ID: uc001ifd.1_intron_5_0_chr1_249150139_r
GENE: (6)
chr1:249150089-249150532-


(3)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(15)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(3)
HELA 		(2)
OTHER 		(27)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TGCTCAGTGATGCCAGCTTATGGACCTACAGCTCCTCCCCAGATGAGCAAGTTGGGGTTGAGGGAGAATGAGCAGAGCAAGAGAGGGAGGCAGCTGGCCTGGCAGTTCATGGCTTTGCAGACTAGAGGGAAGGGCTTGTTAGTGTGGAGGGAAGGGTGGGTTTTGGGGAAGGCAAAAAGAACTAGAGGCTTTGAACTGAGGGGGTGAAAAGGGGTGAAGTCAGGTGCAGGGAGATTGAGGGCTGAAAGCAGATATGAATGGGGAGCCTAGGGTGGGGGTAGGGTTGTTTCAAGTTTGAGATCTTTTCAGTTTAGGGGCTAGGGTCGGGCAGGGGATGGCTGACTGCCCAGAAAGTTAATGCCATCTTCCTCTTTGTTCTCCTTTCAGTAGTGAGCCTGATGCCCCCAGACTACTGCCTTCCCCTGTCACCTGCACACCTAAAGA
................................................................................................................................................................................................................................(((...........(((((((((((((((.((((....((.((((.........)))).))..)))).))))).....))))))))))...(((....)))..)))..................................................................................................................
.......................................................................................................................................................................................................................216..................................................................................................................333.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359175(GSM359175)
hela_5_pct. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
............................................................................................................................................................................................................................CAGGTGCAGGGAGATTGAGGGC..........................................................................................................................................................................................................2217.007.002.00-1.00---1.001.00------------------------1.001.00------------------------------
..............................................................................................................................................................................................................................GGTGCAGGGAGATTGAGGGC..........................................................................................................................................................................................................2015.005.004.00-1.00-------------------------------------------------------------
.................TTATGGACCTACAGCTCCTCCCCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................2615.005.00--------------------1.00-1.00-----------1.00------1.00---1.00------------------
...................................................................................................................................................................................................CTGAGGGGGTGAAAAAAA.......................................................................................................................................................................................................................................185.000.00-----------------1.00-------------------------1.001.00-----1.00--1.00----------
..............AGCTTATGGACCTACAGCTCCTCCCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................2814.004.00---3.00----1.00-------------------------------------------------------
...............................................................................................................................................................................AAAGAACTAGAGGCTTTGAACTGAGG...................................................................................................................................................................................................................................................2613.003.00----3.00-----------------------------------------------------------
.............................................................................................................................................................................................................................AGGTGCAGGGAGATTGAGGGC..........................................................................................................................................................................................................2113.003.00---------------1.00-----------1.00-------------------1.00----------------
................CTTATGGACCTACAGCTCCTCCCCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................2713.003.00------------2.00--------------------------1.00------------------------
..................................................................................................................................................................................................................................................................................................................CAGTTTAGGGGCTAGGGTCGGGC...................................................................................................................2312.002.00-------------2.00--------------------------------------------------
...................................................................................................................................................................................................CTGAGGGGGTGAAAAAAAA......................................................................................................................................................................................................................................192.000.00-----1.00-------------------------------------------------1.00--------
...............GCTTATGGACCTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................1612.002.00-2.00--------------------------------------------------------------
...............GCTTATGGACCTACAGCTCCTCCCC....................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00------------------1.00---------------------------------------------
..............................................................................................................................................................................................................................................................................GGTGGGGGTAGGGTTGTTTCAAGTTTGAGA................................................................................................................................................3011.001.00----------------------------1.00-----------------------------------
..................................................GTTGGGGTTGAGGGAGAATGAGCAGAGCAAGA..........................................................................................................................................................................................................................................................................................................................................................................3211.001.00------1.00---------------------------------------------------------
.............................................................................................................................................................GGGTTTTGGGGAAGGAGGT............................................................................................................................................................................................................................................................................191.000.00-------------------------------------------------1.00--------------
.......................................................................................................................................................................................................................................AGATTGAGGGCTGAAAGCAGATATGA...........................................................................................................................................................................................2611.001.00----------------------------------------------1.00-----------------
.......................................................................................................................................................................................................................................................................................................................................................TGCCCAGAAAGTTAATGCCATCTT.............................................................................2411.001.00-------------------------------1.00--------------------------------
