ID: uc001iew.1_intron_5_0_chr1_249119566_r
GENE: SH3BP5L(1)
chr1:249119516-249120083-


(1)
AGO1.ip
(1)
AGO2.ip
(8)
B-CELL
(1)
BRAIN
(5)
BREAST
(25)
CELL-LINE
(3)
CERVIX
(4)
HEART
(1)
HELA
(4)
LIVER
(3)
OTHER
(26)
SKIN
(1)
TESTES
(3)
UTERUS
(1)
XRN.ip

Sense strand
GGGAGATTGTTTGCAGCATAGAAGCTCCGCGGACGGGAAGGTAAACTGAGGTAAGGCTGTGCGGGGGGCTTTTGCGCATGGCTGGGTAGAATGGACGGGAGTAGGGTCCTTGGGATTGCGGAAGAGTGTGGAATTGGAGACGGGAGGCTTAGATGTCTCGGGTTGGACAGAGAAGGTGGGGTGGGGCTCGGGGTTACAAGGTGAATCGCAAAGCCGGGCTGGGGTGGAGTGGGACGAGCGGGAGACCACAGGAGATGGAGGAGAGCCTAGGGGTGCAGAGGAAAGTCTCGAAGGCGCTGGTTGAGGAGGGCCTGGGTCGAGAGGAGCTGGGACGGGGGAAGAGTAGAATCTAAAGTCCTTGAGGGCTAAGGAGAGAAGTTGAGGTAGGGACTGGTCGGAATACATGGGTGGGGGCGTGGTGAGAGTGTAGTTTTTGGGAGGCTGTAGAGTTGGAAGGGGCTGGTGGCTGCGGTTTTGATGCTGACATGACCATATACTTGGCCTTTGTTTCTCTGCAGCTCCCCAGAGACGCTCATCCTACAGCCTCAGCTCGGGCCCAGCCTTCTCT
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................((((((((.....(((((((.((((.((((((......)))).))...))))......)))))))....))))))))..................................................
..................................................................................................................................................................................................................................................................................................................................................................................................................................419................................................................................................518................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR553576(SRX182782)
source: Testis. (testes)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577739(Rovira)
total RNA. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM339994(GSM339994)
hues6. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040011(GSM532896)
G529T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038854(GSM458537)
MM653. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
...............................GACGGGAAGGTAAACTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18114.0014.00--14.00-------------------------------------------------------------------------------------
..................................GGGAAGGTAAACTGAGGTAAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.005.005.00---------------------------------------------------------------------------------------
............................GCGGACGGGAAGGTAAACTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.005.00-5.00--------------------------------------------------------------------------------------
........................CTCCGCGGACGGGAAGGTAAACTGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.005.00----------3.00---------------2.00-------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTTTGTTTCTCTGCAGT.................................................215.000.00-----5.00----------------------------------------------------------------------------------
.........................TCCGCGGACGGGAAGGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.004.00--------1.00----------------------------------------------1.00--------1.001.00----------------------
.............................CGGACGGGAAGGTAAACTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003.003.00---------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTAGAGTTGGAAGGGGCTGGTGG......................................................................................................2713.003.00----3.00-----------------------------------------------------------------------------------
.................................CGGGAAGGTAAACTGAGGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003.00-3.00--------------------------------------------------------------------------------------
............................................................................................................................................................................................................ATCGCAAAGCCGGGCTGGGG........................................................................................................................................................................................................................................................................................................................................................2013.003.002.00-------------------------------------------------------------------------1.00-------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCTTTGTTTCTCTGCAG..................................................2113.003.00-----------1.002.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................TGGAGGAGAGCCTAGTTAC......................................................................................................................................................................................................................................................................................................192.000.00------------------2.00---------------------------------------------------------------------
.....................AAGCTCCGCGGACGGGAAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002.00-----------1.00-----------------------------------------------------------1.00----------------
................................ACGGGAAGGTAAACTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002.00-------------1.00-----------------------------------------------------------------1.00--------
......................AGCTCCGCGGACGGGAAGGTAAACTGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.001.00----------------2.00-----------------------------------------------------------------------
.................................................................................CTGGGTAGAATGGACGGGAGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002.00--------------------2.00-------------------------------------------------------------------
................................ACGGGAAGGTAAACTGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002.001.001.00--------------------------------------------------------------------------------------
...............................GACGGGAAGGTAAACTGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00-2.00--------------------------------------------------------------------------------------
...................................................TAAGGCTGTGCGGGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1712.002.00-2.00--------------------------------------------------------------------------------------
.........TTTGCAGCATAGAAGCTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00-2.00--------------------------------------------------------------------------------------
.........................TCCGCGGACGGGAAGGTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00---------------------------------------1.00-----------------1.00------------------------------
.....................................................................................................................................................................................................................CCGGGCTGGGGTGGAGTGGGA..............................................................................................................................................................................................................................................................................................................................................2112.002.00-----------1.00----------------------------------------------------------1.00-----------------
.....................AAGCTCCGCGGACGGGAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.001.001.00--------------------------------------------------------------------------------------
.............................................................................ATGGCTGGGTAGAATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.501.50-1.00----------------------------------------------------------------------------------0.50---
............................................................................................................................................................................................CGGGGTTACAAGGTGAAT..........................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------------------------1.00--------------------------------------------------------
.............................CGGACGGGAAGGTAAACTGAGGTAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.001.00---------------------------------------------------------------------------------------
......................................................................................................................CGGAAGAGTGTGGAATTGGAGACGGGAGGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00----------------------------------------------1.00-----------------------------------------
............................GCGGACGGGAAGGTAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------1.00----------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................TAGGGACTGGTCGGA.........................................................................................................................................................................1511.001.00----------------------------------------1.00-----------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGTAGTTTTTGGGAGGCTGTAGAG.......................................................................................................................2811.001.00-------------------1.00--------------------------------------------------------------------
........................CTCCGCGGACGGGAAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------------------------1.00-------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGGTGAGAGTGTATAG........................................................................................................................................201.000.00------1.00---------------------------------------------------------------------------------
................................................................................................................................................................................TGGGGTGGGGCTCGGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------------------1.00------------------------------------------------------------
........................CTCCGCGGACGGGAAGGTAAACTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-1.00--------------------------------------------------------------------------------------
......................AGCTCCGCGGACGGGAAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------------------1.00----------------------------------------------------
.......................GCTCCGCGGACGGGAAGGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-------------------------------------------------1.00--------------------------------------
......................AGCTCCGCGGACGGGAAGGTAAACGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00----------------------1.00-----------------------------------------------------------------
...........................................................TGCGGGGGGCTTTTGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00---------1.00------------------------------------------------------------------------------
....................GAAGCTCCGCGGACGGGAAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-------1.00--------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................TTGAGGGCTAAGGAGGCC................................................................................................................................................................................................181.000.00-----------------------------1.00----------------------------------------------------------
.................................................................................CTGGGTAGAATGGACTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------------------------------------1.00---------------
.....................................................................................................................................................TAGATGTCTCGGGTTGGACAGAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------------------1.00------------------------------------------------------
.............................CGGACGGGAAGGTAAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.001.00---------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGGCTGCGGTCAGA...........................................................................................191.000.00--------1.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTTTTGGGAGGCTCAAA.........................................................................................................................201.000.00---------------------------------------------------------------1.00------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTGGGGGCGTGGGTT..................................................................................................................................................181.000.00---------------1.00------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTGGTGAGAGTGTAGTTTTTGGGAGGC..............................................................................................................................3011.001.00--------------1.00-------------------------------------------------------------------------
........................CTCCGCGGACGGGAAGGTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00----------------------------------1.00-----------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................GGTCGGAATACATGGGTGGGGGCGTGGTGAGAG...............................................................................................................................................3311.001.00---------------------1.00------------------------------------------------------------------
.............................CGGACGGGAAGGTAAACTGAGGTAAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.001.00---------------------------------------------------------------------------------------
...........................CGCGGACGGGAAGGTAAACTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00---1.00------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTAGTTTTTGGGTCT...............................................................................................................................181.000.00-----------------------------1.00----------------------------------------------------------
..........................CCGCGGACGGGAAGGTAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-------------------------------------------------------------------------1.00--------------
..............................................................................................................................................................................................................................................................................................................................................GGGGAAGAGTAGAATCTG........................................................................................................................................................................................................................181.000.00---1.00------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................GTGGAGTGGGACGAGCGGGAGACC.................................................................................................................................................................................................................................................................................................................................2411.001.00--------------------------------------------------------------------1.00-------------------
.................ATAGAAGCTCCGCGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00------------------------------------------------------------------------------1.00---------
.............CAGCATAGAAGCTCCGCGGACGGGAAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00-------1.00--------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................AGGAGATGGAGGAGAGCCTAGGG........................................................................................................................................................................................................................................................................................................2311.001.00----------------------------------------------------1.00-----------------------------------
..............................................................................................................................................................................................................CGCAAAGCCGGGCTGGG.........................................................................................................................................................................................................................................................................................................................................................1711.001.00--------------------------------------------------------------1.00-------------------------
...............................................................................................................................................................GGGTTGGACAGAGAAGGCC......................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------1.00------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................AGTCCTTGAGGGCTATGGG....................................................................................................................................................................................................191.000.00------------------------1.00---------------------------------------------------------------
......................AGCTCCGCGGACGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00---1.00------------------------------------------------------------------------------------
...........................CGCGGACGGGAAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.001.00-------------------------------------1.00--------------------------------------------------
.....................AAGCTCCGCGGACGGGAAGGTAAACTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00-------1.00--------------------------------------------------------------------------------
..........TTGCAGCATAGAAGCTCCGCGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-------1.00--------------------------------------------------------------------------------
.................................CGGGAAGGTAAACTGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------------------------------1.00-------------------------------
......................................AGGTAAACTGAGGTAAGGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-1.00--------------------------------------------------------------------------------------
.................ATAGAAGCTCCGCGGACGGGAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-1.00--------------------------------------------------------------------------------------
......................AGCTCCGCGGACGGGAAGGTAAACTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00------------------------------------------1.00---------------------------------------------
...............GCATAGAAGCTCCGCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00------------------------------1.00---------------------------------------------------------
................................................................................................................................................................................................................CAAAGCCGGGCTGGGGTGGAG...................................................................................................................................................................................................................................................................................................................................................2111.001.00----------------------------1.00-----------------------------------------------------------
.................ATAGAAGCTCCGCGGACGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.001.00---------------------------------------------------------------------------------------
............................GCGGACGGGAAGGTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00------------------------------------------------------------1.00---------------------------
.............................CGGACGGGAAGGTAAACTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.001.00---------------------------------------------------------------------------------------
..................................................GTAAGGCTGTGCGGGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------1.00----------------------------------------------------------------------
.........................TCCGCGGACGGGAAGGTAAACTGAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.001.00---------------------------------------------------------------------------------------
.......................................................................................................................................GGAGACGGGAGGCTTAGATGT............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------1.00----------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................CTGGGACGGGGGAAGAGTA...............................................................................................................................................................................................................................1911.001.00--------------1.00-------------------------------------------------------------------------
..................TAGAAGCTCCGCGGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-------------------------------------------------------------------1.00--------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGTGAGAGTGTAGGTTC......................................................................................................................................201.000.00-------------------1.00--------------------------------------------------------------------
...............................................................................................................................GTGGAATTGGAGACGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--1.00-------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTGGCCTTTGTTTCTCTGCAG..................................................2411.001.00----------------------1.00-----------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCTGTAGAGTTGGGC.................................................................................................................181.000.00--1.00-------------------------------------------------------------------------------------
................CATAGAAGCTCCGCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-----------------------1.00----------------------------------------------------------------
..........TTGCAGCATAGAAGCTCCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00---------------------------------------------------------------------1.00------------------
..................................................GTAAGGCTGTGCGGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.001.00---------------------------------------------------------------------------------------
............................GCGGACGGGAAGGTAAACTGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----------------------------------------------------------1.00-----------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTTTTTGGGAGGCTGTAGAGTTCTG..................................................................................................................291.000.00---------------------1.00------------------------------------------------------------------
...........................................................................GCATGGCTGGGTAGAATGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00----1.00-----------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGGCTGGTGGCTGCGGTTTTGTT.........................................................................................261.000.00---------1.00------------------------------------------------------------------------------
..............................................................................................ACGGGAGTAGGGTCCTTGGGATTGCGGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00-------------------------1.00--------------------------------------------------------------
......................................................................................................................................................................................................................CGGGCTGGGGTGGAGTGGG...............................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------1.00----------------------------------------------
........................................................................................................................................GAGACGGGAGGCTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................1621.001.00-----------------------1.00----------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCTTTGTTTCTCTGCAGT.................................................2211.003.00------------------------------------------------------1.00---------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGTAGAGTTGGAAGGGGCTGGTGGCTG...................................................................................................3111.001.00--------------------------------1.00-------------------------------------------------------
..................................................................................................................................................................................................................AAGCCGGGCTGGGGTGGAGTG.................................................................................................................................................................................................................................................................................................................................................2111.001.00------------------------------------------------------------------1.00---------------------
.............CAGCATAGAAGCTCCGCGGACGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00-------------------------------------------------------------1.00--------------------------
.......................................................................................................................................................................................................................................................................................................................................TGGGACGGGGGAAGAGTAGAATC..........................................................................................................................................................................................................................2311.001.00-----------------------------------------------------------------------------1.00----------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAGGCTGTAGAGAGCC...................................................................................................................191.000.00---------------1.00------------------------------------------------------------------------
................CATAGAAGCTCCGCGGACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------1.00-----------------------------------------------------------
....................GAAGCTCCGCGGACGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------1.00----------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGGAGGCTGTAGAGTTGGAA.................................................................................................................2411.001.00-----------------------------------------------1.00----------------------------------------
.....................AAGCTCCGCGGACGGGATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------------------------------------1.00-------------------------------------------------
.......................GCTCCGCGGACGGGAAGGTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00---------------------------------------------------------------------------------1.00------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGAGTTGGAAGGGGC............................................................................................................1911.001.00-------------------------1.00--------------------------------------------------------------
..........................CCGCGGACGGGAAGGTAAACTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00---------------------------1.00------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................AAGGCGCTGGTTGAGGC.....................................................................................................................................................................................................................................................................171.000.00---------------------------------------------------------------------------1.00------------
..................................................GTAAGGCTGTGCGGGAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------------------------------------------------1.00-----------
................................................................................................................................................AGGCTTAGATGTCTCGGGTTGGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................2611.001.001.00---------------------------------------------------------------------------------------
..............AGCATAGAAGCTCCGCGGACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-------------------------------------------1.00--------------------------------------------
......................................AGGTAAACTGAGGTAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.001.00--------1.00-------------------------------------------------------------------------------
.........................TCCGCGGACGGGAAGGTAAACTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00----1.00-----------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGAGTTGGAAGGGGCTGGTG.......................................................................................................2311.001.00---------------------------------------------------1.00------------------------------------
....................................................................................................................................................TTAGATGTCTCGGGTT....................................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50--------------------------------------------------------------------------------------0.50-
