| (1) B-CELL | (1) BREAST | (9) CELL-LINE | (1) FIBROBLAST | (1) HEART | (6) HELA | (1) LIVER | (2) OTHER | (2) SKIN | (1) TESTES | (1) XRN.ip |
| TTTCGATACAGGGAATCTAAAACTATGGCACCACCAGCTCATAAAAGCATGTAAGTAATTATGTGCATGCTTTGTTTTACTGAATTTGTTCCTTTTACTCTTGTAAACATGTTCTTTTTCTTTCTTTTTCTGCTAGACTTGAACGCAGTGAAAATGGTAAGAAATAGTTCATTGATTCTTTTAGGT .................................................................................((((.(((.....((((....))))))).))))........................................................................ ...............................................................................80......................................................136................................................ | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189782 | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR189783 | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR191545(GSM715655) 139genomic small RNA (size selected RNA from . (breast) | SRR363676(GSM830253) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR553576(SRX182782) source: Testis. (testes) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033711(GSM497056) GCB DLBCL (GCB110). (B cell) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR444050(SRX128898) Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTAAGTAATTATGTGCATGCTTTGTTTTACTGAATTTGTTCCTTTTACTCTTGTAAACATGTTCTTTTTCTTTCTTTTTCTGCTAG.................................................. | 86 | 1 | 215.00 | 215.00 | 142.00 | 64.00 | - | 4.00 | 2.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAAGTAATTATGTGCATGCTTTGTTTTACTGAATTTGTTCCTTTTACTCTTGTAAACATGTTCTTTTTCTTTCTTTTTCTGCTAG.................................................. | 85 | 1 | 13.00 | 13.00 | 5.00 | 6.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAAGTAATTATGTGCATGCTTTGTTTTACTGAATTTGTTCCTTTTACTCTTGTAAACATGTTCTTTTTCTTTCTTTTTCTGCTAGA................................................. | 87 | 1 | 9.00 | 9.00 | - | 8.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................TGAACGCAGTGAAAATG.............................. | 17 | 1 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................GTAAGTAATTATGTGCATGCTTTGTTTTACTGAATTTGTTCCTTTTACTCTTGTAAACATGTTCTTTTTCTTTCTTTTTCTG...................................................... | 82 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................AGACTTGAACGCAGTGAAAATGGTAAGAAA...................... | 30 | 1 | 3.00 | 3.00 | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................TTTGTTCCTTTTACTCTAGGG................................................................................. | 21 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TAAGTAATTATGTGCATGCTTTGTTTTACTGAATTTGTTCCTTTTACTCTTGTAAACATGTTCTTTTTCTTTCTTTTTCTGCTAGA................................................. | 86 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....ATACAGGGAATCTAAAACT.................................................................................................................................................................. | 19 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........GGGAATCTAAAACTATGGCACCACCAGC.................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................TTCTTTTTCTTTCTTTTGGTT...................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................TAAAAGCATGTAAGTATAG.............................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................CAGCTCATAAAAGCATGTGGAC.................................................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..................................................GTAAGTAATTATGTGCATGCTTTGTTTTACTGAATTTGTTCCTTTTACTCTTGTAAACATGTTCTTTTTCTTTCTTTTTCTGCTAGT................................................. | 87 | 1 | 1.00 | 215.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................ATGCTTTGTTTTACTGAATTTGTTCCTTTC.......................................................................................... | 30 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..TCGATACAGGGAATCTAA...................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ............................................................................TTACTGAATTTGTTCCTTTTACTCTT.................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...........................................................................................................................................TGAACGCAGTGAAAATGGTAAGAA....................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................TTCTTTTTCTTTCTTTTTCCTGA.................................................... | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................TTCTTTTTCTTTCTTTTTCCCG..................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .................................................................................................................CTTTTTCTTTCTTTTTCCAG..................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ...............................................................................................................TTCTTTTTCTTTCTTTTTCCCTG.................................................... | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................TTTTTCTTTCTTTTTCTGGC.................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................TTCTTTTTCTTTCTTTTTCTGGG.................................................... | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................AACATGTTCTTTTTCTTTCTTTTTCCG...................................................... | 27 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......ACAGGGAATCTAAAACTATGG.............................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ....GATACAGGGAATCTAAAAC................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................TAAAAGCATGTAAGTATTG.............................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................GTAAGTAATTATGTGCATGCTTTGTTTTACTGAATTTGTTCCTTTTACTCTTGTAAACATGTTCTTTTTCTTTCTTTTTCTGCTAC.................................................. | 86 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................TCTGCTAGACTTGAACGCAGTGAAAATG.............................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................CTGCTAGACTTGAACGCAGTGAAAATG.............................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...........................................................TATGTGCATGCTTTGTTTTACTGAATTTGTTCCTTTTACTCTTGTAAACATGTTCTTTTTCTTTCTTTTTCTGCTAG.................................................. | 77 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................TAAAAGCATGTAAGTGCAG.............................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................TCTTTCTTTTTCTGCTAG.................................................. | 18 | 3 | 0.67 | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....ATACAGGGAATCTAAAA.................................................................................................................................................................... | 17 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| TTTCGATACAGGGAATCTAAAACTATGGCACCACCAGCTCATAAAAGCATGTAAGTAATTATGTGCATGCTTTGTTTTACTGAATTTGTTCCTTTTACTCTTGTAAACATGTTCTTTTTCTTTCTTTTTCTGCTAGACTTGAACGCAGTGAAAATGGTAAGAAATAGTTCATTGATTCTTTTAGGT .................................................................................((((.(((.....((((....))))))).))))........................................................................ ...............................................................................80......................................................136................................................ | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189782 | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR189783 | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR191545(GSM715655) 139genomic small RNA (size selected RNA from . (breast) | SRR363676(GSM830253) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR553576(SRX182782) source: Testis. (testes) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033711(GSM497056) GCB DLBCL (GCB110). (B cell) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR444050(SRX128898) Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin) |
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