...................................................................................................................................................................................................................................................................................................................................TCGGGCAGGGGATGGC.........................................................................................................1611.001.00-----------------------------1.00----------------------------------
..........................................................................................................................................................................................................................................TTGAGGGCTGAAAGCAGATATG............................................................................................................................................................................................2211.001.00-------------------1.00--------------------------------------------
....................................................................................................GGCAGTTCATGGCTTTGCAGACTAGAGGG...........................................................................................................................................................................................................................................................................................................................2911.001.00-------1.00--------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................CTAGGGTCGGGCAGGGGATGGC.........................................................................................................2211.001.00--1.00-------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................GTTTCAAGTTTGAGAGTG.............................................................................................................................................181.000.00----------------------------------------1.00-----------------------
.....................................................................................................................................................................................................GAGGGGGTGAAAAGGTTA.....................................................................................................................................................................................................................................181.000.00------------------------1.00---------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCCCCTGTCACCTGCACACCTAAAG.2811.001.00----------------1.00-----------------------------------------------
......................................................................................................................................................................................TAGAGGCTTTGAACTCTG....................................................................................................................................................................................................................................................181.000.00-----------------------1.00----------------------------------------
....................................................................................................................................................................................................TGAGGGGGTGAAAAGGGTTGG...................................................................................................................................................................................................................................211.000.00------------------------------------1.00---------------------------
...........................................................................................................................................................................................................................................................................................................................................GGGATGGCTGACTGCCCAGAAAGTTAATGC...................................................................................3011.001.00---------------------------------------------------1.00------------
.......................................................................................................................................................................................................................................AGATTGAGGGCTGAAATTC..................................................................................................................................................................................................191.000.00-------------------------------------1.00--------------------------
.............................................................................................................................AGGGAAGGGCTTGTTAGTTTGG.........................................................................................................................................................................................................................................................................................................221.000.00------------------------------------------1.00---------------------
......GTGATGCCAGCTTATGGACCTACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-------------------------1.00--------------------------------------
...............................................................................................................................................................................AAAGAACTAGAGGCTTTGAACTG......................................................................................................................................................................................................................................................2311.001.00---------------------1.00------------------------------------------
....................................................................................................................................................................................ACTAGAGGCTTTGAACTGAGGGA.................................................................................................................................................................................................................................................231.000.00----1.00-----------------------------------------------------------
......................................................................AGCAGAGCAAGAGAGGGAGGC.................................................................................................................................................................................................................................................................................................................................................................2111.001.00--1.00-------------------------------------------------------------
.............CAGCTTATGGACCTACAGCTCCTCCCCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................3011.001.00------------------------------------------------------1.00---------
..............AGCTTATGGACCTACAGCTCCTCCCCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00-1.00--------------------------------------------------------------
.................................................................................................................TTTGCAGACTAGAGGGAAGGGC.....................................................................................................................................................................................................................................................................................................................2211.001.00---1.00------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................AGTGAGCCTGATGCCCCC......................................1811.001.00-----------------------------------1.00----------------------------
............CCAGCTTATGGACCTACAGCTCCTCCCCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-1.00--------------------------------------------------------------
................CTTATGGACCTACAGCTCCTCCCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.001.00---------------------------------------------------------------
.....................................................................................................................................................................................................................................................................GGAGCCTAGGGTGGGTGAG....................................................................................................................................................................191.000.00--------------------------------------------------------1.00-------