.................................................................................................................................................................................................................................................................GAGGAGAGCCTAGGGGTG.....................................................................................................................................................................................................................................................................................................1820.500.50-------------------------------------------------------------------------------------0.50--
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTTTTGGGAGGCTG............................................................................................................................1820.500.500.50---------------------------------------------------------------------------------------
..................................GGGAAGGTAAACTGAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.200.20------------------------------0.20---------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTTTGTTTCTCTG.....................................................1790.110.11---------------------------------------------------------------------------------------0.11
..................................GGGAAGGTAAACTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1690.110.11-------------0.11--------------------------------------------------------------------------

Antisense strand
GGGAGATTGTTTGCAGCATAGAAGCTCCGCGGACGGGAAGGTAAACTGAGGTAAGGCTGTGCGGGGGGCTTTTGCGCATGGCTGGGTAGAATGGACGGGAGTAGGGTCCTTGGGATTGCGGAAGAGTGTGGAATTGGAGACGGGAGGCTTAGATGTCTCGGGTTGGACAGAGAAGGTGGGGTGGGGCTCGGGGTTACAAGGTGAATCGCAAAGCCGGGCTGGGGTGGAGTGGGACGAGCGGGAGACCACAGGAGATGGAGGAGAGCCTAGGGGTGCAGAGGAAAGTCTCGAAGGCGCTGGTTGAGGAGGGCCTGGGTCGAGAGGAGCTGGGACGGGGGAAGAGTAGAATCTAAAGTCCTTGAGGGCTAAGGAGAGAAGTTGAGGTAGGGACTGGTCGGAATACATGGGTGGGGGCGTGGTGAGAGTGTAGTTTTTGGGAGGCTGTAGAGTTGGAAGGGGCTGGTGGCTGCGGTTTTGATGCTGACATGACCATATACTTGGCCTTTGTTTCTCTGCAGCTCCCCAGAGACGCTCATCCTACAGCCTCAGCTCGGGCCCAGCCTTCTCT
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................((((((((.....(((((((.((((.((((((......)))).))...))))......)))))))....))))))))..................................................
..................................................................................................................................................................................................................................................................................................................................................................................................................................419................................................................................................518................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR553576(SRX182782)
source: Testis. (testes)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577739(Rovira)
total RNA. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM339994(GSM339994)
hues6. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040011(GSM532896)
G529T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038854(GSM458537)
MM653. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCTACAGCCTCATG.................. 171.000.00---------------------------------------------1.00------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCTACAGCCTCATATG................ 191.000.00------1.00---------------------------------------------------------------------------------
..........................................................GTGCGGGGGGCTTTTCCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00------1.00---------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCTACAGCCTCATAT................. 181.000.00----------------------------------------------------------------------------------1.00-----
...................................................................................................................................................................................................................................................................................................................................................................................AGAGAAGTTGAGGTAGTTTA................................................................................................................................................................................. 201.000.00-----------------------------------------------------------------------------------1.00----
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGCTGTAGGATGAG................... 1811.001.00-------------1.00--------------------------------------------------------------------------
............................................................................................................................................................................................CGGGGTTACAAGGTGCCC.......................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------------------------1.00---------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCTACAGCCTCAATAG................ 201.000.00------1.00---------------------------------------------------------------------------------
........................................................CTGTGCGGGGGGCTTACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00------------------------------------1.00---------------------------------------------------
..............................CCTCAGTTTACCTTCCCGTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2111.001.00---1.00------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................AGTAGAATCTAAAGTCCTG................................................................................................................................................................................................................ 191.000.00---1.00------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................CTTCGAGACTTTCCTCTGCACC................................................................................................................................................................................................................................................................................... 2211.001.00--------------------------------------------1.00-------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCTACAGCCTCACGTG................ 191.000.00------------1.00---------------------------------------------------------------------------
.................................CGGGAAGGTAAACTGACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------------1.00---------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGTTGGAAGGGGGT........................................................................................................... 171.000.00---1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................CCCAGCTCCTCTCGACCCAGGCC............................................................................................................................................................................................................................................. 2311.001.00--------------------------------------------------------------------------------1.00-------
..........................................................................................................................................................................................................................................................................................................................................................................CTTCTCTCCTTAGCCC.............................................................................................................................................................................................. 1660.170.17-------------------------------0.17--------------------------------------------------------