ID: uc001imm.2_intron_5_0_chr10_13538889_r.3p
GENE: BEND7(3)
chr10:13538839-13539088-


(1)
B-CELL
(1)
BREAST
(10)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
LIVER
(4)
OTHER
(1)
RRP40.ip
(1)
SKIN

Sense strand
TGGATAATTAGATAAAGTCAGACCCCCAGATTTAGGTTGTGATAATTAGTGGGTACGTTTTCCTTAGGCACAGCTTCATCATAATTGCACATGCTTCAAAATCCTGCCAAGATACTTTCTTTTTTCTCTCCACCTCTTTATGATTTTTTTTTTTTTTTTTGGTTTGTTTGGAGTATGTCATTCTTTTCTTTCATGCTCAGGAGAACTTCCAGTGGTGAATTCATCAGCTGGATCAAACTGCTGTACTTGT
......................................................................................((....))..............((((.....)))).................................................................................................................................
.....................................................................................86........................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189784SRR029128(GSM416757)
H520. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR343334SRR040018(GSM532903)
G701N. (cervix)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR343335SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................................................................................CTCTTTATGATTTTTTTTTAACA..............................................................................................233.000.00--3.00-----------------
..............................................................................................................................................ATTTTTTTTTTTTTTTTTGGGGC.....................................................................................233.000.002.001.00------------------
..........................................................................................ATGCTTCAAAATCCTTCA..............................................................................................................................................182.000.00-----2.00--------------
...............................................................................................................ATACTTTCTTTTTTCGG..........................................................................................................................172.000.002.00-------------------
..............................................................................................................................................ATTTTTTTTTTTTTTTTTGGGCCC....................................................................................242.000.001.001.00------------------
.........................................................................................................................................TTATGATTTTTTTTTTTTTTCGAG.........................................................................................242.000.002.00-------------------
.....................................................................................................................................CTCTTTATGATTTTTTTTTTTTAAC............................................................................................252.000.00-2.00------------------
...........................................................................................................................................ATGATTTTTTTTTTTTTCTGG..........................................................................................211.000.001.00-------------------
..............................................................................................................................................ATTTTTTTTTTTTTTTTTGGTTTTTTC.................................................................................271.000.001.00-------------------
...............................................................................................................ATACTTTCTTTTTTCTAG.........................................................................................................................181.000.001.00-------------------
.......................................................................................................................................CTTTATGATTTTTTTTTTTTCCAA...........................................................................................241.000.00-1.00------------------
............................................................................................................................................TGATTTTTTTTTTTTTTTTTGGGG......................................................................................241.000.001.00-------------------
..............................................................................................................................................ATTTTTTTTTTTTTTTTTGGTTTTTGC.................................................................................271.000.00-1.00------------------
.......................................................................................................................................CTTTATGATTTTTTTTTTTTAACA...........................................................................................241.000.00--1.00-----------------
...........................................................................................................................................ATGATTTTTTTTTTTTTTTTATTT.......................................................................................241.000.00-1.00------------------
...........................................................................................................................................ATGATTTTTTTTTTTTTTTTCTT........................................................................................231.000.001.00-------------------
................................................................................................................................................TTTTTTTTTTTTTTTTGGTTTGCG..................................................................................241.000.00-1.00------------------
..............................................................................................................................................ATTTTTTTTTTTTTTTTTGGTTTTTGG.................................................................................271.000.00-1.00------------------
...........................................................................................................................................................TTTTTGGTTTGTTTGATC.............................................................................181.000.00--1.00-----------------
...........................................................................................................................................ATGATTTTTTTTTTTTTTTTTGGGAGC....................................................................................271.000.001.00-------------------
.........................................................................................................................................TTATGATTTTTTTTTTTTCGAG...........................................................................................221.000.001.00-------------------
.........................................................................................................................................TTATGATTTTTTTTTTTTTGATC..........................................................................................231.000.001.00-------------------
...........................................................................................................................................ATGATTTTTTTTTTTTTTTTTGGGAG.....................................................................................261.000.001.00-------------------
...............................................................................................................ATACTTTCTTTTTTCTCTTAG......................................................................................................................211.000.001.00-------------------
............................................................................................................................................TGATTTTTTTTTTTTTTTTTCTGG......................................................................................241.000.00-1.00------------------
...............................................................................................................ATACTTTCTTTTTTCTAATT.......................................................................................................................201.000.00------------------1.00-
..........................................................................................................................................TATGATTTTTTTTTTTTTTCGG..........................................................................................221.000.00-1.00------------------
............................................................................................................................................TGATTTTTTTTTTTTTTTTTCGC.......................................................................................231.000.00-1.00------------------
......................................................................................................................................TCTTTATGATTTTTTTTTTTTGAG............................................................................................241.000.001.00-------------------