..................................................................................................................................................................................................................................................................................................................CAGTTTAGGGGCTAGGGTCGGGCAGGGGATGGC.........................................................................................................3311.001.00------------------------------------------------1.00---------------
......................................................................................................................................................................................................................................................................................................................TTAGGGGCTAGGGTCGGGCAGGGGATGGC.........................................................................................................2911.001.00----------------------------------------------------1.00-----------
..................TATGGACCTACAGCTCCTCCCCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00--------------------------1.00-------------------------------------
...............................................................................................................................................................................................................................................................................................................................AGGGTCGGGCAGGGGGCA...........................................................................................................181.000.00--------------------------------------1.00-------------------------
.....................................................................................................................................................................................................................................GGAGATTGAGGGCTGAAAGCAGATATG............................................................................................................................................................................................2711.001.00--------1.00-------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CGGGCAGGGGATGGC.........................................................................................................1560.830.830.33-----0.170.17-------------------------------------------------------0.17
..............................................................................................................................................................................................................................................................................................................TTTTCAGTTTAGGGGCT.............................................................................................................................1720.500.50--------------0.50-------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCAGACTACTGCC...........................1650.200.20------------------------------------------------------------0.20---

Antisense strand
TGCTCAGTGATGCCAGCTTATGGACCTACAGCTCCTCCCCAGATGAGCAAGTTGGGGTTGAGGGAGAATGAGCAGAGCAAGAGAGGGAGGCAGCTGGCCTGGCAGTTCATGGCTTTGCAGACTAGAGGGAAGGGCTTGTTAGTGTGGAGGGAAGGGTGGGTTTTGGGGAAGGCAAAAAGAACTAGAGGCTTTGAACTGAGGGGGTGAAAAGGGGTGAAGTCAGGTGCAGGGAGATTGAGGGCTGAAAGCAGATATGAATGGGGAGCCTAGGGTGGGGGTAGGGTTGTTTCAAGTTTGAGATCTTTTCAGTTTAGGGGCTAGGGTCGGGCAGGGGATGGCTGACTGCCCAGAAAGTTAATGCCATCTTCCTCTTTGTTCTCCTTTCAGTAGTGAGCCTGATGCCCCCAGACTACTGCCTTCCCCTGTCACCTGCACACCTAAAGA
................................................................................................................................................................................................................................(((...........(((((((((((((((.((((....((.((((.........)))).))..)))).))))).....))))))))))...(((....)))..)))..................................................................................................................
.......................................................................................................................................................................................................................216..................................................................................................................333.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359175(GSM359175)
hela_5_pct. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
...............................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCCCCTGTCACCACAA.......... 192.000.00-----2.00----------------------------------------------------------
.......................................................................................................................................................TAGTTCTTTTTGCCTTCCCCAAAACCCACCCTT.................................................................................................................................................................................................................................................................... 3311.001.00-----------1.00----------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................AAAGGAGAACAAAGAGGAAGATGGCATTA............................................................ 2911.001.00------------------------------1.00---------------------------------
............................................................................................................TTCCCTCTAGTCTGCAAAGCCAT......................................................................................................................................................................................................................................................................................................................... 2311.001.00-----------1.00----------------------------------------------------
..............................................................................................................................................................................................................................................................................................................TTTTCAGTTTAGGGGCCCG........................................................................................................................... 191.000.00----------1.00-----------------------------------------------------
.................................................................................................................GCCCTTCCCTCTAGTCTGCAAA..................................................................................................................................................................................................................................................................................................................... 2211.001.00--------------1.00-------------------------------------------------
...CATAAGCTGGCATCACTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................... 1911.001.00---------1.00------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCCTTCCCCTGTCAG............... 181.000.00----------1.00-----------------------------------------------------
.......................................................................................TGAACTGCCAGGCCAGCTGCCT............................................................................................................................................................................................................................................................................................................................................... 2211.001.00---------1.00------------------------------------------------------
...............................CTCATCTGGGGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................. 1631.001.00---------------------------------------------------------0.670.33-----
........................................................................................................................................................................CTAGTTCTTTTTGCCTT................................................................................................................................................................................................................................................................... 1730.330.33-----------------------------------------------------------0.33----
......................................CAACTTGCTCATCTGG...................................................................................................................................................................................................................................................................................................................................................................................................... 1650.200.20-------------------------------------------------------------0.20--
..AAGCTGGCATCACTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................... 1760.170.17--------------------------------------------------------------0.17-