))))..)))))).(((.((((...............)))).))).........................................................................
.........................................................58.......................................................................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR029129(GSM416758)
SW480. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925PAZD5SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................................................AGTGGTTCTTAACAGT.................................................................16550.4050.40-5.401.603.403.802.602.602.602.202.202.001.601.801.401.000.201.200.201.001.00--------0.401.000.40-----0.800.60-0.600.800.600.600.600.600.400.200.400.400.40-0.200.200.400.400.400.20-0.20-0.200.20-0.20-0.20--0.20----0.200.200.200.20-
..............................................................CACACATATATACACATCATAT......................................................................................................................................................................22111.0011.0011.00-----------------------------------------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTCAACAG...........................................................222.000.00--1.00--------------1.00------------------------------------------------------------
.............................................................ACACACATATATACACATCATAT......................................................................................................................................................................2312.002.002.00-----------------------------------------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTCT..............................................................1951.2050.40--------------0.20----------------------0.20-0.20----------0.200.20--------------0.20-----------
.......................................................................................................................ATTTTTTTTAAAGGAAACAAA..............................................................................................................211.000.00---------------------1.00--------------------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTCCAAC............................................................211.000.00--------------------1.00---------------------------------------------------------
.......................................................ATATACACACACATATATTCG..............................................................................................................................................................................211.000.001.00-----------------------------------------------------------------------------
................................................................................................................TTTATTTATTTTTTTTAAATCGT...................................................................................................................231.000.00--------------------------------1.00---------------------------------------------
..............................................................CACACATATATACACATCTGT.......................................................................................................................................................................211.000.00-----------------------1.00------------------------------------------------------
...................................................................................................................................................................................AACAGTCATTTCTTTTGGTG...................................................201.000.001.00-----------------------------------------------------------------------------
.........................................................ATACACACACATATATACACATC..........................................................................................................................................................................2311.001.001.00-----------------------------------------------------------------------------
..............................................................................................................TTTTTATTTATTTTTTTTAAACAG....................................................................................................................241.000.00-----------------------------------1.00------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGGTCA..............................................................191.000.00-------------------------------1.00----------------------------------------------
........................................................................................................................TTTTTTTTAAAGGAAAATCCAA............................................................................................................221.000.00----------------------------------1.00-------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTCCA.............................................................2050.8050.40-----0.20--------------------------------0.20-----------------------0.20--------0.20------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTAG..............................................................1950.8050.40--0.20----------0.20--------------0.20-0.20-----------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTGC...............................................................1850.6050.40--0.400.20--------------------------------------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTCAT.............................................................2050.6050.40----------------------------------------------0.20-----------------0.20----0.20--------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTGG..............................................................1950.4050.40--------------0.20---------------------------------------------------------0.20-----
.........................................................................................................................................................................AGTGGTTCTTAACAGTTAA..............................................................1950.4050.40-------------------------------------------------------------------0.20--0.20-------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTCAG.............................................................2050.4050.40------------------------------0.20---------------------0.20-------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTCG..............................................................1950.4050.40--0.20-----------------------------------------------0.20---------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTCGA.............................................................2050.4050.40--------------------------------------0.40---------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTTAA.............................................................2050.2050.40----------------------------0.20-------------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTCAC.............................................................2050.2050.40-----------------------------------------------------------0.20------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTAT..............................................................1950.2050.40---0.20--------------------------------------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTGA..............................................................1950.2050.40---------------------------------------------------------0.20--------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTG...............................................................1850.2050.40------------------------------0.20-----------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTAAA.............................................................2050.2050.40----------------------------0.20-------------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTGC..............................................................1950.2050.40-----------0.20------------------------------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTTA..............................................................1950.2050.40--------------------------------------0.20---------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTTCC..............................................................1950.2050.40-----------------------------------------------------------------------------0.20

Antisense strand
TCACTATGAAAATACTGCACCAAATATATATGTGTGTGTGTCTCTGTGTGTGTATATATACACACACATATATACACATCATATATGTGTGTGTGTACATACACAGATGATTTTTATTTATTTTTTTTAAAGGAAAATCTCATCTTGGAGCACTTATGAAGTATATAATAGTGGTTCTTAACAGTCATTTCTTTTTCCAGCATGTGAGAATGTGGTAATAGTCAATCAAACCTATGGCATCTTAGAGAGT
..........................................................((((((((((((((((.......)))))))))))))))).......(((((((((((.((((.......)))).)))))..)))))).(((.((((...............)))).))).........................................................................
.........................................................58.......................................................................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR029129(GSM416758)
SW480. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925PAZD5SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................ATATATATGTGTGTGTGTCCGC............................................................................................................................................................................................................. 221.000.001.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................GTGAGAATGTGGTAACTG............................. 181.000.00---------------------------------1.00--------------------------------------------
.............................................................................................................................................................................................................GAGAATGTGGTAATAG............................. 161.000.001.00-----------------------------------------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTGT............................................................... 1851.000.00------------------------1.00-----------------------------------------------------
.................................................................................................................TAAAAAAAATAAATAA......................................................................................................................... 1601.001.00--------------------------1.00---------------------------------------------------
............................................................................................................................................................................GGTTCTTAACAGTCATTTCTG......................................................... 211.000.00---------------1.00--------------------------------------------------------------
........................TATATATGTGTGTGTGTCCC.............................................................................................................................................................................................................. 201.000.001.00-----------------------------------------------------------------------------
.........................................................ATACACACACATATATACG.............................................................................................................................................................................. 191.000.00-------------------------1.00----------------------------------------------------
................................TGTGTGTGTCTCTGTGTGATG..................................................................................................................................................................................................... 211.000.00--1.00---------------------------------------------------------------------------
.......................ATATATATGTGTGTGTCCCG............................................................................................................................................................................................................... 201.000.00---------------------------1.00--------------------------------------------------
.........................................................................................................................................................................AGTGGTTCTTAACAGTGGT.............................................................. 1951.000.00----------------------1.00-------------------------------------------------------