..............................................................................................................................................ATTTTTTTTTTTTTTTTTGGGATT....................................................................................241.000.001.00-------------------
.......................................................................................................................................................TTTTTTTTTGGTTTGTTTGGAGT............................................................................2311.001.001.00-------------------
.....................................................................................................................................CTCTTTATGATTTTTTTTTTTTAACA...........................................................................................261.000.001.00-------------------
...............................................................................................................................................TTTTTTTTTTTTTTTTTGGTTTGTTTCTC..............................................................................291.000.001.00-------------------
.....................................................................................................................................CTCTTTATGATTTTTTTTTTTTTAAC...........................................................................................261.000.00-1.00------------------
..............................................................................................................................................ATTTTTTTTTTTTTTTTTGGTTGCCC..................................................................................261.000.001.00-------------------
.......................................................................................................................................CTTTATGATTTTTTTTTTTTTCCTG..........................................................................................251.000.001.00-------------------
.............................................................................................................AGATACTTTCTTTTTTTGC..........................................................................................................................191.000.001.00-------------------
.................................................................................................................................................TTTTTTTTTTTTTTTGGTTTGCG..................................................................................231.000.00---1.00----------------
...............................................................................................................ATACTTTCTTTTTTCTCTCCACCTCTTCATG............................................................................................................311.000.00-------------------1.00
................................................................................................................................................TTTTTTTTTTTTTTTTGGTTTGTTTCGT..............................................................................281.000.001.00-------------------
.........................................................................................................................................TTATGATTTTTTTTTTTTTCGAG..........................................................................................231.000.00-1.00------------------
...........................................................................................................................................ATGATTTTTTTTTTTTTTTTTGGTAGC....................................................................................271.000.001.00-------------------
..............................................................................................................................................ATTTTTTTTTTTTTTTTTGGTTTCTTG.................................................................................271.000.001.00-------------------
.................................................................................................................................................TTTTTTTTTTTTTTTGGTTTGTTGGTC..............................................................................271.000.001.00-------------------
......................................................................................................................................................TTTTTTTTTTGGTTTGTCGAC...............................................................................211.000.001.00-------------------
.........................................................................................................................................TTATGATTTTTTTTTTTTTTTCGAG........................................................................................251.000.00-1.00------------------
...........................................................................................................................................ATGATTTTTTTTTTTTTTCGGC.........................................................................................221.000.001.00-------------------
...................................................................................................................................................TTTTTTTTTTTTTGGTTTGTTTCGG..............................................................................251.000.001.00-------------------
............................................................................................................................................TGATTTTTTTTTTTTTTTTTCGGC......................................................................................241.000.001.00-------------------
..............................................................................................................................................ATTTTTTTTTTTTTTTTTGGGATA....................................................................................241.000.001.00-------------------
.........................................................................................................................................TTATGATTTTTTTTTTTAACA............................................................................................211.000.00--1.00-----------------
.............................................................................................................................................GATTTTTTTTTTTTTTTTTGGTTTTTG..................................................................................271.000.00-1.00------------------
.......................................................................................................................................CTTTATGATTTTTTTTTTTCCTA............................................................................................231.000.00-1.00------------------
............................................................................................................................................TGATTTTTTTTTTTTTTTTTGGGGTG....................................................................................261.000.001.00-------------------
.......................................................................................................................................................TTTTTTTTTGGTTTGTCTC................................................................................191.000.001.00-------------------
.................................................TGGGTACGTTTTCCTTAGGCACAG.................................................................................................................................................................................2411.001.00-1.00------------------
.....................................................................................................................................CTCTTTATGATTTTTTTTTTTTAATA...........................................................................................261.000.00--1.00-----------------
............................................................................................................................................TGATTTTTTTTTTTTTTTTTGGGAGG....................................................................................261.000.00-1.00------------------
............................................................................................................................................TGATTTTTTTTTTTTTTTTTGTTTT.....................................................................................251.000.00---1.00----------------
...................................................................................................................................................TTTTTTTTTTTTTGGTTTGTTTCATT.............................................................................261.000.00-1.00------------------
................................................................................................................................................................................GTCATTCTTTTCTTTCTTTG......................................................201.000.00-----------1.00--------
.......................................................................................................................................CTTTATGATTTTTTTTTTAACA.............................................................................................221.000.00--1.00-----------------
........................................................................................................................................TTTATGATTTTTTTTTTTTTTCGAG.........................................................................................251.000.00-1.00------------------
.........................................................................................................................................TTATGATTTTTTTTTTTTTGGG...........................................................................................221.000.001.00-------------------
..................................................................................................................................................TTTTTTTTTTTTTTGGTTTGTTTCGT..............................................................................261.000.001.00-------------------
...................................................................................................................TTTCTTTTTTCTCTCGGTC....................................................................................................................191.000.001.00-------------------
...........................................................................................................................................ATGATTTTTTTTTTTTTTTTTGGG.......................................................................................241.000.001.00-------------------
.....................................................................................................................................................TTTTTTTTTTTGGTTTGTTTCGT..............................................................................231.000.001.00-------------------
............................................................................................................................................TGATTTTTTTTTTTTTTTTTGGAGCG....................................................................................261.000.00-1.00------------------
............................................................................................................................................TGATTTTTTTTTTTTTTTTTCTGC......................................................................................241.000.001.00-------------------
.......................................................................................................................................CTTTATGATTTTTTTTTTTTCTAC...........................................................................................241.000.00--1.00-----------------
...............................................................................................................................................TTTTTTTTTTTTTTTTTGGTTTGTTTCCG..............................................................................291.000.00---1.00----------------
..............................................................................................................................................ATTTTTTTTTTTTTTTTTGGTTGGGC..................................................................................261.000.001.00-------------------
.............AAAGTCAGACCCCCAGATTTAGGTTGTGATA..............................................................................................................................................................................................................3111.001.00-----------------1.00--
............................................................................................................................................TGATTTTTTTTTTTTTTTTTGGGTT.....................................................................................251.000.001.00-------------------
..............................................................................................................................................ATTTTTTTTTTTTTTTTTGGGAGC....................................................................................241.000.001.00-------------------
............................................................................................................................................TGATTTTTTTTTTTTTTTTTGGGGGG....................................................................................261.000.001.00-------------------
................................................................................................................TACTTTCTTTTTTCTCTCCACCTCTTTATG............................................................................................................3011.001.00---------1.00----------
..........................................................................................................................................TATGATTTTTTTTTTTTTTTTTGG........................................................................................2430.330.330.33-------------------
..........................................................................................................................................TATGATTTTTTTTTTTTTTTTTGGG.......................................................................................2530.330.330.33-------------------

Antisense strand
TGGATAATTAGATAAAGTCAGACCCCCAGATTTAGGTTGTGATAATTAGTGGGTACGTTTTCCTTAGGCACAGCTTCATCATAATTGCACATGCTTCAAAATCCTGCCAAGATACTTTCTTTTTTCTCTCCACCTCTTTATGATTTTTTTTTTTTTTTTTGGTTTGTTTGGAGTATGTCATTCTTTTCTTTCATGCTCAGGAGAACTTCCAGTGGTGAATTCATCAGCTGGATCAAACTGCTGTACTTGT
......................................................................................((....))..............((((.....)))).................................................................................................................................
.....................................................................................86........................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189784SRR029128(GSM416757)
H520. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR343334SRR040018(GSM532903)
G701N. (cervix)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
TAX577746(Rovira)
total RNA. (breast)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR343335SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................................................TTTATGATTTTTTTTTTCCAG............................................................................................. 212.000.00----2.00---------------
............................................................................................................................TCTCTCCACCTCTTTCTTA........................................................................................................... 192.000.00------2.00-------------
.............................................TTAGTGGGTACGTTTACAG.......................................................................................................................................................................................... 192.000.00-------1.00-------1.00----
.................TCAGACCCCCAGATTGGT....................................................................................................................................................................................................................... 182.000.00---1.00----------1.00-----
.............................ATTTAGGTTGTGATAATCC.......................................................................................................................................................................................................... 191.000.00----1.00---------------
.................................................................................................................................................................................TCATTCTTTTCTTTCGAAG...................................................... 191.000.00------------1.00-------
.................................................................................................................................................................................................CCACTGGAAGTTCTCCTGAGCA................................... 2211.001.00----------1.00---------
............................................................................................................................................TGATTTTTTTTTTTTTTTTTGGTCG..................................................................................... 251.000.00----------------1.00---
..........................................................................................................................................................................................TCTTTCATGCTCAGGAGGT............................................. 191.000.00-------------1.00------
....................................................................CACAGCTTCATCATATAA.................................................................................................................................................................... 181.000.00--------1.00-----------